Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0143 ATGGCTGAGGGTATTGAAGCTTATCATGTCCCTCAACAAAGCAGAAGAGATAAACTAAGAGTTATCTCTCCGGCCACCCTTAACCACCCTTCCTCTGCCGCTTCCGCCGCTAGTTTACTCCCTCTCTACGATCCCTCCCTTATCTCCCCAGATATGCTCACATGCACACCGCCGCCGCACCACCACCACCTCACAGCGGCGGCCTTTGCCGGAAACCGTTACCAATATCATCCATATTTCGACCCACAACCCTCCCTCACTCATCATCTTCCTGATATTGACCAAAACCAAAACCCTCTTCTTTGTTATACTTCTCTCAACGGAGCTGACGTTGTAACCACGGCGTTTAAGCCGGAACCGCTTTCGTTGTCGCTGTCTTCTCAACCCTACCTCGGCATTAATAGTAATAATAACAATAATAATGTCATGTCTAAAACTTTAGTCCCTCTTGGTCCTTTCACCGGCTATGCTTCGATTCTTAAAGGGTCTAGATTCTTGAAGCCTGCACAGCAGTTGTTGGAAGAAGTTTGTGATGTTGGAGCTCATGGACTGGATACCGATAAGGCGGTTTCGATGGATTCGGCTTTGATCGATCCGTCGGCCGAGTGCTTGAGTGATAGTGGAATTGTCGATGATCCGCTCGGCGGCGGTGGCGGTGGTGATGGTGGTACTCGAGGAAATAAGTCTAGGCTTGTTTCTATGCTTGAAGAGGTTTATAGACGGTACAAGCAATACTATCAACAAATTCAAGAAGTAATGACTTCATTCGAGTATATATCTGGACTTGGAAATGCAGCTCCCTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTTGACCAACTTCAGTTCACTAAGAAGACTCATGGCGACTATTGTCAAAGATCTGTTCACAGCTCTGGGTTTCTTGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTGCCTGAGCGAGCGGTGTCAGTTCTTCGTGCTTGGTTGTTCGAACATTTTCTGCATCCTTATCCTTCTGATACCGACAAGCTTATGCTGGCCAAACAGACTGGCCTGTCTCGAAGTCAGGTATCTAACTGGTTCATAAATGCAAGAGTGAGGCTATGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACAAAGCAAACACAGAAGAATTTGCAAAGAGAAGATCGAAATGTCATCAGGTCAAACGACCATCATCCTTCATCAAACTCACTTGCGTCAGATGATCCGTCTACATCAGCTCAAAAGGTTCAAGATACTCCTTCCAAACGCAATAGAAACGAACCTCATGACATACCAATGGGTAATCAAGAACCCTTGAATGTACCTTACAACTTGTCAAGCCACTCCAACATGGTTGCTAATGCAAACAACAGCGGTGGTGTTTCGTTAACTTTGGGTCTTAACCAGAACAATGGTGTAGGTTTCTCGGATCCCTTTCCTGTCGGGTTCCCAGTGACAGCCACTCGACGTTTTGGCCTCGGTGTCGAAGCAAACAACAACGGGTATGTAATGGGTGGTTTCGAAGCGCAGAATCGGCATTTCGGGAGGGATGTACTTGGAGGTCAGCTTTTGCACGATTTCGTCGGGTGA 1623 46.64 MAEGIEAYHVPQQSRRDKLRVISPATLNHPSSAASAASLLPLYDPSLISPDMLTCTPPPHHHHLTAAAFAGNRYQYHPYFDPQPSLTHHLPDIDQNQNPLLCYTSLNGADVVTTAFKPEPLSLSLSSQPYLGINSNNNNNNVMSKTLVPLGPFTGYASILKGSRFLKPAQQLLEEVCDVGAHGLDTDKAVSMDSALIDPSAECLSDSGIVDDPLGGGGGGDGGTRGNKSRLVSMLEEVYRRYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFTKKTHGDYCQRSVHSSGFLDHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLQREDRNVIRSNDHHPSSNSLASDDPSTSAQKVQDTPSKRNRNEPHDIPMGNQEPLNVPYNLSSHSNMVANANNSGGVSLTLGLNQNNGVGFSDPFPVGFPVTATRRFGLGVEANNNGYVMGGFEAQNRHFGRDVLGGQLLHDFVG 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1550738 1553856 + evm.model.ptg000018l.472 HCH11g0143 553610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0143 540 Pfam Homeobox KN domain 335 374 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH11g0143 540 ProSiteProfiles 'Homeobox' domain profile. 315 378 IPR001356 GO:0003677(InterPro)
HCH11g0143 540 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 421 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g0143 540 SMART prehox3 154 289 IPR006563 -
HCH11g0143 540 SUPERFAMILY Homeodomain-like 320 385 IPR009057 -
HCH11g0143 540 Gene3D - 321 383 - -
HCH11g0143 540 SMART HOX_1 318 382 IPR001356 GO:0003677(InterPro)
HCH11g0143 540 FunFam BEL1-like homeodomain protein 9 321 383 - -
HCH11g0143 540 MobiDBLite consensus disorder prediction 403 452 - -
HCH11g0143 540 Pfam Associated with HOX 159 287 IPR006563 -
HCH11g0143 540 CDD homeodomain 318 379 IPR001356 GO:0003677(InterPro)
HCH11g0143 540 MobiDBLite consensus disorder prediction 407 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0143 HCH-Chr11:1550738 HCH3g1226 HCH-Chr3:45566935 6.40E-52 dispersed
HCH11g0143 HCH-Chr11:1550738 HCH9g0718 HCH-Chr9:4783199 1.70E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32521 PF07526 POX 5.00E-32 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0143 - - - 0.0