Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0233 ATGGTTAAACCTTGCTGGAAACCCCATGATGACGACGATACGAATGGACGGGTTGATGGGTTGTTGTGGTCTAAGGACATGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATTCAAGCAAATAATGTTGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGACCAACTCAGGCCCTCAGGGGACTTTCGTCGGAGTTTACGATGGTCATGGCGGAACTGAAGCTTCACGGTTCGTCAACGACAATCTCTTCAGCAATCTCAAAAGATTCGCATCTATGCACCAAAGCATATCAGAAAATGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTCAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGGATCATATGCAATGGACAGCTATATATTGCAAATGCAGGTGATTCCAGAGTGGTGCTTGGAAGAACTGAGAGAGCCACGAAAGAAGTAATTGCCATTCAATTGTCTGAAGAGCACAATGCAAGCATAGACACGGTGAGAGATGAGCTTCGGAGGATTCATTCGGACGATCCTCAAATTGTGGTTCTAAAACACAATGTTTGGCGTGTTAAAGGTATCATACAGATTTCGAGATCCATTGGTGATGCATATTTGAAGAAGGCAAAGTTCAACAGAGATCCATTGCCCTCAAAATTTCAATTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCATCAATATTGGTACACAAACTCCGCCCAGAAGATCAATATCTTATATTTGGTTCTGATGGCCTTTGGGAACACCTTAGCAACCAGAAGGCTGTTGACATTGTCAGCAACTATCCCCGCAATGGAATAGCAAGGAGACTCGTCAAGGCAGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGGGTGAGAAGGCATTTCCATGATGACATTACTGTTATAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCCTCTCCCTGTTCCTTGTCAATCAGAGGAGGAGAAGGTCTCCCTACCTCTGCAAACTCGTAG 1113 44.29 MVKPCWKPHDDDDTNGRVDGLLWSKDMGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNSGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRFASMHQSISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATKEVIAIQLSEEHNASIDTVRDELRRIHSDDPQIVVLKHNVWRVKGIIQISRSIGDAYLKKAKFNRDPLPSKFQLPEPFYKPILSAEPSILVHKLRPEDQYLIFGSDGLWEHLSNQKAVDIVSNYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDPHLINGRPSPCSLSIRGGEGLPTSANS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2132814 2134332 + evm.model.ptg000018l.382 HCH11g0233 553700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0233 370 SMART PP2C_4 24 340 IPR001932 -
HCH11g0233 370 FunFam Phosphatase 2C family protein 23 351 - -
HCH11g0233 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
HCH11g0233 370 Pfam Protein phosphatase 2C 61 311 IPR001932 -
HCH11g0233 370 PANTHER PROTEIN PHOSPHATASE 27 341 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH11g0233 370 CDD PP2Cc 32 342 IPR001932 -
HCH11g0233 370 Gene3D - 21 349 IPR036457 -
HCH11g0233 370 SUPERFAMILY PP2C-like 34 344 IPR036457 -
HCH11g0233 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0233 HCH-Chr11:2132814 HCH14g0682 HCH-Chr14:35329750 9.90E-145 dispersed
HCH1g0512 HCH-Chr1:53977394 HCH11g0233 HCH-Chr11:2132814 3.30E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0233 K01102 - csv:101210750 688.723