Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0244 | ATGTTGGATCTTAATTTAGACATTCTTTCCTCTGATTCCATATTTTCCGGGAAAACAATACCCTTTCCCGGAAACGGGATGGAAAGTACTGGAAGCTTCAACTCTTCCTCCGTCGTCAACGGCGATCCTTCCGTCAGCACCACCGGCGACGACGAAGACTCTTCTAACGCAGACGAGGAGACTACGATGCAACTTTTCCCGTTGACTGGTGGGTTCTCGGAATCAATGGTTAATCAGAATCCATGGCTTTCGACTGCGCCGGAACCGGAGAGGCAGCGGCCGGCGATAAAAAGGAACCGGCGAGGACCGAGGTCAAGAAGCTCACAGTATCGTGGGGTTACTTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGATTGCGGGAAACAAGTTTATCTTGGTGGGTTTGATACTGCCCATGCTGCTGCTAGGGCATATGATCGAGCAGCGATTAAGTTTCGTGGGATTGATGCAGATATCAATTTCAATGTCAATGATTACGATGAAGATATAAAGCAGATGAGTAATTTTTCAAAGGAAGAATTTGTGCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCAAAATATAGAGGAGTCACTTTGCATAAATGTGGGCGATGGGAAGCAAGGATGGGTCAATTTCTTGGCAAGAAGTACATTTATCTTGGTCTCTTTGATAGTGAGATAGAAGCTGCAAGAGCATATGATAAAGCTGCATTAAAATGCAATGGCAAGGAGGCTGTTACTAATTTTGAACCAAGTTCTTATATGGCAGAGATGACTTCTGAGGCTGATACAGGAGAAGACAACCAGATTCTTGACCTGAACTTGGGAATCGCTCCCCCGAATCTTTCCGATGCCCAAAGTGAGAGCATCGGCGTGGGGGGAAACGCGTTCCATCCCGGATGGCGTGATTTAATCGTTGATGGAAGAGCTACTATGCTTGAAAACTCGGTTTCAGCAGGAATTCGATCTCAGCCATACGGTTCTGCAGCGCCTTCGAATCACTATTCTTCTTGGAACATTTCGAATTCCAGTTTCTTTCCCATCTCAAGGGAAAGAGCAACAGAGATAAGAATGGAAGCAGATTCATTTCCAAATTGGGAATGGCAAATCCAAGGCCACACAGGTGGAGGAGGAGGAGCAAATTCAATGCCAATCTTCTCTGCTGCTGCAGCATCATCAGGATTCCCTACTTCAAATACCAACAATATTTCCCACTTCTATTGCAGGAGATGA | 1257 | 45.51 | MLDLNLDILSSDSIFSGKTIPFPGNGMESTGSFNSSSVVNGDPSVSTTGDDEDSSNADEETTMQLFPLTGGFSESMVNQNPWLSTAPEPERQRPAIKRNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVNDYDEDIKQMSNFSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALKCNGKEAVTNFEPSSYMAEMTSEADTGEDNQILDLNLGIAPPNLSDAQSESIGVGGNAFHPGWRDLIVDGRATMLENSVSAGIRSQPYGSAAPSNHYSSWNISNSSFFPISRERATEIRMEADSFPNWEWQIQGHTGGGGGANSMPIFSAAAASSGFPTSNTNNISHFYCRR | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2206554 | 2209072 | + | evm.model.ptg000018l.371 | HCH11g0244 | 553711 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0244 | 418 | MobiDBLite | consensus disorder prediction | 77 | 109 | - | - | |
HCH11g0244 | 418 | Pfam | AP2 domain | 109 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | Pfam | AP2 domain | 200 | 250 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | CDD | AP2 | 200 | 260 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | ProSiteProfiles | AP2/ERF domain profile. | 201 | 258 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | FunFam | AP2-like ethylene-responsive transcription factor | 108 | 167 | - | - | |
HCH11g0244 | 418 | MobiDBLite | consensus disorder prediction | 26 | 51 | - | - | |
HCH11g0244 | 418 | SMART | rav1_2 | 201 | 264 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | SMART | rav1_2 | 109 | 171 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | SUPERFAMILY | DNA-binding domain | 200 | 259 | IPR016177 | GO:0003677(InterPro) | |
HCH11g0244 | 418 | MobiDBLite | consensus disorder prediction | 26 | 58 | - | - | |
HCH11g0244 | 418 | CDD | AP2 | 108 | 167 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | FunFam | AP2-like ethylene-responsive transcription factor | 200 | 260 | - | - | |
HCH11g0244 | 418 | ProSiteProfiles | AP2/ERF domain profile. | 109 | 165 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | SUPERFAMILY | DNA-binding domain | 108 | 166 | IPR016177 | GO:0003677(InterPro) | |
HCH11g0244 | 418 | PRINTS | Ethylene responsive element binding protein signature | 240 | 260 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | PRINTS | Ethylene responsive element binding protein signature | 202 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 64 | 286 | - | - | |
HCH11g0244 | 418 | Gene3D | AP2/ERF domain | 200 | 259 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0244 | 418 | Gene3D | AP2/ERF domain | 108 | 167 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0244 | HCH-Chr11:2206554 | HCH14g0298 | HCH-Chr14:31567071 | 2.10E-87 | dispersed | |
HCH1g0521 | HCH-Chr1:54130940 | HCH11g0244 | HCH-Chr11:2206554 | 1.40E-74 | wgd | |
HCH11g0244 | HCH-Chr11:2206554 | HCH2g1142 | HCH-Chr2:54083671 | 8.40E-100 | wgd | |
HCH11g0244 | HCH-Chr11:2206554 | HCH9g0608 | HCH-Chr9:4070787 | 2.30E-118 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32529 | PF00847 | AP2 | 7.20E-10 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0244 | K09284 | - | csv:101211242 | 558.525 |