Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0186 ATGGATCCAAGAGTTAGAAGATATGATGGTTCCGTGAATGGAATCCTTGTTGGTAATCGATCTTTCACGGTTCAATCAGAAGAGAATTCGGTTGGAGGATCGAGATTCCAAAGCTCCATTTTGGATCATGACTTTCAGGAATTTCATTGCTTACCCTCTGATCCATCACCACCAAGTAATATAGCTTCATGTTCTAGTGTTGTTACCTCATCTTCTAATGGGAGTCATGAGGAAGACTTTTTGGAAGATTGTGATTTTTCTGATGCTATTTTGAGATATATAAATCAGATGCTTATGGAAGAAGATATGGAGGATAAGACTTGTATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAACCGTTCTATGATGTACTTGGGAAAAAATACCCTCCTTCCCCGGAAATTGAAAGACCATTGACCTTTCAATACAGTGGTGGCCTCAATGGTGATCTTTGCGGGGATTATAATGATGACCTTAGTAGTTACAATGATGGTTTCTATGTCGGTGATGACAACCCGATTCAAGCTCTCAGTGAAGATGTATCTCAAATAAGGCACACGTTACTTAATACCATATCTCCCTCATCTAATAGCTCCACAAATAGTCTATTTAGTGGGGTGGATGGGTGGGTGGACTTTTCGAATAATACAATTCAAGTTACCGAATCTAGTAACAGAAGTCAGTCTATTTTTCAATTTCAAAAGGGCATTGAAGAGGCAAACAAGTTTTTACCAGGTGGGAATGATTTGTTTTTTAAGGTCAATGGGTTAGTAGCTCAGGATCCGAACAAGGGGACTAGCCAGGTCTTTGTGAAGGCAGAGAGAAAGAATGAGGTGAATATATTGCCACTTGAATCACGAGGAAGAAAGAATCCTCATGATGAGGATGGAGACTTGGGAGAAGAGAGAAGTAGCAAGCTAGCAGCGGTATTTTCAGAGTCGATTTTGCGATCTAAGTTTTTTGATATCGTGTTGCTTTGCAGTGAGGGGGAGGGACGAGAGCGGTTAGTATCATTTCGAAAGGAATTGCAGAATGCTAAAATCAGAAGTATGCTTCAAAATGGGCAATTAAAAGAATCAAGTGGAGGTCGGGGTCGTCGAAAGAAGCAGAGTGGAAAAAAGGAGGTTGTGGATTTGAGAACTCTTTTAATTCACTGTGCACAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTATAAGACAGATTCGGCAACATTCTTCTCCTTTCGGGGATGGAAATCAAAGGCTGGCTAGTTGTTTTGCTGATGGTCTAGAGGGACGTATGGCGGGTACTGGTAGCCAGATTTATAAAGGTTTTCTTAATAAAAGAACGTCCGCTGCTGATATATTGAAAGCTTACCACCTGTACCTTGCAGCATGCCCATTTAGGAAGATCTCTAATTTTACTTCAAACAAGACTATAATGAATGCCGCAGAAAATGCAACGCGGGTTCATATCATAGATTTTGGTATCCTTTATGGTTTCCAATGGCCTACTTTTATTCAAAGGCTTTCTTGGAGACCAGGAGGACCTCCAAGGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGCTTTCGTCCAGCAGAGAGAGTTGAGGAAACTGGACGCCGCTTGGCGAACTACGCTGAGAGTTTCAATGTTCCATTTGAGTACATCCCTATAGCAAAAAGATGGGAAACTATCACGGTCGAAGATCTCAATATTGACAAGGATGAGTTCCTAGTTGTGAACTGTTTGTATCGAGCTAAAAACTTGCATGATGAGAGTGTGGCTGCAGAGAGTGCTAGAAATATTGTTCTTGGATTGATACACAAAATTAATCCCAACATATACATCCATGGTGTTGTTAATGGGGCATACAATGCCCCCTTCTTTGTAACCAGATTTCGAGAGGCTTTGTTTCACTTTTCTGCCATTTTCGATATGCTTGAAACTGTTGTACCTCGTGAGGACTGGGAGCGAATGGTGTTAGAGAAAGAAATTTTTGGCAAAGAGGCTTTAAATGTCATAGCGTGCGAGGGATGGGAGAGAGTGGAAAGACCAGAAACGTACAAGCAATGGCAATTCGGAATCATGAGGGCCGGATTTGTGCAGCAGCCTTTTGATCCTGAGATTTTGGAGAGAGCAGTTGAAAAGGTGAGGACAAGTTACCACAAAGATTTTTTGATCGATGAAGACAGTAGATGGATGTTGCAGGGATGGAAAGGTCGAATTCTATTTGCTCTTTCTGCATGGAAACCTGCTGCTTAG 2268 41.71 MDPRVRRYDGSVNGILVGNRSFTVQSEENSVGGSRFQSSILDHDFQEFHCLPSDPSPPSNIASCSSVVTSSSNGSHEEDFLEDCDFSDAILRYINQMLMEEDMEDKTCMLQDSLDLQAAEKPFYDVLGKKYPPSPEIERPLTFQYSGGLNGDLCGDYNDDLSSYNDGFYVGDDNPIQALSEDVSQIRHTLLNTISPSSNSSTNSLFSGVDGWVDFSNNTIQVTESSNRSQSIFQFQKGIEEANKFLPGGNDLFFKVNGLVAQDPNKGTSQVFVKAERKNEVNILPLESRGRKNPHDEDGDLGEERSSKLAAVFSESILRSKFFDIVLLCSEGEGRERLVSFRKELQNAKIRSMLQNGQLKESSGGRGRRKKQSGKKEVVDLRTLLIHCAQAVAADDHRNASELIRQIRQHSSPFGDGNQRLASCFADGLEGRMAGTGSQIYKGFLNKRTSAADILKAYHLYLAACPFRKISNFTSNKTIMNAAENATRVHIIDFGILYGFQWPTFIQRLSWRPGGPPRLRITGIEFPQPGFRPAERVEETGRRLANYAESFNVPFEYIPIAKRWETITVEDLNIDKDEFLVVNCLYRAKNLHDESVAAESARNIVLGLIHKINPNIYIHGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMVLEKEIFGKEALNVIACEGWERVERPETYKQWQFGIMRAGFVQQPFDPEILERAVEKVRTSYHKDFLIDEDSRWMLQGWKGRILFALSAWKPAA 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1806500 1808767 - evm.model.ptg000018l.429 HCH11g0186 553653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0186 755 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 362 751 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH11g0186 755 MobiDBLite consensus disorder prediction 352 375 - -
HCH11g0186 755 Pfam GRAS domain family 381 752 IPR005202 -
HCH11g0186 755 ProSiteProfiles GRAS family profile. 372 752 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0186 HCH-Chr11:1806500 HCH2g0668 HCH-Chr2:50476335 2.10E-61 dispersed
HCH6g0508 HCH-Chr6:20554156 HCH11g0186 HCH-Chr11:1806500 8.10E-40 transposed
HCH11g0186 HCH-Chr11:1806500 HCH13g0493 HCH-Chr13:3437958 3.40E-192 wgd
HCH11g0186 HCH-Chr11:1806500 HCH2g1073 HCH-Chr2:53712534 3.80E-159 wgd
HCH11g0186 HCH-Chr11:1806500 HCH3g1373 HCH-Chr3:51501680 1.50E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32523 PF03514 GRAS 3.40E-114 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0186 K27753 - csv:101205887 1142.1