Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0131 ATGCCACCTTTGGAAATTTCTCAATCCGACATTGATTTGGAACAGGGACATCATCGTCGGTCTGTCACTGGAAGTGACATAAGTGCTGGTTGTAGTGTCTACTTCTCTGATGCTGATGAGGGTTCTTGTTATTCTCAGTTTTTTTCAACCGATGGTGGCTCTTATGATGAGTATAGGTTTGCTTTTGTTTCTCGGCCGGAGGTCGGGATCGTCTCCGACCCCGGTCAAGTCTCATCGGTTTCGGATCAGTCGGTCGAGGTCGAAAACGAGAATGAGACTAGTGAGATTAAGGTGCAATTAGCTAAAGTTGAGAGGGATTGCAGGATTTGTCATTTGGGGTTGGAGAGTAATAGCCAAGAATCTGGAATTCCAATTGAATTGGGGTGTTCTTGCAAGGATGATTTAGCTGCTGCTCATAAGCATTGTGCTGAAACTTGGTTTAAAATCAAAGGAAATAAGACATGTGAGATTTGTCATTCTGTCGCACGCAACATTCTTGGACCACACGAGATCGAGTCGACAGATCAATCTAACGGATCCAACAATGCCTCCTCAACAGCTGCAGTTGCAGCATCGGTTCCTTCATCAGACAGCCAAAGCTTCTGGCGTGGCCACCGGTTTCTGAATTTTCTGCTCGCTTGTATGGTATTTGCTTTCGTCATATCATGGCTCTTCCATTTCAATGTGCCCTCATGA 696 45.26 MPPLEISQSDIDLEQGHHRRSVTGSDISAGCSVYFSDADEGSCYSQFFSTDGGSYDEYRFAFVSRPEVGIVSDPGQVSSVSDQSVEVENENETSEIKVQLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPHEIESTDQSNGSNNASSTAAVAASVPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 1452770 1455000 + evm.model.ptg000018l.484 HCH11g0131 553598
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0131 231 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
HCH11g0131 231 SUPERFAMILY RING/U-box 104 162 - -
HCH11g0131 231 PANTHER ZINC FINGER, RING-CH-TYPE 38 230 - -
HCH11g0131 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
HCH11g0131 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 166 IPR013083 -
HCH11g0131 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
HCH11g0131 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0131 HCH-Chr11:1452770 HCH14g0997 HCH-Chr14:37297334 7.10E-24 dispersed
HCH11g0131 HCH-Chr11:1452770 HCH13g0528 HCH-Chr13:3682607 5.20E-51 wgd
HCH11g0131 HCH-Chr11:1452770 HCH3g1416 HCH-Chr3:52104041 6.20E-36 wgd
HCH11g0131 HCH-Chr11:1452770 HCH9g0739 HCH-Chr9:4955685 2.20E-62 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0131 - - - 0.0