Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0245 ATGAAGTCTAATCTTTTTCTTTCCTTCATTTTCCTTCTTCTTCTTCTAGACTTCTCCTTTGCTCAGATTCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACGGATGATATTGGCCTGGAGTGGGTTCCGGATACTCAAATTCGTTATGGAGAGACGGTTAACATTTCTGTTGCGAACGAGACTCGGAAGCAGTACATGGCATTGAGACACTTTCCTGCTGATTCCAGGAAGTATTGTTACACATTTAATGTCACTAGTAGGACGCGGTACCTTATCAGAGCATCGTTTTTATATGGTAACTTTGACAACAACAATGTTTATCCGAAATTTGATATTTCCCTGGGGGCAACTCATTGGTCAACAATTGTCATATCTGATGCCAAGACTATAGAGGTTCGAGAGCTCATATTTTTGGCTTCGAGTCCTACTGTGAGTGTCTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCTACACTCGAGCTTCGACAATTCAATGGCTCAGTTTACTATACAGATTTCGAGGATCAGTTTTACCTCAGTGTCTCTGCGAGGATAAATTTTGGGGCGGAATCTGAAGCTCCAATAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCAGACTCTGTGAGGAAAGCGAATTACCTTGTTGATGTTGCTGCTGGCACTGAAAAAATTTCCACTAAAATTCCAATAGATGTAGGCAGAGATGAAAGACCACCGGAGAAAGTTATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAACTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTCGCAGAAATTGAAGATTTGGGTCCAACTGATACAAGAAAATTCAGGCTAGTACTTCCTGGCCAGCCTGAAATCAGCAAAGCTGTTGTTAACATTGAAGAAAATGCTCAAGGAAAATACCGGCTTTATGAGCCTGGGTTTACTAACTTAACCTTCCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCAGATTCTTCCATGGGACCTCTTTTAAATGCGATGGAGATTAACAAGTATCTTGAGAAAAATGATGGTTCTCTTGATGGAGCAGTTATTGCTAGTGTCATTTCAAAATTCTCATCTTTAGATTGGGATGAAGGCGGTGATCCATGCATTCCAGTTCCTTGGTCATGGTTGCAATGTAACTCAGATCCACGGCCAAGAATAGTTAAAATTTTATTGTCTGGGAAGAATTTGACTGGAAGTATCCCCACAGACCTTGCGAAGTTGAATGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTCGTCGGTCCTATACCTGATTTTTCTGGATGTGTGGACTTGAAAATCCTTCATCTTGAGAACAATCAGTTGACAGGAGAGCTGTCTTCCTCTTTTGCAAAACTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCATTCGGAACTTCTCAATAAAAACTTAGTTTTGGACTACTCTGGAAACATAAATCTTCATGAAGGTAGGAAAAAGAGAAGCCAAGTTTATATTATTGTGGGTTCAGTAATTGGTTCTGCTGTCCTTCTGTTGGCTACTATAGTATCTTGCTGCTATCTACAAAGAGAGAAGAAAAAATATCCTAAACAAGGTCTACTTGCAGAATCCCTGGAAGTACAAAGATTTGCCTCTGCAAAGGGTGACACTCCCAAGGAAACAGCACATTGTTTCAGTTATGATGAAATTGAACATGCGACAAGAAAGTTTGAAAGAAAAATTGGCTCTGGAGGTTTTGGGGTTGTATACTATGGGAAACTGAATGATGGAAGAGAAATTGCTGTTAAAGTTTTGAATAATAACTCCGGCCAGGGAAAGCGTGAATTTTCTAATGAGGTGACTCTCCTTTCAAGGATTCATCACAGAAACCTTTTACAATTTCTTGGATATTGTCTAGAGGGAGACCGTAGTAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAGGAACACCTTTATGGCCCATTAACACGTGAAAGAGGTATCAATTGGATCAAGCGCCTTGAAATTGCTGAAGATGCCGCTAAAGGGATTGAATACCTTCATACAGGCTGTGTACCAGCCATCATTCATAGGGACTTAAAAAGCAGCAACATTCTTCTTGACAAACACATGAAAGCAAAGGTTTCAGATTTTGGTCTTTCAAAGATTGCAGTGGATGGCGCCTCCCATGTATCAAGTATGGTTCGGGGAACTGTTGGATATTTGGATCCAGAGTATTATATCTCTCAGCAGTTGACTGATAAGAGCGATGTTTATAGCTTTGGGGTTATTCTTCTTGAGTTGATATCTGGGCAAGGACCGATATCTGATCAAAACTTTGGTGTCAATTGTCGCAACATCGTCCAGTGGGCAAAGTCACATATTGATAGCGGCGATATTCAAGGGATCATTGATCCGTCGCTACACAATGAATATGAGCTTCAATCGATGTGGAAAATCGCAGAGAAAGCGTTGATGTGCGTCCAGCCTCATGCATACATGAGACCATCCATTTCTGAAGTGCTTAAGGAGATACATGATTCAATTTTGATCGTAAGGGAAGCTACTGCAGCTAGAGAAGGTAGCTCTGATGAATTGTCAAGGAATTCAGTCCATTCTATGAATACAGGATCCCTTGATTTATGTGGAAACGAAAACTATGTGTCGTTCGATGAATCCATCGCACGGCCTACTGCACGGTAG 2775 40.83 MKSNLFLSFIFLLLLLDFSFAQIPGFVSLDCGGQESFTDDIGLEWVPDTQIRYGETVNISVANETRKQYMALRHFPADSRKYCYTFNVTSRTRYLIRASFLYGNFDNNNVYPKFDISLGATHWSTIVISDAKTIEVRELIFLASSPTVSVCLSNATTGQPFISTLELRQFNGSVYYTDFEDQFYLSVSARINFGAESEAPIRYPDDPFDRIWESDSVRKANYLVDVAAGTEKISTKIPIDVGRDERPPEKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGQPEISKAVVNIEENAQGKYRLYEPGFTNLTFPFVLSFRFGKTSDSSMGPLLNAMEINKYLEKNDGSLDGAVIASVISKFSSLDWDEGGDPCIPVPWSWLQCNSDPRPRIVKILLSGKNLTGSIPTDLAKLNGLVELWLDGNSFVGPIPDFSGCVDLKILHLENNQLTGELSSSFAKLPNLRELYVQNNMLSGTVHSELLNKNLVLDYSGNINLHEGRKKRSQVYIIVGSVIGSAVLLLATIVSCCYLQREKKKYPKQGLLAESLEVQRFASAKGDTPKETAHCFSYDEIEHATRKFERKIGSGGFGVVYYGKLNDGREIAVKVLNNNSGQGKREFSNEVTLLSRIHHRNLLQFLGYCLEGDRSSMLVYEFMHNGTLKEHLYGPLTRERGINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMKAKVSDFGLSKIAVDGASHVSSMVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQGPISDQNFGVNCRNIVQWAKSHIDSGDIQGIIDPSLHNEYELQSMWKIAEKALMCVQPHAYMRPSISEVLKEIHDSILIVREATAAREGSSDELSRNSVHSMNTGSLDLCGNENYVSFDESIARPTAR 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2218111 2224088 + evm.model.ptg000018l.370 HCH11g0245 553712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0245 924 Gene3D Phosphorylase Kinase; domain 1 578 672 - -
HCH11g0245 924 SUPERFAMILY L domain-like 395 512 - -
HCH11g0245 924 SUPERFAMILY Protein kinase-like (PK-like) 582 867 IPR011009 -
HCH11g0245 924 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524(InterPro)
HCH11g0245 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0245 924 PANTHER OS07G0107800 PROTEIN-RELATED 454 876 - -
HCH11g0245 924 CDD STKc_IRAK 602 869 - -
HCH11g0245 924 SMART serkin_6 596 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0245 924 Pfam Protein tyrosine and serine/threonine kinase 597 867 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0245 924 Gene3D Ribonuclease Inhibitor 372 523 IPR032675 -
HCH11g0245 924 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 673 882 - -
HCH11g0245 924 ProSiteProfiles Protein kinase domain profile. 596 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0245 924 FunFam Leucine-rich repeat receptor-like protein kinase 573 672 - -
HCH11g0245 924 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 408 496 - -
HCH11g0245 924 Pfam Leucine Rich Repeat 458 479 IPR001611 GO:0005515(InterPro)
HCH11g0245 924 Gene3D Transferase(Phosphotransferase) domain 1 673 885 - -
HCH11g0245 924 Pfam Malectin-like domain 29 359 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0245 HCH-Chr11:2218111 HCH4g1453 HCH-Chr4:10793285 8.80E-118 dispersed
HCH1g1112 HCH-Chr1:58734409 HCH11g0245 HCH-Chr11:2218111 3.00E-235 transposed
HCH11g0245 HCH-Chr11:2218111 HCH6g0130 HCH-Chr6:1605133 6.80E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81046 PF12819 Malectin_like 1.40E-77 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0245 - - - 0.0