Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0171 ATGCCTAACTTTCTCTCTTTCTCTCTCTTCCTCTCCACCCTTTTCTCTCTCTCCTCCTCCTCCAACCTCTTCTTCCCTGGCTTCCACACCAACAACATAACCTTAACAGACACCGCACAAATCCAACCAAACGGACTCTTAAAACTCACGAACGACACGAGCAGATTACAAGGCCATGCTTTTTACAACTCTGCCATCCGTTTCAAAAACTCATCTTCCTCTAAATCTCTCTCTTTCTCCACTGCTTTTGCTTTCTCCATAGTTCCTGAATATCCCACTCTCGGTGGCCATGGATTAGCTTTCGTTATCTCTCCTTCTATAACGCTTCGTGGGTTACCAAGTCAGTATCTTGGCCTTCTTAATGCCTCTGATAAAGGAAACTTTTCTAACCATCTGTTTGCTGTTGAATTTGACACTGTTCAAGATTTTGAGTTTTTTGATATCAATGATAATCATGTCGGTATTAATATTAATAGTATGGTTTCTAATGCTTCTACTACTGCTGCTTATTTTGTTGATGATAATGGTGATAAAAAACAGAATTTGACATTGAAGAGTGGTAGGCCGATTCAAGCTTGGATTGATTATGATTCTGTTGGAAATGTTTTGAATGTGATGCTTTCGCCCTTTTCGACCAAACCCAAGAAGGCGATTTTGTCGTATAATGTCGATTTGTCGCCGATTCTTCAGGAGAATATGTTTGTTGGGTTTTCGGCTTCTACGGGTCTTCTTGCTAGTTCACATTATGTGTTGGGTTGGAGTTTTAGTGTTAATGGGGTAGCTCAAAGTTTGGATCTTGAATCTCTTCCCTCTCTACCTGGGCCGAAGAAGAAGCATGTTGGTTTGACGATTGGTGTTTCGGTTTCGGCTTTCGTGATTGCGGTTTTGGCTATATGTATTGCTGTTTATATCGTTTGGAAGATTAAAAATGCTGATGTGATTGAAGCTTGGGAGCTTGAAATCGGGCCGCATCGATATTCTTATAAGGAGTTGAAGAGAGCTACTAAACGGTTTAGGGACAAGGAGTTGCTTGGGAGGGGTGGATTTGGGAAGGTTTATAAAGGGACATTGCCCAATTCGAGAACTGAAGTTGCTGTGAAGAGGATTTCTCATGAATCGAAACAGGGTTTAAGGGAATTTGTGTCGGAAATTGCGAGTATTGGTCGGCTTCGACATCGGAATTTAGTTCAGTTGTTGGGGTGGTGTCGTCGCCGTGGTGATCTGCTTTTGGTTTATGATTATATGGAGAATGGGAGCTTGGATAATTATTTGTTTGATGAACCGAAAGTGATCTTGAATTGGGAACAGAGGTTTAGGATCATAAAGGGAGTTGCCTCTGGCTTGCTTTACTTGCACGAAGGTTATGAACAAGTTGTCATTCATAGAGATATAAAAGCAAGTAATGTCTTACTCGATAGCGAGTTGAATGGGAAGCTCGGTGACTTCGGCCTTGCTAGACTGTATGAACACGGTGCGAATCCGAGCACGACTCGGGTTGTTGGAACTCTTGGCTATCTTGCACCTGAGCTACCGAGGACGGGTAAAGCCACTACTGGCTCAGATGTTTACGCATTCGGCGCACTTCTGCTCGAAGTCGCTTGTGGCCGTAGGCCAATCGAACCCAAGGCAATGCCGGAGGAGTTGGTATTGGTGGATTGGGTTTGGGAGAAGTATGGGGAAGGCAGTTTACTGGAAGTGATGGATCCAAGGCTAAATGGCGATTATAATGAGGCCGAGGCCGTATCGGTTTTGAAATTGGGACTGTTCTGTTCAAATGATGTGCTGATGGCTCGGCCTAGTATGAGGCAGGTGATGCGGTTTTTGGACGGTGAGCTCAGCGTCCCCGACAATCTCAGCGCCCCGAGAGTCGTCGAGGGAAGGAAGAATCACGGCGAAGGGTTCGACGATTTCGTGAACTCATTTGCATCTTCATCATTTAACAATGTATCACTAAATCAATCCCCCCGGATGATGATGGAAAGAGATTTGCGTTGA 1995 44.21 MPNFLSFSLFLSTLFSLSSSSNLFFPGFHTNNITLTDTAQIQPNGLLKLTNDTSRLQGHAFYNSAIRFKNSSSSKSLSFSTAFAFSIVPEYPTLGGHGLAFVISPSITLRGLPSQYLGLLNASDKGNFSNHLFAVEFDTVQDFEFFDINDNHVGININSMVSNASTTAAYFVDDNGDKKQNLTLKSGRPIQAWIDYDSVGNVLNVMLSPFSTKPKKAILSYNVDLSPILQENMFVGFSASTGLLASSHYVLGWSFSVNGVAQSLDLESLPSLPGPKKKHVGLTIGVSVSAFVIAVLAICIAVYIVWKIKNADVIEAWELEIGPHRYSYKELKRATKRFRDKELLGRGGFGKVYKGTLPNSRTEVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDYMENGSLDNYLFDEPKVILNWEQRFRIIKGVASGLLYLHEGYEQVVIHRDIKASNVLLDSELNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTGSDVYAFGALLLEVACGRRPIEPKAMPEELVLVDWVWEKYGEGSLLEVMDPRLNGDYNEAEAVSVLKLGLFCSNDVLMARPSMRQVMRFLDGELSVPDNLSAPRVVEGRKNHGEGFDDFVNSFASSSFNNVSLNQSPRMMMERDLR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1731887 1734175 + evm.model.ptg000018l.444 HCH11g0171 553638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0171 664 Gene3D Phosphorylase Kinase; domain 1 323 414 - -
HCH11g0171 664 ProSitePatterns Protein kinases ATP-binding region signature. 344 367 IPR017441 GO:0005524(InterPro)
HCH11g0171 664 SMART serkin_6 338 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0171 664 FunFam L-type lectin-domain containing receptor kinase S.4 415 621 - -
HCH11g0171 664 PANTHER - 28 615 IPR050528 GO:0005886(PANTHER)
HCH11g0171 664 FunFam L-type lectin-domain containing receptor kinase S.4 19 263 - -
HCH11g0171 664 CDD lectin_legume_LecRK_Arcelin_ConA 26 259 IPR001220 GO:0030246(InterPro)
HCH11g0171 664 Pfam Protein kinase domain 339 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0171 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0171 664 CDD STKc_IRAK 344 610 - -
HCH11g0171 664 FunFam L-type lectin-domain containing receptor kinase S.1 323 414 - -
HCH11g0171 664 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0171 664 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
HCH11g0171 664 Gene3D - 21 268 - -
HCH11g0171 664 SUPERFAMILY Protein kinase-like (PK-like) 320 622 IPR011009 -
HCH11g0171 664 Pfam Legume lectin domain 22 269 IPR001220 GO:0030246(InterPro)
HCH11g0171 664 Gene3D Transferase(Phosphotransferase) domain 1 415 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0171 HCH-Chr11:1731887 HCH9g0693 HCH-Chr9:4616590 2.00E-225 dispersed
HCH11g0171 HCH-Chr11:1731887 HCH11g0172 HCH-Chr11:1737807 3.40E-196 tandem
HCH5g0921 HCH-Chr5:7672649 HCH11g0171 HCH-Chr11:1731887 1.80E-62 transposed
HCH6g0882 HCH-Chr6:43630711 HCH11g0171 HCH-Chr11:1731887 8.40E-118 transposed
HCH7g0372 HCH-Chr7:2680043 HCH11g0171 HCH-Chr11:1731887 7.50E-98 transposed
HCH11g0171 HCH-Chr11:1731887 HCH9g0690 HCH-Chr9:4598386 1.40E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81042 PF00139 Lectin_legB 1.30E-75 CL0004 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0171 - - - 0.0