Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0224 ATGCCGAGAAAAGGAATGAGGAGTCTTCTCTTTCATTGGCCGTCACCGTCGCCGTCAAATTCCATTTCACGATATTCCGTTTCATCGCCGTCAACGTTAACTCCCCGGCGGAGCTTCAACGAGACGATGATAGAGCAAGTCGTGGAATCCGCGGCGGAGATGATAATGAAATGGAATCCAGAATCTTCCTCTTACGCAAAAGTGACTTCATTATTCTACGAAGATAAATCAGAAGCTTTGATTTTCATCAAACGAATCAACGATCTTCAAAGAGCAATGCATTTAATGGATTCCGAGAATCAATTCAATTACTATTCGGAGAAGCTCGTTTACGCTCAGAGTTTGATGGAAATGGCGATGAAAAGGCTTCAGAAAGAATTTTATCAAATCCTCTCCATGAACAGAGCTCATCTCGATCCTGAATCCGTATCCACACGATCCTCCCGCTGCTCCACTAGATCAAGCACTTCCGTTGATTTCGATGATGACGTCATTGAAGACGAAATCCACGTCGTAGGAGATTCTATCTCTGAAGTGGAAAATGTTTCGTCTATAGTCATGGCGGATTTGCGAATCCTAGCGGAGTGTATGATTTCCGCTGGGTATGGTAAAGAATGCGTCGATATGTATAAAGTGATACGGAAATCGATTATCGATGAAGGAATTTATCGATTAGGCGTTGAGAAATTGAGTTTTTCGAGAGTTAATAAGATGGATTGGGAGATTCTCGAGGCGAAGATCAAGAATTGGTTGGAAGCGATTAAGGTCGCGGTTAGGACGTTGTTTAATGGAGAACGGATTCTTTGCGATTACGTTTTCGCAGCGAATGAAGCGATCGGAGAATCTTGTTTCGCGGAGATATCGAGAGATGGAGCTTTGCTTTTGTTTGGATTTCCTGAGCTTGTGGGTAAGAGTAAGAAATCGCCGGAAAAGATGTTTCGTGTTCTCGATATGTATTCGTCGATTTACGAGAATTGGACGGAGATTGAATCGTTGTTCTCCTTTGAATCCACGTCGGGAATTCGATTTCAAGCCCTAACTTCGCTCAGTAAACTCGGCGAGTTAGTCCGTACGATAGTGATGGATTTCGAGTTATCGATTCAGAAGAATTCGTCGAAATCTCCGGTCATTGGCGGCGGAGTTCATTCATTGACGATTCTCGCGATGGATTACCTCACATTCCTCGCCGATTACAGCAACGCGTTGACGGATATTTTTATAGACTGGAATCCGCCGGAAAATGAAAAATCACCTCTACAAGAAATTTACTTCGGAAATCAAGAATCCGATGAATCTCCGTCTTCAGCGATCTCATTACGCATCGGACGGATAATCTTGATCCTTCTCTGCAAGCTCGATCATAAATCGAAACGCTACAAAGACATTTCTCTCGCGTATCTTTTCCTCGCCAATAATCTCCAACACATCATTTCCAAAGTCCGATCGTCGAATCTTCAGTATCTTCTCGGAGACGATTGGATAGCGAAACACGAAGCGAAAGTAAAGCAATTCGCTACGAAATTCGAGTCGCTGTCGTGGAATCGAGTCTTCTCCTCTTTACCGGAAAATCTAACGGAGAGAATCTCACAGGAAGAAGCGCGGAAAGAGATTTTCCGAAACTTCAATCTCGCGTTTCAAGAAACGCATCGGAGGCAGCAATCGTTTTTCGTCCCGGATTCGAAGCTTCGAGACGAAATCAAGCTTTCGATCGGAAGAAAACTCGTATCGTCGTATCAAGATTTCTACAGAACGCATAGAGTTATTGAATCAGGAAATTCAAACCCTAGGCCGTACATCAGATTTTCACCTGAAGATATTGGAAATTACTTATCTGACCTCTACTTTGAGCCTACGGACTGGACGAGCTCTGCCACGTCATCGCCGTCGTCCACGTCGTCATCTCATCGGCGGCAATCGGCGCCTCGTTCACCGGAGCTCCGGTCAAGATAA 1950 44.36 MPRKGMRSLLFHWPSPSPSNSISRYSVSSPSTLTPRRSFNETMIEQVVESAAEMIMKWNPESSSYAKVTSLFYEDKSEALIFIKRINDLQRAMHLMDSENQFNYYSEKLVYAQSLMEMAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDVIEDEIHVVGDSISEVENVSSIVMADLRILAECMISAGYGKECVDMYKVIRKSIIDEGIYRLGVEKLSFSRVNKMDWEILEAKIKNWLEAIKVAVRTLFNGERILCDYVFAANEAIGESCFAEISRDGALLLFGFPELVGKSKKSPEKMFRVLDMYSSIYENWTEIESLFSFESTSGIRFQALTSLSKLGELVRTIVMDFELSIQKNSSKSPVIGGGVHSLTILAMDYLTFLADYSNALTDIFIDWNPPENEKSPLQEIYFGNQESDESPSSAISLRIGRIILILLCKLDHKSKRYKDISLAYLFLANNLQHIISKVRSSNLQYLLGDDWIAKHEAKVKQFATKFESLSWNRVFSSLPENLTERISQEEARKEIFRNFNLAFQETHRRQQSFFVPDSKLRDEIKLSIGRKLVSSYQDFYRTHRVIESGNSNPRPYIRFSPEDIGNYLSDLYFEPTDWTSSATSSPSSTSSSHRRQSAPRSPELRSR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2061486 2063435 + evm.model.ptg000018l.391 HCH11g0224 553691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0224 649 MobiDBLite consensus disorder prediction 619 649 - -
HCH11g0224 649 Pfam Exocyst complex component Exo70 N-terminal 48 132 - -
HCH11g0224 649 Gene3D Exocyst complex component Exo70 66 620 - -
HCH11g0224 649 SUPERFAMILY Cullin repeat-like 76 614 IPR016159 -
HCH11g0224 649 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 615 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH11g0224 649 MobiDBLite consensus disorder prediction 619 639 - -
HCH11g0224 649 Pfam Exo70 exocyst complex subunit C-terminal 248 612 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0224 HCH-Chr11:2061486 HCH6g0062 HCH-Chr6:687870 3.20E-82 dispersed
HCH1g0497 HCH-Chr1:53786940 HCH11g0224 HCH-Chr11:2061486 3.60E-155 wgd
HCH11g0224 HCH-Chr11:2061486 HCH2g1121 HCH-Chr2:53938680 3.00E-165 wgd
HCH11g0224 HCH-Chr11:2061486 HCH3g1304 HCH-Chr3:49769931 9.20E-154 wgd
HCH11g0224 HCH-Chr11:2061486 HCH9g0632 HCH-Chr9:4206381 8.60E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0224 K07195 - csv:101208543 887.871