Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0209 | ATGGGAGAAGCAGTAGCTGGTTTGGCTGTAGTAGTAACAAATGAGCCTATTCAAAGTACTGAATTGAAGCGAGACCATCAGTGTGTTGCTGAAGGTACGGAACTTGAGTCATTTAACAACAATAATAATAGCAGTGATAAGAAGCCGGCGAAAGAAGTTTCTAATGAAGACGTACGGTCAGAAGTTTCTAATCCTGGTGTTTCGCCAAAAGGAAATCATTTCCAAGATATCTCTAGCCAACCGGATATGTTGGAGAATGCTTCTAACCCAGTCGAGCGTGGGGACCTCGCGTCCGCATGTTCGGGAAATTCAAGCTCAGAGGATATTTTGAGCGATGGTGTGCGATGTGGGAATGGCCTGGCTCAAAATGAAGTTAATACGTGTGTTAATGGTAATGGTAATGCTGAGGTCTCAAGGTTTGTGCTGGAGATTCCTAAGCATGTTAGTTCAACTGGAATTAGGAAAATTACCTTTAAATTCAGTAAGAAAAAGGTGGATAATCATAATAATGAGTTATTGGCCTCGATGGACGGAAATTCTGATAAGGAACATCAACCGGATCCTTCAATGGTGGATGAAGCGTATATGGAAACATCTACATTTTCTTTAGGTTCTAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCGAACAATTATCCCACGAATGTGAAAAAGTTACTAGCAACTCGCATACTTGATGGTGCTTTAGTGAAGTATATTTCCACGACTAGTGAGATTAAGCTACATGGTATTATACACGGTGGAGGATATGTGTGTGGATGTCAGTTCTGCAATTTCACGGTTATTCTTAGTGCTTACGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATTTCTGGATAATGGGAGGCCGATTTATAGCGTCATACAAGAAATCAAGAGTGCTCCTCTTAGTATGTTGGATGAAGTGATAATGGATGTGGCTGGTTCATCTGTTAACATGGATTACTTTGAGGCTTGGAAAGTGAGTTTCTACCAGAATGATTCAAGTGTCGAAATGGAAACTGATGACGTGAAGCTTCCTAGATTGCCTCATCTGATTGAGAGAGCAAACCATTACTTATCCTACCCGGTCAAGCAACAGAAGAAAACTACAGAAAGAGGCACAAAAAGAAGGGACAATGATCTTCACAGGTTACTTTTCATGCCAAATGGGCTTCCAGATGGAGCTGAGCTGGCATACTTTATCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGTATAGTCTGTAGTCACTGCAACCGAGAGATCAGTCCTTCCCAGTTTGAAGCTCATGCAGGCATGGCAGCCAGACGTCAACCCTATCGCCACATTTATACTACCAATGGTCTTACACTTCATGATATTGCTATTTCATTGGCTAGTGGTCAAAAACTTACCTCTGGAGACAGTGATGATATGTGTGCTGTATGTGGTAATGGAGGGGATCTGATTTTTTGTGATCACTGCCCTCGAGCTTTCCACACAGTTTGCTTGCATCTACAAAGCGTTCCTGAAGGAGTTTGGTGTTGCCCGAATTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCGGGAGGATCTTCGAGTTTTACAAAACCAATTGTATTTAGGTTGACACGGGTTGTTAAAGCTCCAGAGTATGAAATTGGAGGTTGTGTTGTTTGCAGGCGGCATGATTTTAGTGCTGCTAAATTTGATGAGCGGACTGTACTGCTATGCGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGAGACTGGGTTATGCGATTTGAAAGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGACTGCAATCATATCCACTTGGCCCTTCAGAATATAGTTTTGAATGGGGCACAAACCATTCCAGAGTCATTGTCAGATCTAATAATTAAGAAGCATGTTGGGAAAGGATTTATTGATGAAGCTCCTAGCGATGTTCGATGGCAAATTTTAAGTGGAAAAAGTCGATATCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTTCTATTTTTCGAGAGTGCTTTGACCCTATTGTTGCAAAATCAGGGCGTGACTTGATTCCTGTTATGGTTTATGGGAGAAATATTTCTGGACAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCAGTAGTTGTATCAGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATAGTTGCCACGAGTAGAGAACATCAAGGAAAAGGTTACTTCCAAGTGTTGTTTTCCTGTATAGAGAAGCTGCTTTCTTCCCTAAATGTGGAAAACCTTGTACTCCCTGCAGCCGAGGATGCAGAATCAATCTGGACGGAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACATTTAACAAAGTATATGAGGGAGGTCCAGTTAACCATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGGAGCGACCGACGTTATGA | 2508 | 41.71 | MGEAVAGLAVVVTNEPIQSTELKRDHQCVAEGTELESFNNNNNSSDKKPAKEVSNEDVRSEVSNPGVSPKGNHFQDISSQPDMLENASNPVERGDLASACSGNSSSEDILSDGVRCGNGLAQNEVNTCVNGNGNAEVSRFVLEIPKHVSSTGIRKITFKFSKKKVDNHNNELLASMDGNSDKEHQPDPSMVDEAYMETSTFSLGSNKMELKMSKKVLPNNYPTNVKKLLATRILDGALVKYISTTSEIKLHGIIHGGGYVCGCQFCNFTVILSAYEFEQHAGFKTRHPNNHIFLDNGRPIYSVIQEIKSAPLSMLDEVIMDVAGSSVNMDYFEAWKVSFYQNDSSVEMETDDVKLPRLPHLIERANHYLSYPVKQQKKTTERGTKRRDNDLHRLLFMPNGLPDGAELAYFIKGQKILGGYKQGNGIVCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTSGDSDDMCAVCGNGGDLIFCDHCPRAFHTVCLHLQSVPEGVWCCPNCRDKVGSSLKAASGGSSSFTKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDERTVLLCDQCEREFHVGCLRETGLCDLKELPKDKWFCCDDCNHIHLALQNIVLNGAQTIPESLSDLIIKKHVGKGFIDEAPSDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIEKLLSSLNVENLVLPAAEDAESIWTEKLGFRKMSEEHLTKYMREVQLTIFNGTSMLEKVVERPTL | 835 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1972436 | 1980377 | + | evm.model.ptg000018l.406 | HCH11g0209 | 553676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0209 | 835 | ProSiteProfiles | Zinc finger PHD-type profile. | 562 | 623 | IPR019787 | - | |
HCH11g0209 | 835 | ProSitePatterns | Zinc finger PHD-type signature. | 486 | 525 | IPR019786 | - | |
HCH11g0209 | 835 | MobiDBLite | consensus disorder prediction | 33 | 48 | - | - | |
HCH11g0209 | 835 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 714 | 807 | IPR016181 | - | |
HCH11g0209 | 835 | Pfam | PHD-finger | 486 | 525 | IPR019787 | - | |
HCH11g0209 | 835 | ProSitePatterns | Zinc finger PHD-type signature. | 565 | 620 | IPR019786 | - | |
HCH11g0209 | 835 | PANTHER | AUTOIMMUNE REGULATOR | 41 | 831 | - | GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER) | |
HCH11g0209 | 835 | MobiDBLite | consensus disorder prediction | 33 | 104 | - | - | |
HCH11g0209 | 835 | SMART | PHD_3 | 564 | 621 | IPR001965 | - | |
HCH11g0209 | 835 | SMART | PHD_3 | 485 | 526 | IPR001965 | - | |
HCH11g0209 | 835 | SUPERFAMILY | FYVE/PHD zinc finger | 563 | 618 | IPR011011 | - | |
HCH11g0209 | 835 | MobiDBLite | consensus disorder prediction | 59 | 86 | - | - | |
HCH11g0209 | 835 | FunFam | PHD finger family protein | 662 | 829 | - | - | |
HCH11g0209 | 835 | SUPERFAMILY | FYVE/PHD zinc finger | 481 | 529 | IPR011011 | - | |
HCH11g0209 | 835 | FunFam | PHD zinc finger protein | 563 | 623 | - | - | |
HCH11g0209 | 835 | Pfam | Tify domain binding domain | 252 | 306 | IPR032308 | - | |
HCH11g0209 | 835 | Pfam | Tify domain binding domain | 419 | 468 | IPR032308 | - | |
HCH11g0209 | 835 | ProSiteProfiles | Zinc finger PHD-type profile. | 483 | 528 | IPR019787 | - | |
HCH11g0209 | 835 | Gene3D | - | 665 | 830 | - | - | |
HCH11g0209 | 835 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 563 | 623 | IPR013083 | - | |
HCH11g0209 | 835 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 474 | 547 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0209 | HCH-Chr11:1972436 | HCH2g1222 | HCH-Chr2:54604066 | 8.40E-152 | dispersed | |
HCH1g0472 | HCH-Chr1:53309673 | HCH11g0209 | HCH-Chr11:1972436 | 2.40E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32526 | PF16135 | TDBD | 6.60E-12 | No_clan | HCH | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0209 | - | - | - | 0.0 |