Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0209 ATGGGAGAAGCAGTAGCTGGTTTGGCTGTAGTAGTAACAAATGAGCCTATTCAAAGTACTGAATTGAAGCGAGACCATCAGTGTGTTGCTGAAGGTACGGAACTTGAGTCATTTAACAACAATAATAATAGCAGTGATAAGAAGCCGGCGAAAGAAGTTTCTAATGAAGACGTACGGTCAGAAGTTTCTAATCCTGGTGTTTCGCCAAAAGGAAATCATTTCCAAGATATCTCTAGCCAACCGGATATGTTGGAGAATGCTTCTAACCCAGTCGAGCGTGGGGACCTCGCGTCCGCATGTTCGGGAAATTCAAGCTCAGAGGATATTTTGAGCGATGGTGTGCGATGTGGGAATGGCCTGGCTCAAAATGAAGTTAATACGTGTGTTAATGGTAATGGTAATGCTGAGGTCTCAAGGTTTGTGCTGGAGATTCCTAAGCATGTTAGTTCAACTGGAATTAGGAAAATTACCTTTAAATTCAGTAAGAAAAAGGTGGATAATCATAATAATGAGTTATTGGCCTCGATGGACGGAAATTCTGATAAGGAACATCAACCGGATCCTTCAATGGTGGATGAAGCGTATATGGAAACATCTACATTTTCTTTAGGTTCTAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCGAACAATTATCCCACGAATGTGAAAAAGTTACTAGCAACTCGCATACTTGATGGTGCTTTAGTGAAGTATATTTCCACGACTAGTGAGATTAAGCTACATGGTATTATACACGGTGGAGGATATGTGTGTGGATGTCAGTTCTGCAATTTCACGGTTATTCTTAGTGCTTACGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATTTCTGGATAATGGGAGGCCGATTTATAGCGTCATACAAGAAATCAAGAGTGCTCCTCTTAGTATGTTGGATGAAGTGATAATGGATGTGGCTGGTTCATCTGTTAACATGGATTACTTTGAGGCTTGGAAAGTGAGTTTCTACCAGAATGATTCAAGTGTCGAAATGGAAACTGATGACGTGAAGCTTCCTAGATTGCCTCATCTGATTGAGAGAGCAAACCATTACTTATCCTACCCGGTCAAGCAACAGAAGAAAACTACAGAAAGAGGCACAAAAAGAAGGGACAATGATCTTCACAGGTTACTTTTCATGCCAAATGGGCTTCCAGATGGAGCTGAGCTGGCATACTTTATCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGTATAGTCTGTAGTCACTGCAACCGAGAGATCAGTCCTTCCCAGTTTGAAGCTCATGCAGGCATGGCAGCCAGACGTCAACCCTATCGCCACATTTATACTACCAATGGTCTTACACTTCATGATATTGCTATTTCATTGGCTAGTGGTCAAAAACTTACCTCTGGAGACAGTGATGATATGTGTGCTGTATGTGGTAATGGAGGGGATCTGATTTTTTGTGATCACTGCCCTCGAGCTTTCCACACAGTTTGCTTGCATCTACAAAGCGTTCCTGAAGGAGTTTGGTGTTGCCCGAATTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCGGGAGGATCTTCGAGTTTTACAAAACCAATTGTATTTAGGTTGACACGGGTTGTTAAAGCTCCAGAGTATGAAATTGGAGGTTGTGTTGTTTGCAGGCGGCATGATTTTAGTGCTGCTAAATTTGATGAGCGGACTGTACTGCTATGCGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGAGACTGGGTTATGCGATTTGAAAGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGACTGCAATCATATCCACTTGGCCCTTCAGAATATAGTTTTGAATGGGGCACAAACCATTCCAGAGTCATTGTCAGATCTAATAATTAAGAAGCATGTTGGGAAAGGATTTATTGATGAAGCTCCTAGCGATGTTCGATGGCAAATTTTAAGTGGAAAAAGTCGATATCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTTCTATTTTTCGAGAGTGCTTTGACCCTATTGTTGCAAAATCAGGGCGTGACTTGATTCCTGTTATGGTTTATGGGAGAAATATTTCTGGACAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCAGTAGTTGTATCAGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATAGTTGCCACGAGTAGAGAACATCAAGGAAAAGGTTACTTCCAAGTGTTGTTTTCCTGTATAGAGAAGCTGCTTTCTTCCCTAAATGTGGAAAACCTTGTACTCCCTGCAGCCGAGGATGCAGAATCAATCTGGACGGAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACATTTAACAAAGTATATGAGGGAGGTCCAGTTAACCATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGGAGCGACCGACGTTATGA 2508 41.71 MGEAVAGLAVVVTNEPIQSTELKRDHQCVAEGTELESFNNNNNSSDKKPAKEVSNEDVRSEVSNPGVSPKGNHFQDISSQPDMLENASNPVERGDLASACSGNSSSEDILSDGVRCGNGLAQNEVNTCVNGNGNAEVSRFVLEIPKHVSSTGIRKITFKFSKKKVDNHNNELLASMDGNSDKEHQPDPSMVDEAYMETSTFSLGSNKMELKMSKKVLPNNYPTNVKKLLATRILDGALVKYISTTSEIKLHGIIHGGGYVCGCQFCNFTVILSAYEFEQHAGFKTRHPNNHIFLDNGRPIYSVIQEIKSAPLSMLDEVIMDVAGSSVNMDYFEAWKVSFYQNDSSVEMETDDVKLPRLPHLIERANHYLSYPVKQQKKTTERGTKRRDNDLHRLLFMPNGLPDGAELAYFIKGQKILGGYKQGNGIVCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTSGDSDDMCAVCGNGGDLIFCDHCPRAFHTVCLHLQSVPEGVWCCPNCRDKVGSSLKAASGGSSSFTKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDERTVLLCDQCEREFHVGCLRETGLCDLKELPKDKWFCCDDCNHIHLALQNIVLNGAQTIPESLSDLIIKKHVGKGFIDEAPSDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIEKLLSSLNVENLVLPAAEDAESIWTEKLGFRKMSEEHLTKYMREVQLTIFNGTSMLEKVVERPTL 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1972436 1980377 + evm.model.ptg000018l.406 HCH11g0209 553676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0209 835 ProSiteProfiles Zinc finger PHD-type profile. 562 623 IPR019787 -
HCH11g0209 835 ProSitePatterns Zinc finger PHD-type signature. 486 525 IPR019786 -
HCH11g0209 835 MobiDBLite consensus disorder prediction 33 48 - -
HCH11g0209 835 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 714 807 IPR016181 -
HCH11g0209 835 Pfam PHD-finger 486 525 IPR019787 -
HCH11g0209 835 ProSitePatterns Zinc finger PHD-type signature. 565 620 IPR019786 -
HCH11g0209 835 PANTHER AUTOIMMUNE REGULATOR 41 831 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
HCH11g0209 835 MobiDBLite consensus disorder prediction 33 104 - -
HCH11g0209 835 SMART PHD_3 564 621 IPR001965 -
HCH11g0209 835 SMART PHD_3 485 526 IPR001965 -
HCH11g0209 835 SUPERFAMILY FYVE/PHD zinc finger 563 618 IPR011011 -
HCH11g0209 835 MobiDBLite consensus disorder prediction 59 86 - -
HCH11g0209 835 FunFam PHD finger family protein 662 829 - -
HCH11g0209 835 SUPERFAMILY FYVE/PHD zinc finger 481 529 IPR011011 -
HCH11g0209 835 FunFam PHD zinc finger protein 563 623 - -
HCH11g0209 835 Pfam Tify domain binding domain 252 306 IPR032308 -
HCH11g0209 835 Pfam Tify domain binding domain 419 468 IPR032308 -
HCH11g0209 835 ProSiteProfiles Zinc finger PHD-type profile. 483 528 IPR019787 -
HCH11g0209 835 Gene3D - 665 830 - -
HCH11g0209 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 623 IPR013083 -
HCH11g0209 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 547 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0209 HCH-Chr11:1972436 HCH2g1222 HCH-Chr2:54604066 8.40E-152 dispersed
HCH1g0472 HCH-Chr1:53309673 HCH11g0209 HCH-Chr11:1972436 2.40E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32526 PF16135 TDBD 6.60E-12 No_clan HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0209 - - - 0.0