Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0246 ATGGCGGAAGCTCCGGCGAGTCCCGGCGGAGGAAGCCACGAGAGCGGCGAGCAAAGTCCGCGTTCCAATGTTCGTGAACAAGACCGGTTTTTACCGATTGCGAATATTAGTCGGATTATGAAGAAAGCTCTTCCTGCTAATGGAAAAATTGCTAAGGATGCTAAAGAAACTGTTCAAGAATGCGTTTCTGAGTTTATAAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAAAGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCTACTCTTGGATTTGAGGATTATATTGATCCCCTGAAAACTTACTTGACCAGATATAGAGAGACAGAGGGTGATACTAAGGGATCTGCAAAAGGTGGGGACACGAATGTCAAGAAAGAAGCTCATCCAACAACTCCTAGTCCTAAGATTGCCCAGCCAGGCTCGTTTTCCCAAGGAGTTAACTATGCAAGTTCTCAATCTCAGGCCCAGCATCTGATGGTTCCTATGCAAGGCACCGATTAG 525 44.95 MAEAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTRYRETEGDTKGSAKGGDTNVKKEAHPTTPSPKIAQPGSFSQGVNYASSQSQAQHLMVPMQGTD 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2228074 2230790 + evm.model.ptg000018l.369 HCH11g0246 553713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0246 174 MobiDBLite consensus disorder prediction 1 28 - -
HCH11g0246 174 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0246 174 Gene3D Histone, subunit A 17 152 IPR009072 GO:0046982(InterPro)
HCH11g0246 174 MobiDBLite consensus disorder prediction 142 174 - -
HCH11g0246 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
HCH11g0246 174 MobiDBLite consensus disorder prediction 116 132 - -
HCH11g0246 174 MobiDBLite consensus disorder prediction 116 174 - -
HCH11g0246 174 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
HCH11g0246 174 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
HCH11g0246 174 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
HCH11g0246 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 155 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH11g0246 174 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
HCH11g0246 174 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0246 HCH-Chr11:2228074 HCH2g0653 HCH-Chr2:50302037 8.40E-46 dispersed
HCH1g0524 HCH-Chr1:54154334 HCH11g0246 HCH-Chr11:2228074 6.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32530 PF00808 CBFD_NFYB_HMF 7.90E-28 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0246 K08065 - csv:101212699 318.161