Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0096 ATGTCCACCACCACCGCTGCCGCCGCCGCATCCTCCTTCATCGGAACTCGCCTCTCCGAAGTCCGATCCGGGTCCGGTCGGGTTCAAGCCCGTTTCTCATTCGGGAAAAAGAAAAGCCCGGCAAAGAAGAAATCATCAAAGCCCATTTCGGATCGGCCACTTTGGTACCCGGGGGCCGTCGCGCCGGAATGGCTTGACGGTAGCTTGGTGGGTGATTATGGGTTCGACCCATTTGGTTTGGGGAAACCCGCAGAGTACTTACAATTTGAATTGGACTCATTGGATCAGAACTTGGCTAAGAACAACGCCGGCGATGTGATCGGAACCCGGTTTGAAAACGCGGACGTGAAGTCGACTCCGTTTCAGCCGTACAGCGAGGTGTTTGGATTGCAGAGATTTCGTGAGTGTGAGCTTATCCATGGAAGGTGGGCTATGTTGGCCACTCTTGGTGCTCTCACCGTTGAATGGCTCACCGGCGTTACTTGGCAAGATGCCGGAAAGGTAGAGCTAGTAGAAGGATCATCATATCTTGGGCAACCCCTTCCATTCTCCATATCCACATTGATATGGATCGAAGTTCTCATAATCGGGTACATCGAATTCCAAAGAAACGGTGAGCTTGACCCGGAAAAGAGATTGTACCCGGGTGGAAGCTACTTCGACCCGCTCGGCTTAGCCGCTGACCCGGAAAAGAAATTCGTCCTTCAATTGGCAGAGATCAAGCATGCCCGTCTCGCCATGGTCGGCTTCCTCGGCTTTGCCGTTCAGGCAGCCGCCACCGGAAAAGGTCCGCTTAATAACTGGGCTACCCATTTGAGTGACCCGCTCCACACCACCATTATTGACACTTTTTCTTCCTCTTAA 864 53.01 MSTTTAAAAASSFIGTRLSEVRSGSGRVQARFSFGKKKSPAKKKSSKPISDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLIIGYIEFQRNGELDPEKRLYPGGSYFDPLGLAADPEKKFVLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1192407 1194079 + evm.model.ptg000018l.519 HCH11g0096 553563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0096 287 Gene3D Chlorophyll a/b binding protein domain 55 287 - -
HCH11g0096 287 Pfam Chlorophyll A-B binding protein 61 257 IPR022796 -
HCH11g0096 287 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 281 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH11g0096 287 FunFam Chlorophyll a-b binding protein, chloroplastic 108 286 - -
HCH11g0096 287 SUPERFAMILY Chlorophyll a-b binding protein 45 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0096 HCH-Chr11:1192407 HCH13g0405 HCH-Chr13:2794056 4.80E-38 dispersed
HCH11g0096 HCH-Chr11:1192407 HCH9g0770 HCH-Chr9:5266398 3.50E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0096 K08915 - rcu:8267514 509.22