Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g0131 | ATGCCACCTTTGGAAATTTCTCAATCCGACATTGATTTGGAACAGGGACATCATCGTCGGTCTGTCACTGGAAGTGACATAAGTGCTGGTTGTAGTGTCTACTTCTCTGATGCTGATGAGGGTTCTTGTTATTCTCAGTTTTTTTCAACCGATGGTGGCTCTTATGATGAGTATAGGTTTGCTTTTGTTTCTCGGCCGGAGGTCGGGATCGTCTCCGACCCCGGTCAAGTCTCATCGGTTTCGGATCAGTCGGTCGAGGTCGAAAACGAGAATGAGACTAGTGAGATTAAGGTGCAATTAGCTAAAGTTGAGAGGGATTGCAGGATTTGTCATTTGGGGTTGGAGAGTAATAGCCAAGAATCTGGAATTCCAATTGAATTGGGGTGTTCTTGCAAGGATGATTTAGCTGCTGCTCATAAGCATTGTGCTGAAACTTGGTTTAAAATCAAAGGAAATAAGACATGTGAGATTTGTCATTCTGTCGCACGCAACATTCTTGGACCACACGAGATCGAGTCGACAGATCAATCTAACGGATCCAACAATGCCTCCTCAACAGCTGCAGTTGCAGCATCGGTTCCTTCATCAGACAGCCAAAGCTTCTGGCGTGGCCACCGGTTTCTGAATTTTCTGCTCGCTTGTATGGTATTTGCTTTCGTCATATCATGGCTCTTCCATTTCAATGTGCCCTCATGA | 696 | 45.26 | MPPLEISQSDIDLEQGHHRRSVTGSDISAGCSVYFSDADEGSCYSQFFSTDGGSYDEYRFAFVSRPEVGIVSDPGQVSSVSDQSVEVENENETSEIKVQLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPHEIESTDQSNGSNNASSTAAVAASVPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 231 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1452770 | 1455000 | + | evm.model.ptg000018l.484 | HCH11g0131 | 553598 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g0131 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
| HCH11g0131 | 231 | SUPERFAMILY | RING/U-box | 104 | 162 | - | - | |
| HCH11g0131 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 38 | 230 | - | - | |
| HCH11g0131 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) | |
| HCH11g0131 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 166 | IPR013083 | - | |
| HCH11g0131 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| HCH11g0131 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0131 | HCH-Chr11:1452770 | HCH14g0997 | HCH-Chr14:37297334 | 7.10E-24 | dispersed | |
| HCH11g0131 | HCH-Chr11:1452770 | HCH13g0528 | HCH-Chr13:3682607 | 5.20E-51 | wgd | |
| HCH11g0131 | HCH-Chr11:1452770 | HCH3g1416 | HCH-Chr3:52104041 | 6.20E-36 | wgd | |
| HCH11g0131 | HCH-Chr11:1452770 | HCH9g0739 | HCH-Chr9:4955685 | 2.20E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g0131 | - | - | - | 0.0 |