Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0123 ATGCTTCAGATTCGTCTTAGTAAAGTTCCACAAACGGAAGGTTCTGGAACGGTGAAACCGTTACCGGCGGAGACCGTTACGGTTGCTTGCCCGGACCACCTTGTCATCGCCGATCTTCCTGTTGCGAAGGGCATTGGCACTCCTGCTGCTGCTTCTGTTCTTAAGTCTGTTGGTCGGAGGTCTCGCCGTCAGCTTGGCGAGCGTGTTCATTTTTGTGTGCGTTGCGATTTCCCAATCGCCATTTATGGTCGCTTGAGCCCTTGTGAACATGCCTTCTGTCTGGATTGTGCAAGGAGTGATTCTATATGCTACCTTTGTGATGACCGTATTCAGAAGATTCAAACTATAAAAATGATGGAGGGGATCTTCATTTGTGCAGCCCCACACTGTCTGAAGTCTTTTATGAAGAGGACTGAATTTGAATCTCATATACATGATAGTCATGCTGACCTGCTGAAGCCGAATGCAGAAAAAGAAGATGGAAATGAAATTGAGTCTCAGAGTGCCAAGCAATCTACAGCTTCCGACTCTACTGTGAGAGGTCCATCGAGACCAGCCATATCTCCAGGTCCCAATTCCCAGCTGCAAGATCGGGAAGAAAAATTTCATCGTCAACAATCTAGAGACCAATCTAGGTCTGGTATACAGCAAAAGCAAACACCAATTTTTGGTCAGAACCCAAATAGTACACCTGAGTCTCAACCAGACGGCAGTCATCCACAAGGCTTTGATCGACTTGGTTCTCATGGCCGCTTCCACCCACAAAACTTCGACTCACAAGGTGCTCCACATCTGGAGTCTGGTCAGTTTTCAGAGAAGCAGCAAGGAATTCTAACCGAGGCTCCGTTTTCACAGTATCCTCCTTTGCAATCAATTCAGCCACCAAATTATGTGATTCCAGCGAATTCAAATCCAATGTTGACTCCTCCTCTACCGTTTGGTTATCCTCCTTTTCCAATTGATGGTGCACAACAATACTACGGTACACCCTATGAAGTTCCACGGCAAGATTCTGCACCTGATGCTGGATCCGAGCAAGGGTCATTACTGGGCTTTCCACCAGGTCCGACAGGAGGTATGAATTTCTCAGCAACTTATCAGCAGTCTTGGAACACAGGACAAGCTGGCGGTCCATACGACCACAATTCTGGTCAAGGAATGCCGGATGGTTTTGCTAATACGATTGATTCCCAAGGAAAACATGCATATTACCAAGGAGATTATGGACGCAGCCCTCGAGGTATGCCCGTGAATTCTTCTCTAGCCAACAAGGGTATGGACCAGGGGCATGCTGGTAATGCAATGGATTTGAGGGATGGTAAGGGTATATTGGCACCACAGCCGATGCAACTTCCTCCTCCGCCACCCCCACCTTATATATCGCAGCATAAGCGGGCCAAGTTCTACTCGGGAGACTTTGATCATGATGGGCAGGTACTCGGATGGCAGAATGATAGCCGGGACAGCTTTGGGAGCGGCCAAGATTAA 1488 47.98 MLQIRLSKVPQTEGSGTVKPLPAETVTVACPDHLVIADLPVAKGIGTPAAASVLKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDDRIQKIQTIKMMEGIFICAAPHCLKSFMKRTEFESHIHDSHADLLKPNAEKEDGNEIESQSAKQSTASDSTVRGPSRPAISPGPNSQLQDREEKFHRQQSRDQSRSGIQQKQTPIFGQNPNSTPESQPDGSHPQGFDRLGSHGRFHPQNFDSQGAPHLESGQFSEKQQGILTEAPFSQYPPLQSIQPPNYVIPANSNPMLTPPLPFGYPPFPIDGAQQYYGTPYEVPRQDSAPDAGSEQGSLLGFPPGPTGGMNFSATYQQSWNTGQAGGPYDHNSGQGMPDGFANTIDSQGKHAYYQGDYGRSPRGMPVNSSLANKGMDQGHAGNAMDLRDGKGILAPQPMQLPPPPPPPYISQHKRAKFYSGDFDHDGQVLGWQNDSRDSFGSGQD 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1411151 1413152 - evm.model.ptg000018l.492 HCH11g0123 553590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0123 495 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
HCH11g0123 495 MobiDBLite consensus disorder prediction 443 495 - -
HCH11g0123 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
HCH11g0123 495 MobiDBLite consensus disorder prediction 447 461 - -
HCH11g0123 495 MobiDBLite consensus disorder prediction 157 268 - -
HCH11g0123 495 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
HCH11g0123 495 MobiDBLite consensus disorder prediction 335 364 - -
HCH11g0123 495 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 469 IPR040383 GO:0016567(InterPro)|GO:0016567(PANTHER)|GO:0030155(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
HCH11g0123 495 MobiDBLite consensus disorder prediction 209 237 - -
HCH11g0123 495 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
HCH11g0123 495 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
HCH11g0123 495 MobiDBLite consensus disorder prediction 166 195 - -
HCH11g0123 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0123 K15685 - csv:101220422 750.355