Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0244 ATGTTGGATCTTAATTTAGACATTCTTTCCTCTGATTCCATATTTTCCGGGAAAACAATACCCTTTCCCGGAAACGGGATGGAAAGTACTGGAAGCTTCAACTCTTCCTCCGTCGTCAACGGCGATCCTTCCGTCAGCACCACCGGCGACGACGAAGACTCTTCTAACGCAGACGAGGAGACTACGATGCAACTTTTCCCGTTGACTGGTGGGTTCTCGGAATCAATGGTTAATCAGAATCCATGGCTTTCGACTGCGCCGGAACCGGAGAGGCAGCGGCCGGCGATAAAAAGGAACCGGCGAGGACCGAGGTCAAGAAGCTCACAGTATCGTGGGGTTACTTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGATTGCGGGAAACAAGTTTATCTTGGTGGGTTTGATACTGCCCATGCTGCTGCTAGGGCATATGATCGAGCAGCGATTAAGTTTCGTGGGATTGATGCAGATATCAATTTCAATGTCAATGATTACGATGAAGATATAAAGCAGATGAGTAATTTTTCAAAGGAAGAATTTGTGCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCAAAATATAGAGGAGTCACTTTGCATAAATGTGGGCGATGGGAAGCAAGGATGGGTCAATTTCTTGGCAAGAAGTACATTTATCTTGGTCTCTTTGATAGTGAGATAGAAGCTGCAAGAGCATATGATAAAGCTGCATTAAAATGCAATGGCAAGGAGGCTGTTACTAATTTTGAACCAAGTTCTTATATGGCAGAGATGACTTCTGAGGCTGATACAGGAGAAGACAACCAGATTCTTGACCTGAACTTGGGAATCGCTCCCCCGAATCTTTCCGATGCCCAAAGTGAGAGCATCGGCGTGGGGGGAAACGCGTTCCATCCCGGATGGCGTGATTTAATCGTTGATGGAAGAGCTACTATGCTTGAAAACTCGGTTTCAGCAGGAATTCGATCTCAGCCATACGGTTCTGCAGCGCCTTCGAATCACTATTCTTCTTGGAACATTTCGAATTCCAGTTTCTTTCCCATCTCAAGGGAAAGAGCAACAGAGATAAGAATGGAAGCAGATTCATTTCCAAATTGGGAATGGCAAATCCAAGGCCACACAGGTGGAGGAGGAGGAGCAAATTCAATGCCAATCTTCTCTGCTGCTGCAGCATCATCAGGATTCCCTACTTCAAATACCAACAATATTTCCCACTTCTATTGCAGGAGATGA 1257 45.51 MLDLNLDILSSDSIFSGKTIPFPGNGMESTGSFNSSSVVNGDPSVSTTGDDEDSSNADEETTMQLFPLTGGFSESMVNQNPWLSTAPEPERQRPAIKRNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVNDYDEDIKQMSNFSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALKCNGKEAVTNFEPSSYMAEMTSEADTGEDNQILDLNLGIAPPNLSDAQSESIGVGGNAFHPGWRDLIVDGRATMLENSVSAGIRSQPYGSAAPSNHYSSWNISNSSFFPISRERATEIRMEADSFPNWEWQIQGHTGGGGGANSMPIFSAAAASSGFPTSNTNNISHFYCRR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2206554 2209072 + evm.model.ptg000018l.371 HCH11g0244 553711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0244 418 MobiDBLite consensus disorder prediction 77 109 - -
HCH11g0244 418 Pfam AP2 domain 109 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 Pfam AP2 domain 200 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 CDD AP2 200 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 ProSiteProfiles AP2/ERF domain profile. 201 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 FunFam AP2-like ethylene-responsive transcription factor 108 167 - -
HCH11g0244 418 MobiDBLite consensus disorder prediction 26 51 - -
HCH11g0244 418 SMART rav1_2 201 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 SMART rav1_2 109 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 SUPERFAMILY DNA-binding domain 200 259 IPR016177 GO:0003677(InterPro)
HCH11g0244 418 MobiDBLite consensus disorder prediction 26 58 - -
HCH11g0244 418 CDD AP2 108 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 FunFam AP2-like ethylene-responsive transcription factor 200 260 - -
HCH11g0244 418 ProSiteProfiles AP2/ERF domain profile. 109 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677(InterPro)
HCH11g0244 418 PRINTS Ethylene responsive element binding protein signature 240 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 64 286 - -
HCH11g0244 418 Gene3D AP2/ERF domain 200 259 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0244 418 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0244 HCH-Chr11:2206554 HCH14g0298 HCH-Chr14:31567071 2.10E-87 dispersed
HCH1g0521 HCH-Chr1:54130940 HCH11g0244 HCH-Chr11:2206554 1.40E-74 wgd
HCH11g0244 HCH-Chr11:2206554 HCH2g1142 HCH-Chr2:54083671 8.40E-100 wgd
HCH11g0244 HCH-Chr11:2206554 HCH9g0608 HCH-Chr9:4070787 2.30E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32529 PF00847 AP2 7.20E-10 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0244 K09284 - csv:101211242 558.525