Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0272 | ATGAGCGTAATTGACCTTTTGACCAGAGTAGACGCGATCTGCCAAAAATACGACAAATACGACGTTGAAAAGCAGCGAGATCTCAATATCTCCGGCGACGATGCCTTCGCTCGTCTATTTGCCTCCGTCGAAGCTGATATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGAGCATCTGCTGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCCCGATTGCTGGAGGAGGTTCCCAAATTGCAGAGATTGGCTGTGAAGAGGGTAAAAGGACTGTCAACAGAAGATCTTACTACTCGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGTACAGTTACTGAAACCAAAAAGAATGGGGGTTGGAATTCATCAGCTTCACGCACTGAAATAAGATTTGACTCAGATGGACGGTTTGATAATGAATACTTTCAACATACTGAGGAGTCAAGTCAGTTCAAGCAAGAGTATGAAATGCGGAAAATAAAACAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAACATGGCCAGTGATATGAATGAGGAAGTAGACAGGCAAGTTCCTTTGATGGATGAGATCGACACTAAGGTGGACAAGGCTGCATCTGACCTCAAGAATACCAATGTTAGATTAAAGCACACAGTTAATCAGCTAAGGTCCAGTAGGAATTTCTGTATTGATATTGTGTTGCTGTGTATAATCTTGGGTATTGCTGCCTATTTGTACAATGTTTTGAAGAAGTGA | 798 | 42.98 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNISGDDAFARLFASVEADIEAALQKAEDASKEKNRASAVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTVTETKKNGGWNSSASRTEIRFDSDGRFDNEYFQHTEESSQFKQEYEMRKIKQDQGLDMISEGLDTLKNMASDMNEEVDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2469918 | 2472811 | + | evm.model.ptg000018l.343 | HCH11g0272 | 553739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0272 | 265 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
HCH11g0272 | 265 | Coils | Coil | 40 | 67 | - | - | |
HCH11g0272 | 265 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
HCH11g0272 | 265 | Gene3D | - | 170 | 231 | - | - | |
HCH11g0272 | 265 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
HCH11g0272 | 265 | SUPERFAMILY | SNARE fusion complex | 164 | 230 | - | - | |
HCH11g0272 | 265 | FunFam | Putative syntaxin-71-like | 170 | 231 | - | - | |
HCH11g0272 | 265 | PANTHER | SYNTAXIN | 43 | 250 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
HCH11g0272 | 265 | CDD | SNARE_Qc | 175 | 231 | - | - | |
HCH11g0272 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0272 | HCH-Chr11:2469918 | HCH7g0806 | HCH-Chr7:15192340 | 2.90E-13 | dispersed | |
HCH11g0272 | HCH-Chr11:2469918 | HCH2g1168 | HCH-Chr2:54247173 | 1.50E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0272 | K08506 | - | csv:101215905 | 491.115 |