Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0272 ATGAGCGTAATTGACCTTTTGACCAGAGTAGACGCGATCTGCCAAAAATACGACAAATACGACGTTGAAAAGCAGCGAGATCTCAATATCTCCGGCGACGATGCCTTCGCTCGTCTATTTGCCTCCGTCGAAGCTGATATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGAGCATCTGCTGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCCCGATTGCTGGAGGAGGTTCCCAAATTGCAGAGATTGGCTGTGAAGAGGGTAAAAGGACTGTCAACAGAAGATCTTACTACTCGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGTACAGTTACTGAAACCAAAAAGAATGGGGGTTGGAATTCATCAGCTTCACGCACTGAAATAAGATTTGACTCAGATGGACGGTTTGATAATGAATACTTTCAACATACTGAGGAGTCAAGTCAGTTCAAGCAAGAGTATGAAATGCGGAAAATAAAACAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAACATGGCCAGTGATATGAATGAGGAAGTAGACAGGCAAGTTCCTTTGATGGATGAGATCGACACTAAGGTGGACAAGGCTGCATCTGACCTCAAGAATACCAATGTTAGATTAAAGCACACAGTTAATCAGCTAAGGTCCAGTAGGAATTTCTGTATTGATATTGTGTTGCTGTGTATAATCTTGGGTATTGCTGCCTATTTGTACAATGTTTTGAAGAAGTGA 798 42.98 MSVIDLLTRVDAICQKYDKYDVEKQRDLNISGDDAFARLFASVEADIEAALQKAEDASKEKNRASAVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTVTETKKNGGWNSSASRTEIRFDSDGRFDNEYFQHTEESSQFKQEYEMRKIKQDQGLDMISEGLDTLKNMASDMNEEVDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2469918 2472811 + evm.model.ptg000018l.343 HCH11g0272 553739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0272 265 SMART tSNARE_6 165 232 IPR000727 -
HCH11g0272 265 Coils Coil 40 67 - -
HCH11g0272 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH11g0272 265 Gene3D - 170 231 - -
HCH11g0272 265 Pfam SNARE domain 207 256 IPR000727 -
HCH11g0272 265 SUPERFAMILY SNARE fusion complex 164 230 - -
HCH11g0272 265 FunFam Putative syntaxin-71-like 170 231 - -
HCH11g0272 265 PANTHER SYNTAXIN 43 250 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH11g0272 265 CDD SNARE_Qc 175 231 - -
HCH11g0272 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0272 HCH-Chr11:2469918 HCH7g0806 HCH-Chr7:15192340 2.90E-13 dispersed
HCH11g0272 HCH-Chr11:2469918 HCH2g1168 HCH-Chr2:54247173 1.50E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0272 K08506 - csv:101215905 491.115