Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0231 | ATGGAAGAACAACCGCCCAATCTCATCATCATGGCTGCTCTCTCCACCCTCTCCCCTTCCCATCTCTCCACTCTCTCCCACTCCCTCTCCTCCGATATCCACCGCCGCCGCCGCCGTCTCTCCATCCTCCTCTCCTCCCCCACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCTCACAAAACTCTCCTCATTTCTCGCTTCCTTCTCTCCACCCTCCGCCGCCTCTCTCTCCCATTTCAACCTCCCCTCCTCCCCCAACACCCCTCCCCGGCCGCCTCCCTCACGCCGCGCGACCTCGATGCCGCCCTCCTCCTTCTCTTCCTCTGCGAAGTAAGGCAACACCAACCCCATGTCTTAGACGCGCCGCTTTCCAAATGGCGCGCGTCTCTCTGCCACCTTTACTCCATATCCATTCTGACACTTTCAAGCCTCCCCATATCCAATACTCCGGCGACTGTTCTGTTGTCGTATATTGATACGGTGACGCGGTGTTGGAAGTTCATCGGTTTTATCGGAAGGTGCGGCGGCGGAGGTGGCAGTGGGAAAGTTATGAGAGAGGTGGCGGCCTCACCTATGGCAGTTGTAGAGCTGCCATCGGTGGAGGTGAGAGGCGGCTGTAGCGGCGGCGATGTGGTGGCGGTGGAGTGTGTGATTTGTACGGAGGAGATTGAAGGAGGGAGAGACGCGTGTCAATTGCCATGTGATCACTTATTCCATTGGCTTTGTATTCTTCCGTGGCTGAGAAAAAGGAACACGTGTCCATGTTGTAGATTTCGTCTTCCTACTGATGATATTTTTGGAGAGATCCAACGGCTGTGGGAGATTCTCATCAGGGCATCTGATGGATGTTAA | 867 | 55.94 | MEEQPPNLIIMAALSTLSPSHLSTLSHSLSSDIHRRRRRLSILLSSPTLFSLTLRHLNSLSLSHKTLLISRFLLSTLRRLSLPFQPPLLPQHPSPAASLTPRDLDAALLLLFLCEVRQHQPHVLDAPLSKWRASLCHLYSISILTLSSLPISNTPATVLLSYIDTVTRCWKFIGFIGRCGGGGGSGKVMREVAASPMAVVELPSVEVRGGCSGGDVVAVECVICTEEIEGGRDACQLPCDHLFHWLCILPWLRKRNTCPCCRFRLPTDDIFGEIQRLWEILIRASDGC | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2120038 | 2120904 | + | evm.model.ptg000018l.384 | HCH11g0231 | 553698 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0231 | 288 | Pfam | Ring finger domain | 220 | 262 | IPR001841 | - | |
HCH11g0231 | 288 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 191 | 267 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
HCH11g0231 | 288 | SUPERFAMILY | RING/U-box | 220 | 268 | - | - | |
HCH11g0231 | 288 | ProSiteProfiles | Zinc finger RING-type profile. | 221 | 262 | IPR001841 | - | |
HCH11g0231 | 288 | SMART | ring_2 | 221 | 261 | IPR001841 | - | |
HCH11g0231 | 288 | CDD | RING-H2_PA-TM-RING | 220 | 262 | - | - | |
HCH11g0231 | 288 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 268 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0231 | HCH-Chr11:2120038 | HCH1g1085 | HCH-Chr1:58583115 | 2.20E-14 | dispersed | |
HCH11g0231 | HCH-Chr11:2120038 | HCH2g1068 | HCH-Chr2:53680683 | 4.80E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0231 | - | - | - | 0.0 |