Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0249 ATGGAGCAAGCTTTCGCAGACGTTAATGTATCTGAAAATATATTGGATTTTTATTTTCCTCAATCCGTCTTTACCTTCGAAAATGAATGGCTCAAGCTAATTTCTCACCTCATTTTCTTCTTTTCGTCTCCTTCAGGTCAACATTTAGCTTCACAGGCTACTGATGATGGTCATGGTATCTTTATTTTATTAATCGACTTTCAACAGTTCCAGAAGGTCTGTGATCTTCATGAATTTTATGAAATGTTAGAAGACAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCATCAGGTGATGGGGACCAAATGGGATCACAAGTTGGAGCATTCTGCGAAAATTCTCATCCGGCTGCACAACTATCCAGAATCTATGATTGCTTTGAAAAACTTAAAAGCAGCCTACATTGACAAGCTTGCATCGGTGCGTGGTACAGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAACTTTGATTGTGCAAAGTGCAAAAGCACCATTACACGCATCTTCCCCGATGGAAAGTTTTTGCCACCATCATTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCAATTCGATCTACTGCTCAAGCAATAGACTTTCAGAAAATAAGGTTACAAGAACTTAATAAACCTGATGACCATGAAGAAGGCAGGGTACCTCGAACCGTTGAATGTGAACTTACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTGACTGTTACTGGAATTATACGAGTAATTAATAATTATATGGATATTGGAGGAGGTAAATCAAAGAGTAAAAGTCAAGGATTCTACTATTTGTATCTGGAAGCCGTTTCAATAAAAAATACCAAGTCACAATCTACACCTGAGGACTCGCAAGATTCTAATTCTAATGCTAGAGTAACCGAGCTACTTGATTTATTTTCATTCTCTCCAAGAGATTTGGAATTTATTGTCAAATTCTCAGGGGAATATGGTTCAGATATATTCCGTCAAGTACTTCAGTCTATATGTCCATCCATTTACGGACATGAACTTGTTAAAGGTAACATTGTGTACAAATTCAACACCACCCCTTGTCTCCAAGTTTTTTGGCTAATTATATTTTATCGATCAACTTTTATCTCAAAAGCGGGAATAACACTAGCACTGTTTGGTGGTGTAAGAAAGCATTCGAAAGACCAGAATAAAGTGCCTGTCAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTAGGTAAAAGTCAATTACTGCAAGCTGCTGCAGTTGTATCTCCACGTGGCATTTATGTGTGTGGTAATGCAACAACCAAGGCGGGCTTAACTGTAGCTGTTGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTACTTGCGGATGGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTTTATCAGCACGCACTTCTGTCTTAGCAGCTGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCTCCTCTCCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAGCTTCTGGATAAGAAACTCTCGGAGCACATCATGTCGCTTCATAATGGATATGGGGAACAACTCCCTGCAGCAAAAAGACTGCGTAAAGATGTGTCTCCTATTGCCTTACAAAATGCAGCACCGGGGAATGTTGGAAGTTCAGATGCTAGTTCAAGAGGTGCTTCTTTAGTTTCAAGGCTGAGATTGGACCGAATTAACGATGCTAATTTCGTACCGTTACCAGGCCAACTTCTTCGCAAGTATATAGCCTATGCAAGAACTTTTGTCTTCCCTAGGATGACAAAGCCAGCGGCAGATATCTTGCAGAAATTTTACTTGCGACTGAGAGATCGAAATACATCAGCGGATGGTACACCAATAACAGCAAGGCAACTGGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTGGACCTTAGAGAAGAAGTTACAGTTCAAGATGCCATGGATGTGGTTGAAATAATGAAGGAATCCCTTTACGACAAGTTCGTTGATGAACATGGGGTCTTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAAGCCAAGCGGTTTCTGAGTGCACTCAACAAGCAATCAGAGTTGCAGCAGAAAGATTGTTTCTCAATATCAGAAATATACAACTTAGCCGATAGGATTGGTCTACGAGTACCTGATATCGACACCTTCATAGAAAATCTTAACAGTGTTGGTTATTTGCTTAAGAAGGGGCCGAAGACATACCAGGTTTTGTCATCATCTTATACCAGTCAATCATCAAGATCAAGGGGTTAG 2469 40.99 MEQAFADVNVSENILDFYFPQSVFTFENEWLKLISHLIFFFSSPSGQHLASQATDDGHGIFILLIDFQQFQKVCDLHEFYEMLEDNPKVALKCMSAALHQVMGTKWDHKLEHSAKILIRLHNYPESMIALKNLKAAYIDKLASVRGTVVKVSTVKPLVVQMNFDCAKCKSTITRIFPDGKFLPPSFCELDGCKSKTFNPIRSTAQAIDFQKIRLQELNKPDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLYLEAVSIKNTKSQSTPEDSQDSNSNARVTELLDLFSFSPRDLEFIVKFSGEYGSDIFRQVLQSICPSIYGHELVKGNIVYKFNTTPCLQVFWLIIFYRSTFISKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAVVSPRGIYVCGNATTKAGLTVAVVKDSMTSDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAPLLSRFDLVFILLDKPDELLDKKLSEHIMSLHNGYGEQLPAAKRLRKDVSPIALQNAAPGNVGSSDASSRGASLVSRLRLDRINDANFVPLPGQLLRKYIAYARTFVFPRMTKPAADILQKFYLRLRDRNTSADGTPITARQLESLVRLAEARARVDLREEVTVQDAMDVVEIMKESLYDKFVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYNLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSSRSRG 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2249990 2256220 - evm.model.ptg000018l.366 HCH11g0249 553716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0249 822 CDD MCM8_WHD 744 809 - -
HCH11g0249 822 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
HCH11g0249 822 Pfam MCM AAA-lid domain 639 722 IPR041562 -
HCH11g0249 822 Pfam MCM OB domain 130 259 IPR033762 -
HCH11g0249 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 729 IPR027417 -
HCH11g0249 822 Gene3D - 313 728 IPR027417 -
HCH11g0249 822 CDD MCM8 340 721 - -
HCH11g0249 822 SMART AAA_5 409 561 IPR003593 GO:0016887(InterPro)
HCH11g0249 822 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 56 807 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
HCH11g0249 822 FunFam DNA helicase MCM8 isoform X1 157 208 - -
HCH11g0249 822 Gene3D - 130 260 IPR012340 -
HCH11g0249 822 Pfam MCM P-loop domain 384 576 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 Coils Coil 480 500 - -
HCH11g0249 822 PRINTS Mini-chromosome maintenance (MCM) protein family signature 495 508 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 PRINTS Mini-chromosome maintenance (MCM) protein family signature 468 482 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 PRINTS Mini-chromosome maintenance (MCM) protein family signature 546 554 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 PRINTS Mini-chromosome maintenance (MCM) protein family signature 408 423 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 PRINTS Mini-chromosome maintenance (MCM) protein family signature 519 531 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 Gene3D - 157 207 - -
HCH11g0249 822 ProSiteProfiles MCM family domain profile. 384 572 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH11g0249 822 SMART mcm 126 723 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0249 HCH-Chr11:2249990 HCH7g0533 HCH-Chr7:4090494 5.00E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0249 K10737 - csv:101211972 1328.54