Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0209 ATGGGAGAAGCAGTAGCTGGTTTGGCTGTAGTAGTAACAAATGAGCCTATTCAAAGTACTGAATTGAAGCGAGACCATCAGTGTGTTGCTGAAGGTACGGAACTTGAGTCATTTAACAACAATAATAATAGCAGTGATAAGAAGCCGGCGAAAGAAGTTTCTAATGAAGACGTACGGTCAGAAGTTTCTAATCCTGGTGTTTCGCCAAAAGGAAATCATTTCCAAGATATCTCTAGCCAACCGGATATGTTGGAGAATGCTTCTAACCCAGTCGAGCGTGGGGACCTCGCGTCCGCATGTTCGGGAAATTCAAGCTCAGAGGATATTTTGAGCGATGGTGTGCGATGTGGGAATGGCCTGGCTCAAAATGAAGTTAATACGTGTGTTAATGGTAATGGTAATGCTGAGGTCTCAAGGTTTGTGCTGGAGATTCCTAAGCATGTTAGTTCAACTGGAATTAGGAAAATTACCTTTAAATTCAGTAAGAAAAAGGTGGATAATCATAATAATGAGTTATTGGCCTCGATGGACGGAAATTCTGATAAGGAACATCAACCGGATCCTTCAATGGTGGATGAAGCGTATATGGAAACATCTACATTTTCTTTAGGTTCTAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCGAACAATTATCCCACGAATGTGAAAAAGTTACTAGCAACTCGCATACTTGATGGTGCTTTAGTGAAGTATATTTCCACGACTAGTGAGATTAAGCTACATGGTATTATACACGGTGGAGGATATGTGTGTGGATGTCAGTTCTGCAATTTCACGGTTATTCTTAGTGCTTACGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATTTCTGGATAATGGGAGGCCGATTTATAGCGTCATACAAGAAATCAAGAGTGCTCCTCTTAGTATGTTGGATGAAGTGATAATGGATGTGGCTGGTTCATCTGTTAACATGGATTACTTTGAGGCTTGGAAAGTGAGTTTCTACCAGAATGATTCAAGTGTCGAAATGGAAACTGATGACGTGAAGCTTCCTAGATTGCCTCATCTGATTGAGAGAGCAAACCATTACTTATCCTACCCGGTCAAGCAACAGAAGAAAACTACAGAAAGAGGCACAAAAAGAAGGGACAATGATCTTCACAGGTTACTTTTCATGCCAAATGGGCTTCCAGATGGAGCTGAGCTGGCATACTTTATCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGTATAGTCTGTAGTCACTGCAACCGAGAGATCAGTCCTTCCCAGTTTGAAGCTCATGCAGGCATGGCAGCCAGACGTCAACCCTATCGCCACATTTATACTACCAATGGTCTTACACTTCATGATATTGCTATTTCATTGGCTAGTGGTCAAAAACTTACCTCTGGAGACAGTGATGATATGTGTGCTGTATGTGGTAATGGAGGGGATCTGATTTTTTGTGATCACTGCCCTCGAGCTTTCCACACAGTTTGCTTGCATCTACAAAGCGTTCCTGAAGGAGTTTGGTGTTGCCCGAATTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCGGGAGGATCTTCGAGTTTTACAAAACCAATTGTATTTAGGTTGACACGGGTTGTTAAAGCTCCAGAGTATGAAATTGGAGGTTGTGTTGTTTGCAGGCGGCATGATTTTAGTGCTGCTAAATTTGATGAGCGGACTGTACTGCTATGCGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGAGACTGGGTTATGCGATTTGAAAGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGACTGCAATCATATCCACTTGGCCCTTCAGAATATAGTTTTGAATGGGGCACAAACCATTCCAGAGTCATTGTCAGATCTAATAATTAAGAAGCATGTTGGGAAAGGATTTATTGATGAAGCTCCTAGCGATGTTCGATGGCAAATTTTAAGTGGAAAAAGTCGATATCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTTCTATTTTTCGAGAGTGCTTTGACCCTATTGTTGCAAAATCAGGGCGTGACTTGATTCCTGTTATGGTTTATGGGAGAAATATTTCTGGACAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCAGTAGTTGTATCAGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATAGTTGCCACGAGTAGAGAACATCAAGGAAAAGGTTACTTCCAAGTGTTGTTTTCCTGTATAGAGAAGCTGCTTTCTTCCCTAAATGTGGAAAACCTTGTACTCCCTGCAGCCGAGGATGCAGAATCAATCTGGACGGAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACATTTAACAAAGTATATGAGGGAGGTCCAGTTAACCATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGGAGCGACCGACGTTATGA 2508 41.71 MGEAVAGLAVVVTNEPIQSTELKRDHQCVAEGTELESFNNNNNSSDKKPAKEVSNEDVRSEVSNPGVSPKGNHFQDISSQPDMLENASNPVERGDLASACSGNSSSEDILSDGVRCGNGLAQNEVNTCVNGNGNAEVSRFVLEIPKHVSSTGIRKITFKFSKKKVDNHNNELLASMDGNSDKEHQPDPSMVDEAYMETSTFSLGSNKMELKMSKKVLPNNYPTNVKKLLATRILDGALVKYISTTSEIKLHGIIHGGGYVCGCQFCNFTVILSAYEFEQHAGFKTRHPNNHIFLDNGRPIYSVIQEIKSAPLSMLDEVIMDVAGSSVNMDYFEAWKVSFYQNDSSVEMETDDVKLPRLPHLIERANHYLSYPVKQQKKTTERGTKRRDNDLHRLLFMPNGLPDGAELAYFIKGQKILGGYKQGNGIVCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTSGDSDDMCAVCGNGGDLIFCDHCPRAFHTVCLHLQSVPEGVWCCPNCRDKVGSSLKAASGGSSSFTKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDERTVLLCDQCEREFHVGCLRETGLCDLKELPKDKWFCCDDCNHIHLALQNIVLNGAQTIPESLSDLIIKKHVGKGFIDEAPSDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIEKLLSSLNVENLVLPAAEDAESIWTEKLGFRKMSEEHLTKYMREVQLTIFNGTSMLEKVVERPTL 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1972436 1980377 + evm.model.ptg000018l.406 HCH11g0209 553676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0209 835 ProSiteProfiles Zinc finger PHD-type profile. 562 623 IPR019787 -
HCH11g0209 835 ProSitePatterns Zinc finger PHD-type signature. 486 525 IPR019786 -
HCH11g0209 835 MobiDBLite consensus disorder prediction 33 48 - -
HCH11g0209 835 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 714 807 IPR016181 -
HCH11g0209 835 Pfam PHD-finger 486 525 IPR019787 -
HCH11g0209 835 ProSitePatterns Zinc finger PHD-type signature. 565 620 IPR019786 -
HCH11g0209 835 PANTHER AUTOIMMUNE REGULATOR 41 831 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
HCH11g0209 835 MobiDBLite consensus disorder prediction 33 104 - -
HCH11g0209 835 SMART PHD_3 564 621 IPR001965 -
HCH11g0209 835 SMART PHD_3 485 526 IPR001965 -
HCH11g0209 835 SUPERFAMILY FYVE/PHD zinc finger 563 618 IPR011011 -
HCH11g0209 835 MobiDBLite consensus disorder prediction 59 86 - -
HCH11g0209 835 FunFam PHD finger family protein 662 829 - -
HCH11g0209 835 SUPERFAMILY FYVE/PHD zinc finger 481 529 IPR011011 -
HCH11g0209 835 FunFam PHD zinc finger protein 563 623 - -
HCH11g0209 835 Pfam Tify domain binding domain 252 306 IPR032308 -
HCH11g0209 835 Pfam Tify domain binding domain 419 468 IPR032308 -
HCH11g0209 835 ProSiteProfiles Zinc finger PHD-type profile. 483 528 IPR019787 -
HCH11g0209 835 Gene3D - 665 830 - -
HCH11g0209 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 623 IPR013083 -
HCH11g0209 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 547 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0209 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0209 HCH-Chr11:1972436 HCH2g1222 HCH-Chr2:54604066 8.40E-152 dispersed
HCH1g0472 HCH-Chr1:53309673 HCH11g0209 HCH-Chr11:1972436 2.40E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0209 . 21 830 PHD Transcription Factor Family AT3G53680 53.5 8.6e-245 843.6
HCH9g0644 . 381 509 PHD Transcription Factor Family AT3G53680 53.5 2.8e-38 157.5
HCH2g1111 . 319 445 PHD Transcription Factor Family AT3G53680 54.7 1.4e-37 155.2
HCH1g0472 . 433 559 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 154.8
HCH1g0081 . 13 409 PHD Transcription Factor Family AT5G22260 60.7 6.4e-134 474.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32526 PF16135 TDBD 6.60E-12 No_clan HCH TR