Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0246 | ATGGCGGAAGCTCCGGCGAGTCCCGGCGGAGGAAGCCACGAGAGCGGCGAGCAAAGTCCGCGTTCCAATGTTCGTGAACAAGACCGGTTTTTACCGATTGCGAATATTAGTCGGATTATGAAGAAAGCTCTTCCTGCTAATGGAAAAATTGCTAAGGATGCTAAAGAAACTGTTCAAGAATGCGTTTCTGAGTTTATAAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAAAGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCTACTCTTGGATTTGAGGATTATATTGATCCCCTGAAAACTTACTTGACCAGATATAGAGAGACAGAGGGTGATACTAAGGGATCTGCAAAAGGTGGGGACACGAATGTCAAGAAAGAAGCTCATCCAACAACTCCTAGTCCTAAGATTGCCCAGCCAGGCTCGTTTTCCCAAGGAGTTAACTATGCAAGTTCTCAATCTCAGGCCCAGCATCTGATGGTTCCTATGCAAGGCACCGATTAG | 525 | 44.95 | MAEAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTRYRETEGDTKGSAKGGDTNVKKEAHPTTPSPKIAQPGSFSQGVNYASSQSQAQHLMVPMQGTD | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2228074 | 2230790 | + | evm.model.ptg000018l.369 | HCH11g0246 | 553713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0246 | 174 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
HCH11g0246 | 174 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH11g0246 | 174 | Gene3D | Histone, subunit A | 17 | 152 | IPR009072 | GO:0046982(InterPro) | |
HCH11g0246 | 174 | MobiDBLite | consensus disorder prediction | 142 | 174 | - | - | |
HCH11g0246 | 174 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
HCH11g0246 | 174 | MobiDBLite | consensus disorder prediction | 116 | 132 | - | - | |
HCH11g0246 | 174 | MobiDBLite | consensus disorder prediction | 116 | 174 | - | - | |
HCH11g0246 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
HCH11g0246 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
HCH11g0246 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
HCH11g0246 | 174 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 14 | 155 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
HCH11g0246 | 174 | FunFam | Nuclear transcription factor Y subunit B-3 | 19 | 142 | - | - | |
HCH11g0246 | 174 | SUPERFAMILY | Histone-fold | 27 | 130 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0246 | HCH-Chr11:2228074 | HCH2g0653 | HCH-Chr2:50302037 | 8.40E-46 | dispersed | |
HCH1g0524 | HCH-Chr1:54154334 | HCH11g0246 | HCH-Chr11:2228074 | 6.30E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32530 | PF00808 | CBFD_NFYB_HMF | 7.90E-28 | CL0012 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0246 | K08065 | - | csv:101212699 | 318.161 |