Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0239 ATGAATTGGATACCATGTTCTGGAAATTCAAATAGGAAGGAAAAATCACAGAAGTTGAAGAAATTGGAGTTGCTGAAGAATGGAGTTGATCAGATCAAACCCAATTCAATGAAAATAAATACGAATTCCTCCTTCAATGAGGGATCTAAAAGTGAAGGGTCTGAACATATCAAGGCACAGATTTTCTCATTCCATGAATTGGCAGCTGCTACCAGGAATTTTAGAGCTGACTGTCTTTTGGGAGAGGGCGGTTTTGGCAGAGTTTACCGAGGACATTTGGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTTGATCGCAATGGGTTGCAAGGAAACCGGGAGTTTTTAGTTGAAGTATTGATGTTAAGCCTACTTCATCACCAAAATCTTGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAGAGGCTTCTGATTTATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAATACTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCGGCCCGAGGATTGGAATATTTGCACGACAAAGCTAACCCTCCTGTTATTTATCGAGATTTAAAAAGTTCGAACATTCTGCTCGACGAAGGTTATCGTCCTAAGCTGTCGGATTTTGGATTAGCCAAACTTGGGCCTGTTGGGGACAATACACATGTATCTACCAGGGTCATGGGCACTTATGGATATTGTGCTCCAGAATATGCAATGACCGGTCAGTTAACTCTGAAGTCGGATGTTTATAGCTTCGGTGTTGTTCTTCTAGAAATAATAACAGGCAGGAAGGCAATTGATGATTCGAAAGCTGCAGGAGAGCAAAATTTGGTTTCATGGGCGAGACCGTTATTTAAAGACCGTCTGAGATTTGCACAAATGGCAGATCCCATGCTTAGGGGCCAGTACCCATCAAGGGGGTTGTATCAGGCTCTTGCTATTGCAGCAATGTGTGTTCAAGATCAGCCAAATATGCGCCCTGTGATTGCGGATGTCGTTACAGCTCTATCTTATCTTGCTTCCCAAAGATATGACCCTACTACAGAAATACCCCACAGCTTCCTCGCATCTCCTTGTACACCTCCGAGAACCCACAGAGGTTCCGGTAAGAAGCTCAATGGTGGTAGAAGACACGATAGAAATCAAACTAGAAGACTATAA 1197 42.11 MNWIPCSGNSNRKEKSQKLKKLELLKNGVDQIKPNSMKINTNSSFNEGSKSEGSEHIKAQIFSFHELAAATRNFRADCLLGEGGFGRVYRGHLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKILDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKSSNILLDEGYRPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQDQPNMRPVIADVVTALSYLASQRYDPTTEIPHSFLASPCTPPRTHRGSGKKLNGGRRHDRNQTRRL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2172097 2175256 - evm.model.ptg000018l.376 HCH11g0239 553706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0239 398 ProSiteProfiles Protein kinase domain profile. 74 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0239 398 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
HCH11g0239 398 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
HCH11g0239 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0239 398 MobiDBLite consensus disorder prediction 362 398 - -
HCH11g0239 398 FunFam Serine/threonine-protein kinase PBS1 151 365 - -
HCH11g0239 398 CDD STKc_IRAK 80 348 - -
HCH11g0239 398 Gene3D Transferase(Phosphotransferase) domain 1 151 363 - -
HCH11g0239 398 FunFam Serine/threonine-protein kinase PBS1 46 150 - -
HCH11g0239 398 PANTHER OS07G0668900 PROTEIN 20 360 - -
HCH11g0239 398 Pfam Protein tyrosine and serine/threonine kinase 78 346 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0239 398 SMART serkin_6 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0239 398 SUPERFAMILY Protein kinase-like (PK-like) 60 368 IPR011009 -
HCH11g0239 398 MobiDBLite consensus disorder prediction 381 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0239 HCH-Chr11:2172097 HCH7g1120 HCH-Chr7:43960087 5.80E-151 dispersed
HCH1g0516 HCH-Chr1:54013798 HCH11g0239 HCH-Chr11:2172097 2.00E-161 wgd
HCH11g0239 HCH-Chr11:2172097 HCH2g1138 HCH-Chr2:54046726 4.30E-130 wgd
HCH11g0239 HCH-Chr11:2172097 HCH3g1290 HCH-Chr3:49108702 9.00E-144 wgd
HCH11g0239 HCH-Chr11:2172097 HCH6g0136 HCH-Chr6:1842128 1.30E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81045 PF07714 PK_Tyr_Ser-Thr 2.90E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0239 - - - 0.0