Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0096 | ATGTCCACCACCACCGCTGCCGCCGCCGCATCCTCCTTCATCGGAACTCGCCTCTCCGAAGTCCGATCCGGGTCCGGTCGGGTTCAAGCCCGTTTCTCATTCGGGAAAAAGAAAAGCCCGGCAAAGAAGAAATCATCAAAGCCCATTTCGGATCGGCCACTTTGGTACCCGGGGGCCGTCGCGCCGGAATGGCTTGACGGTAGCTTGGTGGGTGATTATGGGTTCGACCCATTTGGTTTGGGGAAACCCGCAGAGTACTTACAATTTGAATTGGACTCATTGGATCAGAACTTGGCTAAGAACAACGCCGGCGATGTGATCGGAACCCGGTTTGAAAACGCGGACGTGAAGTCGACTCCGTTTCAGCCGTACAGCGAGGTGTTTGGATTGCAGAGATTTCGTGAGTGTGAGCTTATCCATGGAAGGTGGGCTATGTTGGCCACTCTTGGTGCTCTCACCGTTGAATGGCTCACCGGCGTTACTTGGCAAGATGCCGGAAAGGTAGAGCTAGTAGAAGGATCATCATATCTTGGGCAACCCCTTCCATTCTCCATATCCACATTGATATGGATCGAAGTTCTCATAATCGGGTACATCGAATTCCAAAGAAACGGTGAGCTTGACCCGGAAAAGAGATTGTACCCGGGTGGAAGCTACTTCGACCCGCTCGGCTTAGCCGCTGACCCGGAAAAGAAATTCGTCCTTCAATTGGCAGAGATCAAGCATGCCCGTCTCGCCATGGTCGGCTTCCTCGGCTTTGCCGTTCAGGCAGCCGCCACCGGAAAAGGTCCGCTTAATAACTGGGCTACCCATTTGAGTGACCCGCTCCACACCACCATTATTGACACTTTTTCTTCCTCTTAA | 864 | 53.01 | MSTTTAAAAASSFIGTRLSEVRSGSGRVQARFSFGKKKSPAKKKSSKPISDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLIIGYIEFQRNGELDPEKRLYPGGSYFDPLGLAADPEKKFVLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1192407 | 1194079 | + | evm.model.ptg000018l.519 | HCH11g0096 | 553563 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0096 | 287 | Gene3D | Chlorophyll a/b binding protein domain | 55 | 287 | - | - | |
HCH11g0096 | 287 | Pfam | Chlorophyll A-B binding protein | 61 | 257 | IPR022796 | - | |
HCH11g0096 | 287 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 6 | 281 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro) | |
HCH11g0096 | 287 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 108 | 286 | - | - | |
HCH11g0096 | 287 | SUPERFAMILY | Chlorophyll a-b binding protein | 45 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0096 | HCH-Chr11:1192407 | HCH13g0405 | HCH-Chr13:2794056 | 4.80E-38 | dispersed | |
HCH11g0096 | HCH-Chr11:1192407 | HCH9g0770 | HCH-Chr9:5266398 | 3.50E-150 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0096 | K08915 | - | rcu:8267514 | 509.22 |