Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0231 ATGGAAGAACAACCGCCCAATCTCATCATCATGGCTGCTCTCTCCACCCTCTCCCCTTCCCATCTCTCCACTCTCTCCCACTCCCTCTCCTCCGATATCCACCGCCGCCGCCGCCGTCTCTCCATCCTCCTCTCCTCCCCCACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCTCACAAAACTCTCCTCATTTCTCGCTTCCTTCTCTCCACCCTCCGCCGCCTCTCTCTCCCATTTCAACCTCCCCTCCTCCCCCAACACCCCTCCCCGGCCGCCTCCCTCACGCCGCGCGACCTCGATGCCGCCCTCCTCCTTCTCTTCCTCTGCGAAGTAAGGCAACACCAACCCCATGTCTTAGACGCGCCGCTTTCCAAATGGCGCGCGTCTCTCTGCCACCTTTACTCCATATCCATTCTGACACTTTCAAGCCTCCCCATATCCAATACTCCGGCGACTGTTCTGTTGTCGTATATTGATACGGTGACGCGGTGTTGGAAGTTCATCGGTTTTATCGGAAGGTGCGGCGGCGGAGGTGGCAGTGGGAAAGTTATGAGAGAGGTGGCGGCCTCACCTATGGCAGTTGTAGAGCTGCCATCGGTGGAGGTGAGAGGCGGCTGTAGCGGCGGCGATGTGGTGGCGGTGGAGTGTGTGATTTGTACGGAGGAGATTGAAGGAGGGAGAGACGCGTGTCAATTGCCATGTGATCACTTATTCCATTGGCTTTGTATTCTTCCGTGGCTGAGAAAAAGGAACACGTGTCCATGTTGTAGATTTCGTCTTCCTACTGATGATATTTTTGGAGAGATCCAACGGCTGTGGGAGATTCTCATCAGGGCATCTGATGGATGTTAA 867 55.94 MEEQPPNLIIMAALSTLSPSHLSTLSHSLSSDIHRRRRRLSILLSSPTLFSLTLRHLNSLSLSHKTLLISRFLLSTLRRLSLPFQPPLLPQHPSPAASLTPRDLDAALLLLFLCEVRQHQPHVLDAPLSKWRASLCHLYSISILTLSSLPISNTPATVLLSYIDTVTRCWKFIGFIGRCGGGGGSGKVMREVAASPMAVVELPSVEVRGGCSGGDVVAVECVICTEEIEGGRDACQLPCDHLFHWLCILPWLRKRNTCPCCRFRLPTDDIFGEIQRLWEILIRASDGC 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2120038 2120904 + evm.model.ptg000018l.384 HCH11g0231 553698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0231 288 Pfam Ring finger domain 220 262 IPR001841 -
HCH11g0231 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 191 267 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
HCH11g0231 288 SUPERFAMILY RING/U-box 220 268 - -
HCH11g0231 288 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
HCH11g0231 288 SMART ring_2 221 261 IPR001841 -
HCH11g0231 288 CDD RING-H2_PA-TM-RING 220 262 - -
HCH11g0231 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 268 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0231 HCH-Chr11:2120038 HCH1g1085 HCH-Chr1:58583115 2.20E-14 dispersed
HCH11g0231 HCH-Chr11:2120038 HCH2g1068 HCH-Chr2:53680683 4.80E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0231 - - - 0.0