Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0098 ATGACTTCTTATTGCTTTGCAATCCTCAATTGCTGTAAAGGAAATAGAAAATCTGAGGATCAGGCAGCAGGAATTGTTTCAAACAATGTACGGATATTTTCTTATAATTCATTGAGATCGGCGACTAGTAATTTCCATCCATCAAGCAGAATAGGTGCAGGAGGTTATGGAGTTGTCTACAAAGGCATTTTAAGAGATGGTACCCAAGTTGCTATTAAATCACTATCTGCAGAATCAGTTCAGGGAACTCGAGAATTTTTGACAGAGATAAATATGATATCAAATATCAGACATCCTAATCTCGTTGAATTGGTTGGTTGTTGTGTTGAAGGCTCCCATCGGATATTAGTATATGAATACCTGGAAAACAACAGCCTTGCAAGTACTTTGCTCGGTACAAAGAGTAAGTATATTGTATTGGATTGGCCTAAGAGAGCTAAGATTTGTCTGGGTACAGCTTCTGGTCTCGCATTTCTACACGATGAAGCTGAACCATCCGTTGTTCATAGAGATGTCAAGGCTAGCAATATACTTCTTGACAAAAGTTTTCATCCTAAAATAGGAGATTTTGGGTTGGCAAAACTTTTTCCAGACAACGTCACTCATGTCAGTACTCGAGTGGCTGGAACTGTTGGATATCTGGCTCCTGAGTATGCACTTTTAGGACAGTTGACAAAGAAGGCAGATGTATACAGTTTTGGCGTGCTCATGCTAGAAATAATTAGTGGAAGAAGTAGTAGTAAAGCAGCATTCGGAGAAGAATTCTTAATTCTCGTGGAATGGACTTGGAAACTAAAAGAAGAGGGACGGCTTGCCGAACTCATTGATCAAGAACTGATTGATTATCCAAAGGCAGAGGTGATGAGATTCATCATGGTTGCACTCTTTTGTACCCAAGCAGCTGCAAATCAAAGACCAACTATGAAGCAGATTGTGGAGATGCTTTCAAGAGAGGTACACCTTAACGTGAAACTACTAACAGCACCGGGAGTATACAAGGGACACAAATCTCGGCAGTTTCACGGTGCTGCTGCGGTTGCTAGTTCAGAGGGCACATCATCTTCTCTTACAGACAAAGGTAAGCAAGTTATGCATCCTTCTGCATCATCACTCCAATTTAACGACTATGAGAGTTTGACACAGATGCTTCCTAGATGA 1158 40.67 MTSYCFAILNCCKGNRKSEDQAAGIVSNNVRIFSYNSLRSATSNFHPSSRIGAGGYGVVYKGILRDGTQVAIKSLSAESVQGTREFLTEINMISNIRHPNLVELVGCCVEGSHRILVYEYLENNSLASTLLGTKSKYIVLDWPKRAKICLGTASGLAFLHDEAEPSVVHRDVKASNILLDKSFHPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGRSSSKAAFGEEFLILVEWTWKLKEEGRLAELIDQELIDYPKAEVMRFIMVALFCTQAAANQRPTMKQIVEMLSREVHLNVKLLTAPGVYKGHKSRQFHGAAAVASSEGTSSSLTDKGKQVMHPSASSLQFNDYESLTQMLPR 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1202102 1204934 + evm.model.ptg000018l.517 HCH11g0098 553565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0098 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 341 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH11g0098 385 CDD STKc_IRAK 51 317 - -
HCH11g0098 385 SMART serkin_6 45 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0098 385 Gene3D Transferase(Phosphotransferase) domain 1 121 326 - -
HCH11g0098 385 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
HCH11g0098 385 SUPERFAMILY Protein kinase-like (PK-like) 23 315 IPR011009 -
HCH11g0098 385 FunFam cold-responsive protein kinase 1 15 120 - -
HCH11g0098 385 Pfam Protein tyrosine and serine/threonine kinase 49 315 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0098 385 ProSiteProfiles Protein kinase domain profile. 45 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0098 385 Gene3D Phosphorylase Kinase; domain 1 8 120 - -
HCH11g0098 385 FunFam Putative LRR receptor-like serine/threonine-protein kinase 121 327 - -
HCH11g0098 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0098 HCH-Chr11:1202102 HCH3g0635 HCH-Chr3:4419389 8.20E-118 dispersed
HCH11g0098 HCH-Chr11:1202102 HCH6g0639 HCH-Chr6:38236753 1.20E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81028 PF07714 PK_Tyr_Ser-Thr 8.60E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0098 - - - 0.0