Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0172 ATGTCTAATTCTATGATCAGAGATGAAACCATGTTCTTCTTCAAGCTTACAATTCTTGTCTCTCTACTTATGAGCTGTGTTTTATCATCTGCTTCTGAAGATCTTGGATTCATCTTCAATGGCTTCCAATCTGCTAATCTAACACTTGATGGAATAGCTGTTGTTACCTCCAATGGTCTTTTGAAGCTGACCAATGAGACTAGGCAAAGAAGTGGGCATGCCTTTTATACTAATCCTGTAAACTTTGTCAACTCCTTCCATAGAACCTCTTCTTTCTCCACCACTTTTGTCTTTGCCATTATCTCTGAATACCCGAATCTTAGCGGCCATGGAATCGCCTTCGTCGTGGCTCCGACGAGAGGTCTCCCCGGTGCTCTTCCAAGCCAGTATCTTGGCCTTTTCAATGGGAGTAACAATGGAAATGCAACCAACCACGTATTTGCAGTAGAGCTGGACACAATTCAGAGCACAGAATTCAAAGACATAAATGAGAATCATGTAGGCATAGACATAAATGGCTTGGTTTCTGAGAAAGCTTATTCAGCTGGATATTATTCAGACAGTGATGGAGAATTCAAAAACTTAACTCTCATCAGTGGCCATCCAATGCAAATCTGGATAGAATATGATGCTTCCAACAAAGAAATCAATGTTACATTAGCCCCCATAGGAATTTCCAAACCAAAATCTCCACTTTTGTCTTTGTCCAAAGATCTCTCATCTATCATAAACAACAACACCAACATGTTCATTGGTTTCTCATCTGCTACTGGCTCAGTCTCAACTTCTCATTACATCTTGGGATGGAGTTTTAGAATCAATGGGAAGGCTCAAAATCTCGATTTTTCGAAACTTCCGAAACTTCCCAAGAAAAAAGAGAGATCTAAGTTTTTAACAATTGGGTTGCCTTTGATCTCTGTGGGACTTGTTTTGTTAGTGATTTCAGGCATTGTTCATGTTGTTAGAAGGAAGATAAAGTTTGCAGAGGTAATGGAGGATTGGGAGCTTGAATATGGCCCTCATAGATTCAAGTACAAAGATTTATATATTGCTACAAATGGATTTAGAGAAAAAGAGCTTTTGGGTTCTGGTGGATTTGGAAGAGTTTACAAAGGAACATTAAAAAAATCCAAAACTGAAATTGCTGTCAAGAGAGTCTCTCATGAATCAAGACAAGGGATGAAAGAATTTATAGCTGAAATCATCAGTCTCGGCAGGCTACAACATCGAAACCTCGTACAGCTCCTCGGTTATTGCAGACGTAACGGAGAGTTACTTTTAGTCTATGATTACATGCCTAATGGAAGCTTAGACAAATTTTTATTCAATCAACCAAATGGCACAAATCCTACTCTCAATTGGAACCAAAGATTCAGAATAGTGAAAGGAGTAGCTTTGGGACTTCGTTACTTGCATGAAGAATGGGAACAAGTCGTGATTCACCGAGACGTAAAAGCGAGTAACGTCTTGCTAGACGACGAGTTCAACGGAAGGTTAGGAGATTTCGGGTTAGCAAGACTTTACGACCATGGAACAAATCCTCAAACAACACACATTGTTGGAACCTTGGGATATTTAGCACCAGAACACACTAGAACAGGCAGGCCAACAACCCAATTGGATGTTTTTGCTTTTGGTGCTTTTTTACTTGAAGTTGCAAGTGGGAAAAGGCCAATTGAGATGAGAGAAATGGAAGATGTAATATTGGTTGATTGGGTGTTTTCTTGTTGGGCTAAAGGAGAGATTGTTGAAGCAAGAGACCAAAACTTGGGGATGGAATATGATAAAGAGGAAATGGAAATGGTGTTGAAATTGGGATTGTTGTGTTCTAATTCAAATCCTATAGCAAGGCCTAGTATGAGACAAGTGGTGCAATATTTAGAGGGTGATGTTCCAATGCCAGAGATGGGTTCTTTTGAGGTTTCTGGTGGTGGATTTGAAGGTTTTGATGATGTTGCAATTGCTATGTCTTGTCCTTCTTCCATGGAGAAAGCTTTTCATCATTCTTCTGATGCACAATCTCTTCTCTCTGGTGGTCGTTGA 2043 39.79 MSNSMIRDETMFFFKLTILVSLLMSCVLSSASEDLGFIFNGFQSANLTLDGIAVVTSNGLLKLTNETRQRSGHAFYTNPVNFVNSFHRTSSFSTTFVFAIISEYPNLSGHGIAFVVAPTRGLPGALPSQYLGLFNGSNNGNATNHVFAVELDTIQSTEFKDINENHVGIDINGLVSEKAYSAGYYSDSDGEFKNLTLISGHPMQIWIEYDASNKEINVTLAPIGISKPKSPLLSLSKDLSSIINNNTNMFIGFSSATGSVSTSHYILGWSFRINGKAQNLDFSKLPKLPKKKERSKFLTIGLPLISVGLVLLVISGIVHVVRRKIKFAEVMEDWELEYGPHRFKYKDLYIATNGFREKELLGSGGFGRVYKGTLKKSKTEIAVKRVSHESRQGMKEFIAEIISLGRLQHRNLVQLLGYCRRNGELLLVYDYMPNGSLDKFLFNQPNGTNPTLNWNQRFRIVKGVALGLRYLHEEWEQVVIHRDVKASNVLLDDEFNGRLGDFGLARLYDHGTNPQTTHIVGTLGYLAPEHTRTGRPTTQLDVFAFGAFLLEVASGKRPIEMREMEDVILVDWVFSCWAKGEIVEARDQNLGMEYDKEEMEMVLKLGLLCSNSNPIARPSMRQVVQYLEGDVPMPEMGSFEVSGGGFEGFDDVAIAMSCPSSMEKAFHHSSDAQSLLSGGR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1737807 1741219 + evm.model.ptg000018l.443 HCH11g0172 553639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0172 680 FunFam Lectin-domain containing receptor kinase A4.3 340 431 - -
HCH11g0172 680 PANTHER - 41 634 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
HCH11g0172 680 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
HCH11g0172 680 ProSiteProfiles Protein kinase domain profile. 355 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0172 680 Pfam Legume lectin domain 35 286 IPR001220 GO:0030246(InterPro)
HCH11g0172 680 Gene3D Transferase(Phosphotransferase) domain 1 432 634 - -
HCH11g0172 680 Pfam Protein tyrosine and serine/threonine kinase 358 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0172 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 291 IPR013320 -
HCH11g0172 680 Gene3D - 33 287 - -
HCH11g0172 680 FunFam L-type lectin-domain containing receptor kinase S.4 432 639 - -
HCH11g0172 680 CDD STKc_IRAK 361 629 - -
HCH11g0172 680 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
HCH11g0172 680 FunFam L-type lectin-domain containing receptor kinase V.9 34 278 - -
HCH11g0172 680 SUPERFAMILY Protein kinase-like (PK-like) 336 635 IPR011009 -
HCH11g0172 680 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524(InterPro)
HCH11g0172 680 SMART serkin_6 355 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0172 680 CDD lectin_legume_LecRK_Arcelin_ConA 37 275 IPR001220 GO:0030246(InterPro)
HCH11g0172 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0063 HCH-Chr11:997206 HCH11g0172 HCH-Chr11:1737807 3.60E-161 dispersed
HCH11g0172 HCH-Chr11:1737807 HCH9g0690 HCH-Chr9:4598386 9.60E-255 dispersed
HCH11g0171 HCH-Chr11:1731887 HCH11g0172 HCH-Chr11:1737807 3.40E-196 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81043 PF00069 Pkinase 7.90E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0172 - - - 0.0