Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0270 ATGGTGACCGGAAAGCTCTACGGCGTCGCATTTCTTCTTCTATTGCAACTCTTCTATTTGGGAAGGAGTGAATTGCAGTTAAATTACTATGGGAAAAGCTGCCCAAAGGCTGAAGAAATTATAAAGAAGCAAGTTATTGATCTCTATTATGAACATGGAAACACTGCCGTTTCATGGCTTAGAAACCTTTTCCATGATTGCATTGTCCAGGGTTGCGATGCGTCTTTTCTATTGGACACTTACAAGGGAATAGAATCAGAGAAAGTATCAGTAAGAAGTTTTGGAATGAGAAATTTCAAGTACGTAAATACAATCAAATCAGCTGTTGAAAAGGAATGCCCCCTCACTGTTTCCTGTGCTGATATCGTTGCCCTCTCTGCCAGAGAGGGCATCGTCATGTTAAAAGGACCGTACGTAGAAATCAAAACTGGGAGAAAAGACAGCAAAGAAAGCTACTTAAAATTAGTTGATCAATTCATTATCAATCACAATGATTCCATTGACAATGCTCTCTCCCGCTTTCAATCCATCGGCATTAATACTGAAGGAGCCGTTGCTCTTTTAGGTTCTCACTCCGTTGGTCGAGTACATTGCGTCAATTTGGTAGAACGACTTTATTCTACGGTTGATCCAACCCTCGATCCCGAATATGCCAAATACTTGAAGGGTCGCTGCCCGACCCCGAACCCCGACCCGAATGCAGTGTTGTACTCGAGGAACGATCGCGAGACACCGATGATTCTCGATAACATGTACTACAAAAATATACTAGGAAACAAGGGTTTGCTCTCCGTGGACCAACAATTGGTTTCCAACCCTTCAACTCTTCCTTATGTCAAGAAATTTGCTGCTGATAATGCATATTTCCATGCCCAATTCTCTAGAGCTATTCTTTTGCTATCAGAGAACAATCCACTCACTGGAGTTGAAGGGGAGATCAGAAAAGATTGTCGTTTTGTTAACAAGTGA 969 41.9 MVTGKLYGVAFLLLLQLFYLGRSELQLNYYGKSCPKAEEIIKKQVIDLYYEHGNTAVSWLRNLFHDCIVQGCDASFLLDTYKGIESEKVSVRSFGMRNFKYVNTIKSAVEKECPLTVSCADIVALSAREGIVMLKGPYVEIKTGRKDSKESYLKLVDQFIINHNDSIDNALSRFQSIGINTEGAVALLGSHSVGRVHCVNLVERLYSTVDPTLDPEYAKYLKGRCPTPNPDPNAVLYSRNDRETPMILDNMYYKNILGNKGLLSVDQQLVSNPSTLPYVKKFAADNAYFHAQFSRAILLLSENNPLTGVEGEIRKDCRFVNK 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2451724 2455112 - evm.model.ptg000018l.345 HCH11g0270 553737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0270 322 SUPERFAMILY Heme-dependent peroxidases 25 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 FunFam Peroxidase 28 172 - -
HCH11g0270 322 FunFam Peroxidase 161 300 - -
HCH11g0270 322 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 Gene3D Peroxidase, domain 2 161 300 - -
HCH11g0270 322 ProSiteProfiles Plant heme peroxidase family profile. 24 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 CDD secretory_peroxidase 24 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH11g0270 322 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 PANTHER - 13 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH11g0270 322 Gene3D - 28 321 - -
HCH11g0270 322 Pfam Peroxidase 42 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0270 HCH-Chr11:2451724 HCH3g0537 HCH-Chr3:3544201 2.00E-101 dispersed
HCH11g0270 HCH-Chr11:2451724 HCH9g0600 HCH-Chr9:4028422 1.70E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0270 K00430 - csv:101215428 514.612