Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0239 | ATGAATTGGATACCATGTTCTGGAAATTCAAATAGGAAGGAAAAATCACAGAAGTTGAAGAAATTGGAGTTGCTGAAGAATGGAGTTGATCAGATCAAACCCAATTCAATGAAAATAAATACGAATTCCTCCTTCAATGAGGGATCTAAAAGTGAAGGGTCTGAACATATCAAGGCACAGATTTTCTCATTCCATGAATTGGCAGCTGCTACCAGGAATTTTAGAGCTGACTGTCTTTTGGGAGAGGGCGGTTTTGGCAGAGTTTACCGAGGACATTTGGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTTGATCGCAATGGGTTGCAAGGAAACCGGGAGTTTTTAGTTGAAGTATTGATGTTAAGCCTACTTCATCACCAAAATCTTGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAGAGGCTTCTGATTTATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAATACTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCGGCCCGAGGATTGGAATATTTGCACGACAAAGCTAACCCTCCTGTTATTTATCGAGATTTAAAAAGTTCGAACATTCTGCTCGACGAAGGTTATCGTCCTAAGCTGTCGGATTTTGGATTAGCCAAACTTGGGCCTGTTGGGGACAATACACATGTATCTACCAGGGTCATGGGCACTTATGGATATTGTGCTCCAGAATATGCAATGACCGGTCAGTTAACTCTGAAGTCGGATGTTTATAGCTTCGGTGTTGTTCTTCTAGAAATAATAACAGGCAGGAAGGCAATTGATGATTCGAAAGCTGCAGGAGAGCAAAATTTGGTTTCATGGGCGAGACCGTTATTTAAAGACCGTCTGAGATTTGCACAAATGGCAGATCCCATGCTTAGGGGCCAGTACCCATCAAGGGGGTTGTATCAGGCTCTTGCTATTGCAGCAATGTGTGTTCAAGATCAGCCAAATATGCGCCCTGTGATTGCGGATGTCGTTACAGCTCTATCTTATCTTGCTTCCCAAAGATATGACCCTACTACAGAAATACCCCACAGCTTCCTCGCATCTCCTTGTACACCTCCGAGAACCCACAGAGGTTCCGGTAAGAAGCTCAATGGTGGTAGAAGACACGATAGAAATCAAACTAGAAGACTATAA | 1197 | 42.11 | MNWIPCSGNSNRKEKSQKLKKLELLKNGVDQIKPNSMKINTNSSFNEGSKSEGSEHIKAQIFSFHELAAATRNFRADCLLGEGGFGRVYRGHLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKILDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKSSNILLDEGYRPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQDQPNMRPVIADVVTALSYLASQRYDPTTEIPHSFLASPCTPPRTHRGSGKKLNGGRRHDRNQTRRL | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2172097 | 2175256 | - | evm.model.ptg000018l.376 | HCH11g0239 | 553706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0239 | 398 | ProSiteProfiles | Protein kinase domain profile. | 74 | 367 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0239 | 398 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 150 | - | - | |
HCH11g0239 | 398 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 103 | IPR017441 | GO:0005524(InterPro) | |
HCH11g0239 | 398 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 197 | 209 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0239 | 398 | MobiDBLite | consensus disorder prediction | 362 | 398 | - | - | |
HCH11g0239 | 398 | FunFam | Serine/threonine-protein kinase PBS1 | 151 | 365 | - | - | |
HCH11g0239 | 398 | CDD | STKc_IRAK | 80 | 348 | - | - | |
HCH11g0239 | 398 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 363 | - | - | |
HCH11g0239 | 398 | FunFam | Serine/threonine-protein kinase PBS1 | 46 | 150 | - | - | |
HCH11g0239 | 398 | PANTHER | OS07G0668900 PROTEIN | 20 | 360 | - | - | |
HCH11g0239 | 398 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 346 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0239 | 398 | SMART | serkin_6 | 74 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0239 | 398 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 368 | IPR011009 | - | |
HCH11g0239 | 398 | MobiDBLite | consensus disorder prediction | 381 | 398 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0239 | HCH-Chr11:2172097 | HCH7g1120 | HCH-Chr7:43960087 | 5.80E-151 | dispersed | |
HCH1g0516 | HCH-Chr1:54013798 | HCH11g0239 | HCH-Chr11:2172097 | 2.00E-161 | wgd | |
HCH11g0239 | HCH-Chr11:2172097 | HCH2g1138 | HCH-Chr2:54046726 | 4.30E-130 | wgd | |
HCH11g0239 | HCH-Chr11:2172097 | HCH3g1290 | HCH-Chr3:49108702 | 9.00E-144 | wgd | |
HCH11g0239 | HCH-Chr11:2172097 | HCH6g0136 | HCH-Chr6:1842128 | 1.30E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81045 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-45 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0239 | - | - | - | 0.0 |