Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0100 ATGAAGAAAAATGGAATTCTTTTTGAGATCTTTGTTATATCCATGATGATATCATTATCAGCTGCATTTCCAAATAAACAAACTTCTTATGGAAATGAATCAGATTTGATGGCTTTACTTGATTTCAAAACAAGAATACTCAAAGATCCATTCAAAATCATGAACTCGTGGAATGATTCAATGCATTTCTGCAACTGGGTTGGTGTTACTTGCAATAATAACACAGCTAGAAGAGTAGTAATTCTCAACTTGGAAGCTCAGGAATTATCAGGCTCTTTACCACCTTCACTTGGAAACCTTACTTATCTCACTGAAATGAGATTGGGAAACAACTACTTCAATGGCCGGATTCCTCAAGAGTTCGGTCAGTTATTACTGTTGCGTCATCTTAATCTGTCTTTCAACGACATCGGCGGGGAGATTCCGGCCAATATAAGTCATTGCACTGAGCTTCTTCAACTGGCCATTGATATCAATGAGCTTGTAGGGCAGATTCCAGATCAGTTCTCTATATTGACTAAGTTAGATAGACTGGGATTTGGTGGTAACAATCTATCCGGAACTATCCCATCTTGGATTGGTAATTTTTCTTCTCTATTTGCTTTGTCATTTGCCAGGAATAATTTTCAAGGAAGCATACCGAGTGAATTAGGCCGTTTGTCGAGGTTGCGATTCTTCACCGTGTATGCGAACAATCTAACTGGTGTAGTGCCTTCTTCAATTTATAATATAACTCCCCTTGTTTTCTTATCTCTAACTCAAAATCAACTGCAAGGCAATCTTCCACCAAATGTTGGATTTACTCTTCCCAATCTTCAAGTCTTTGCTGGTGGAGTTAATAACTTAAGAGGACCTATTCCCACATCGTTGGCTAATGCCTCGGCTCTTCGAATACTCGATTTTGCAGAAAATGGTCTTACCGGGACGGTACCTGATAACTTAGGGAGCTTGAAAGATTTGGAGAGACTCAATTTTGATGACAACAGGCTTGGAAGTGGGAAAACTGGTGACTTGAATGTAATCAGTTCCTTGGCTAATTGCACGAGTCTACGGGTTCTCGGTCTTGCTGGAAACCGTTTTGGAGGAGCATTGCCTTCCTCCATTGCCAATCTTTCAACACAGTTGACAATTCTAACATTGGGTAGCAATTTATTAAGTGGAAGCATTCTTGCAGGTATTGAACACCTTGTTAGTTTGCAAGTTCTTGGAATGGAAGGTAACAATTTTCATGGCAGTGTCCCTCACATTATTGGGAAGCTTCAGAACTTGAAGGTACTGAATTTGAATGACAACAAATTAACAGAACAAATTCCATCCTCCATTGGTAACTTATCTTACTTGACAAAGCTCTTCATGGAGGATAATAGACTCGAGGGAAGTATACCGCCAAGCTTAGGACGATGCAAAAGTCTTCAAGTTCTTGATCTATCTGGTAACAACCTAAACGGCACCATACCGAACGAGGTTCTTAGTCTCTCTTCCCTTTCAATCTATTTGGCCTTAAATCATAATTCATTTACTGGTCCATTGCCATTAGAAGTGGGTGAGTTAGTTAGTTTAACATTGTTGGATGTATCAGAGAACAAATTATCAGGTGACATACCGAAAAGCCTCGGTAAATGCATTAGCATGGAACACTTGCGTCTAGGGAGCAACCAATTTGAAGGAACAATTCCACAATCTTTGGAATCTTTAAGAGGTCTAGAAGAACTAAATCTCTCAAGCAATAACTTGTCTGGAGAAATTCCCAAATTCTTCAGTAAGCTTCTTGCTCTGAAGCATCTTGATCTATCCTACAATGATTTCAAGGGAGAAGTGCCTAAAGAAGGGGTATTTTCCAATTCAACCATGATTTCCATCTTTGGGAACAAAAATCTTTGTAATGGTTTGCACGAATTACATTTACCTCCATGCCCAACTAACCGAAAACATTCATCCTTAAAACATCTAGCACCGAATTTGTTAATCTCCGTGCTCGGTATAGTCGCATTTCTAGCCATTCTTGTGAGCATCATTTCTGTTTGTTGCATAGTGAAGAAATCAAGGAAGAATGCTTTAACTTCATCTTCATCCAAGGATTTACTATCAAATATTTCGTACTTAGAACTCAGTAAATCAACTAATGGGTTCTCTGTGGACAATTTGATTGGCTCTGGTAGTTTTGGTTCTGTGTACAAAGGTATATTTATGAATGATGGATCAACTGTAGCCATTAAGGTTATAAACCTTCAACAACAGGGTGCTTCCAAGAGTTTCATTGATGAATGCAAAGCTTTGACGAGCATACGACACCGTAATCTCCTCAAGATCATAACTTCTTGCTCAAGTACCGATGATCAAGGCAACGAATTCAAAGCTCTAGTCTTCGATTTCATGTCCAATGGAAGCCTCGATGATTGGCTTCACCCAATAAATCATGAGCAGAATCAAGGGAAAAGATTGAGCCTCACTCAGAGATTGAACATTGCCATTGATATTGCCAATGCATTGGATTATCTCCACAACCACTGCGAAATGACTATTGTTCATTGTGATTTAAAGCCTAGCAATGTATTGCTCGACGAAGACATGGTAGCCCATGTAGGCGATTTCGGGTTAGCTAGAATCATCATGGAAGGATCAAATCGATCCTCTTTTGAACAAACCATGACAATTGCTCTAAAGGGTTCTATTGGGTATATCCCTCCAGAATATGGTTATGGTAGCAAAATTTCCATTCAAGGAGATATATATAGCTATGGAATATTACTACTAGAGATGATCACAGGAAAGAGACCAACCGATACTGCATTCGAAGACGGTTTCGATATTCATCGGTTCGCAGCAACTGCATTGCAGCAACATGCCTTCGACATGATAATTGACCATTCATTGCTATCTGAAGAAACACATCAGCAAGAAAAAGAAAATGAAGAACCAATGGAAGAATGTTTAATCTCAGTAATCAAAATCGGGTTGTTTTGTTCCTTGAAAGTTCCAAAAGAGAGAATGTCCATGGATGTTGTTGTCAATGAATTGCAGAAAATTAGAAGCTCTTATATCAAGATTACGAAGCAAGTGAAAAAGCAGTAG 3072 38.93 MKKNGILFEIFVISMMISLSAAFPNKQTSYGNESDLMALLDFKTRILKDPFKIMNSWNDSMHFCNWVGVTCNNNTARRVVILNLEAQELSGSLPPSLGNLTYLTEMRLGNNYFNGRIPQEFGQLLLLRHLNLSFNDIGGEIPANISHCTELLQLAIDINELVGQIPDQFSILTKLDRLGFGGNNLSGTIPSWIGNFSSLFALSFARNNFQGSIPSELGRLSRLRFFTVYANNLTGVVPSSIYNITPLVFLSLTQNQLQGNLPPNVGFTLPNLQVFAGGVNNLRGPIPTSLANASALRILDFAENGLTGTVPDNLGSLKDLERLNFDDNRLGSGKTGDLNVISSLANCTSLRVLGLAGNRFGGALPSSIANLSTQLTILTLGSNLLSGSILAGIEHLVSLQVLGMEGNNFHGSVPHIIGKLQNLKVLNLNDNKLTEQIPSSIGNLSYLTKLFMEDNRLEGSIPPSLGRCKSLQVLDLSGNNLNGTIPNEVLSLSSLSIYLALNHNSFTGPLPLEVGELVSLTLLDVSENKLSGDIPKSLGKCISMEHLRLGSNQFEGTIPQSLESLRGLEELNLSSNNLSGEIPKFFSKLLALKHLDLSYNDFKGEVPKEGVFSNSTMISIFGNKNLCNGLHELHLPPCPTNRKHSSLKHLAPNLLISVLGIVAFLAILVSIISVCCIVKKSRKNALTSSSSKDLLSNISYLELSKSTNGFSVDNLIGSGSFGSVYKGIFMNDGSTVAIKVINLQQQGASKSFIDECKALTSIRHRNLLKIITSCSSTDDQGNEFKALVFDFMSNGSLDDWLHPINHEQNQGKRLSLTQRLNIAIDIANALDYLHNHCEMTIVHCDLKPSNVLLDEDMVAHVGDFGLARIIMEGSNRSSFEQTMTIALKGSIGYIPPEYGYGSKISIQGDIYSYGILLLEMITGKRPTDTAFEDGFDIHRFAATALQQHAFDMIIDHSLLSEETHQQEKENEEPMEECLISVIKIGLFCSLKVPKERMSMDVVVNELQKIRSSYIKITKQVKKQ 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1209765 1212925 - evm.model.ptg000018l.515 HCH11g0100 553567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0100 1023 ProSiteProfiles Protein kinase domain profile. 710 1014 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0100 1023 SUPERFAMILY L domain-like 51 371 - -
HCH11g0100 1023 Gene3D Ribonuclease Inhibitor 266 334 IPR032675 -
HCH11g0100 1023 Gene3D Ribonuclease Inhibitor 155 265 IPR032675 -
HCH11g0100 1023 Pfam Leucine rich repeat 544 602 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Protein kinase domain 711 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0100 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0100 1023 Gene3D Phosphorylase Kinase; domain 1 671 791 - -
HCH11g0100 1023 Gene3D Ribonuclease Inhibitor 335 647 IPR032675 -
HCH11g0100 1023 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524(InterPro)
HCH11g0100 1023 SUPERFAMILY Protein kinase-like (PK-like) 684 1006 IPR011009 -
HCH11g0100 1023 Pfam Leucine Rich Repeat 519 541 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 470 490 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 447 468 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 349 371 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 422 444 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Pfam Leucine Rich Repeat 296 317 IPR001611 GO:0005515(InterPro)
HCH11g0100 1023 Gene3D Ribonuclease Inhibitor 34 154 IPR032675 -
HCH11g0100 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 792 1019 - -
HCH11g0100 1023 PRINTS Leucine-rich repeat signature 471 484 - -
HCH11g0100 1023 PRINTS Leucine-rich repeat signature 565 578 - -
HCH11g0100 1023 SUPERFAMILY L domain-like 373 628 - -
HCH11g0100 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 341 644 - -
HCH11g0100 1023 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 73 340 - -
HCH11g0100 1023 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
HCH11g0100 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 668 791 - -
HCH11g0100 1023 PANTHER OS04G0122200 PROTEIN 41 1009 IPR051809 -
HCH11g0100 1023 SMART LRR_typ_2 420 444 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 468 492 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 565 588 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 589 614 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 172 196 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 124 148 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 396 419 IPR003591 -
HCH11g0100 1023 SMART LRR_typ_2 517 541 IPR003591 -
HCH11g0100 1023 Gene3D Transferase(Phosphotransferase) domain 1 792 1023 - -
HCH11g0100 1023 SMART serkin_6 710 1014 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0100 HCH-Chr11:1209765 HCH11g0167 HCH-Chr11:1704499 8.60E-90 dispersed
HCH1g0384 HCH-Chr1:51682931 HCH11g0100 HCH-Chr11:1209765 2.30E-35 dispersed
HCH11g0100 HCH-Chr11:1209765 HCH11g0101 HCH-Chr11:1220604 9.60E-81 tandem
HCH13g0033 HCH-Chr13:217924 HCH11g0100 HCH-Chr11:1209765 2.90E-08 transposed
HCH6g0301 HCH-Chr6:4427364 HCH11g0100 HCH-Chr11:1209765 3.00E-71 transposed
HCH9g1133 HCH-Chr9:14684291 HCH11g0100 HCH-Chr11:1209765 1.70E-07 transposed
HCH1g0376 HCH-Chr1:51279693 HCH11g0100 HCH-Chr11:1209765 7.60E-33 wgd
HCH11g0100 HCH-Chr11:1209765 HCH13g0548 HCH-Chr13:3851490 2.00E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81029 PF00069 Pkinase 1.00E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0100 - - - 0.0