Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0273 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCAACCGGTGGCGGCTTCTCTCAACAACAACAAGATGCAAACCCTAACCCAAACCCGAACCCGAAACCGGCCGCCTTGGCTAAGAAGAAGAGAAACCTCCCTGGATGCCCAGATCCGGATGCTGAGGTTATTGCTTTATCGCCGAAATCTCTCATGGCGACGAACCGATTCATCTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAAAACCTACAACTTCATAGGCGAGGGCATAACCTTCCATGGAAGCTCAGGCAGAGGACTAACAAGGAACCAATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACTTGCGTCCACCACGATCCATCACGAGCTCTCGGTGACCTCACCGGCATAAAGAAGCATTTCAGCCGGAAACATGGGGAGAAGAAGTGGAAATGCGAGAAGTGTTCGAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGACCTGTGGGACGAGAGAATACAAGTGTGACTGTGGAACCCTATTTTCTAGGAAAGACAGCTTCATCACCCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATTACTTCAGTTTCAGCCACAAATATTCTCAACAATCTTAGAAACGATTCAGTTCTTCTTCATCATCATCCTCAGCAATCTCTCATCGATTCTCAACCTCTAGGAGATGTTTCTGGACTTTCCCAATTTAGCCATGCAAATTTCTTGAGAGATTTCAATGAGAATAATCTCGAAGAAAAGAATCGATCTCCATTGTCGCTCTGGTTAAACCAAGCTCAAGCTCAGCTTAATCCTCTTGAAACGGCAATTAATAACAACAATATCCCGAACTTCTTCTCTTCTTCTTCCTCCAATCTTTTCGGCTCGTTCAACGAATCCGGGGTTTCGATTTTACCGGTTATTAATGAAAAGGATGATCAGATTGAGAATGTTAAAGGAAATGGATCAAAATTAGCTACAGCTTCACTGCCACTTCCTTCATCATCATCTTCTTCTTCATTATTACCTTCTTCTTCTCCCATGTCAGCTACTGCCCTTTTACAGAAAGCTAATCTAATGGGTTCCACAAGAAGCAATAACAATAATACTCCGATGTTCAGTACCGGAACTTTCGGATTAATGAACTCTTCGTCTTCGTCTTCATCGTCTTCGTCTTCAATGAGCTTGAATTCTCTGAACAGAACCAAAAGTTTAACAATGCCGGATTCAATGCAACTAGGTGGAAACTCAGATTTAAGCTCAAATTGTCTCAGTCAACTATTTCTACCAGGGAAACAAAGTGAAATGGCACCGCCATCGAAGCTTCATCAAGATGTTATTAATGGAATGAGAAATAGTAATCAAACCAGAGACTTCCTCGGCATGGGAGGAGGGGGAGAAGGACATCGGCCGCCGTATTTACCGCCGCAGCTTGCAAAGTTTGGTTCCATAAACTCAGCGATGGGTTTAAGCCAATTCGCTGCCAATCACTGA 1515 43.5 MSSNPFSLLSSTGGGFSQQQQDANPNPNPNPKPAALAKKKRNLPGCPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVSATNILNNLRNDSVLLHHHPQQSLIDSQPLGDVSGLSQFSHANFLRDFNENNLEEKNRSPLSLWLNQAQAQLNPLETAINNNNIPNFFSSSSSNLFGSFNESGVSILPVINEKDDQIENVKGNGSKLATASLPLPSSSSSSSLLPSSSPMSATALLQKANLMGSTRSNNNNTPMFSTGTFGLMNSSSSSSSSSSSMSLNSLNRTKSLTMPDSMQLGGNSDLSSNCLSQLFLPGKQSEMAPPSKLHQDVINGMRNSNQTRDFLGMGGGGEGHRPPYLPPQLAKFGSINSAMGLSQFAANH 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2485642 2487678 + evm.model.ptg000018l.342 HCH11g0273 553740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0273 504 Gene3D Classic Zinc Finger 48 118 - -
HCH11g0273 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
HCH11g0273 504 SMART c2h2final6 109 139 IPR013087 -
HCH11g0273 504 SMART c2h2final6 144 164 IPR013087 -
HCH11g0273 504 SMART c2h2final6 67 89 IPR013087 -
HCH11g0273 504 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
HCH11g0273 504 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
HCH11g0273 504 FunFam protein indeterminate-domain 12-like 46 115 - -
HCH11g0273 504 Gene3D Classic Zinc Finger 119 201 - -
HCH11g0273 504 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
HCH11g0273 504 MobiDBLite consensus disorder prediction 368 405 - -
HCH11g0273 504 MobiDBLite consensus disorder prediction 1 25 - -
HCH11g0273 504 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
HCH11g0273 504 MobiDBLite consensus disorder prediction 1 44 - -
HCH11g0273 504 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
HCH11g0273 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 473 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH11g0273 504 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
HCH11g0273 504 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 208 - -
HCH11g0273 504 MobiDBLite consensus disorder prediction 334 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0273 HCH-Chr11:2485642 HCH14g0555 HCH-Chr14:34492430 8.90E-88 dispersed
HCH1g0131 HCH-Chr1:9617379 HCH11g0273 HCH-Chr11:2485642 6.00E-86 transposed
HCH3g0229 HCH-Chr3:1474563 HCH11g0273 HCH-Chr11:2485642 2.20E-60 transposed
HCH11g0273 HCH-Chr11:2485642 HCH3g1260 HCH-Chr3:47541140 2.20E-94 wgd
HCH11g0273 HCH-Chr11:2485642 HCH6g0106 HCH-Chr6:1325702 7.70E-92 wgd
HCH11g0273 HCH-Chr11:2485642 HCH9g0599 HCH-Chr9:4017327 1.70E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32532 PF12171 zf-C2H2_jaz 7.40E-05 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0273 K25870 - csv:101213422 627.476