Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0273 | ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCAACCGGTGGCGGCTTCTCTCAACAACAACAAGATGCAAACCCTAACCCAAACCCGAACCCGAAACCGGCCGCCTTGGCTAAGAAGAAGAGAAACCTCCCTGGATGCCCAGATCCGGATGCTGAGGTTATTGCTTTATCGCCGAAATCTCTCATGGCGACGAACCGATTCATCTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAAAACCTACAACTTCATAGGCGAGGGCATAACCTTCCATGGAAGCTCAGGCAGAGGACTAACAAGGAACCAATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACTTGCGTCCACCACGATCCATCACGAGCTCTCGGTGACCTCACCGGCATAAAGAAGCATTTCAGCCGGAAACATGGGGAGAAGAAGTGGAAATGCGAGAAGTGTTCGAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGACCTGTGGGACGAGAGAATACAAGTGTGACTGTGGAACCCTATTTTCTAGGAAAGACAGCTTCATCACCCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATTACTTCAGTTTCAGCCACAAATATTCTCAACAATCTTAGAAACGATTCAGTTCTTCTTCATCATCATCCTCAGCAATCTCTCATCGATTCTCAACCTCTAGGAGATGTTTCTGGACTTTCCCAATTTAGCCATGCAAATTTCTTGAGAGATTTCAATGAGAATAATCTCGAAGAAAAGAATCGATCTCCATTGTCGCTCTGGTTAAACCAAGCTCAAGCTCAGCTTAATCCTCTTGAAACGGCAATTAATAACAACAATATCCCGAACTTCTTCTCTTCTTCTTCCTCCAATCTTTTCGGCTCGTTCAACGAATCCGGGGTTTCGATTTTACCGGTTATTAATGAAAAGGATGATCAGATTGAGAATGTTAAAGGAAATGGATCAAAATTAGCTACAGCTTCACTGCCACTTCCTTCATCATCATCTTCTTCTTCATTATTACCTTCTTCTTCTCCCATGTCAGCTACTGCCCTTTTACAGAAAGCTAATCTAATGGGTTCCACAAGAAGCAATAACAATAATACTCCGATGTTCAGTACCGGAACTTTCGGATTAATGAACTCTTCGTCTTCGTCTTCATCGTCTTCGTCTTCAATGAGCTTGAATTCTCTGAACAGAACCAAAAGTTTAACAATGCCGGATTCAATGCAACTAGGTGGAAACTCAGATTTAAGCTCAAATTGTCTCAGTCAACTATTTCTACCAGGGAAACAAAGTGAAATGGCACCGCCATCGAAGCTTCATCAAGATGTTATTAATGGAATGAGAAATAGTAATCAAACCAGAGACTTCCTCGGCATGGGAGGAGGGGGAGAAGGACATCGGCCGCCGTATTTACCGCCGCAGCTTGCAAAGTTTGGTTCCATAAACTCAGCGATGGGTTTAAGCCAATTCGCTGCCAATCACTGA | 1515 | 43.5 | MSSNPFSLLSSTGGGFSQQQQDANPNPNPNPKPAALAKKKRNLPGCPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVSATNILNNLRNDSVLLHHHPQQSLIDSQPLGDVSGLSQFSHANFLRDFNENNLEEKNRSPLSLWLNQAQAQLNPLETAINNNNIPNFFSSSSSNLFGSFNESGVSILPVINEKDDQIENVKGNGSKLATASLPLPSSSSSSSLLPSSSPMSATALLQKANLMGSTRSNNNNTPMFSTGTFGLMNSSSSSSSSSSSMSLNSLNRTKSLTMPDSMQLGGNSDLSSNCLSQLFLPGKQSEMAPPSKLHQDVINGMRNSNQTRDFLGMGGGGEGHRPPYLPPQLAKFGSINSAMGLSQFAANH | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2485642 | 2487678 | + | evm.model.ptg000018l.342 | HCH11g0273 | 553740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0273 | 504 | Gene3D | Classic Zinc Finger | 48 | 118 | - | - | |
HCH11g0273 | 504 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 67 | 89 | IPR013087 | - | |
HCH11g0273 | 504 | SMART | c2h2final6 | 109 | 139 | IPR013087 | - | |
HCH11g0273 | 504 | SMART | c2h2final6 | 144 | 164 | IPR013087 | - | |
HCH11g0273 | 504 | SMART | c2h2final6 | 67 | 89 | IPR013087 | - | |
HCH11g0273 | 504 | Pfam | Zinc finger, C2H2 type | 67 | 89 | IPR013087 | - | |
HCH11g0273 | 504 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 105 | 139 | - | - | |
HCH11g0273 | 504 | FunFam | protein indeterminate-domain 12-like | 46 | 115 | - | - | |
HCH11g0273 | 504 | Gene3D | Classic Zinc Finger | 119 | 201 | - | - | |
HCH11g0273 | 504 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 69 | 89 | IPR013087 | - | |
HCH11g0273 | 504 | MobiDBLite | consensus disorder prediction | 368 | 405 | - | - | |
HCH11g0273 | 504 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
HCH11g0273 | 504 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 143 | 167 | - | - | |
HCH11g0273 | 504 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
HCH11g0273 | 504 | SUPERFAMILY | beta-beta-alpha zinc fingers | 66 | 164 | IPR036236 | - | |
HCH11g0273 | 504 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 473 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH11g0273 | 504 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 122 | 201 | - | - | |
HCH11g0273 | 504 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 170 | 208 | - | - | |
HCH11g0273 | 504 | MobiDBLite | consensus disorder prediction | 334 | 354 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0273 | HCH-Chr11:2485642 | HCH14g0555 | HCH-Chr14:34492430 | 8.90E-88 | dispersed | |
HCH1g0131 | HCH-Chr1:9617379 | HCH11g0273 | HCH-Chr11:2485642 | 6.00E-86 | transposed | |
HCH3g0229 | HCH-Chr3:1474563 | HCH11g0273 | HCH-Chr11:2485642 | 2.20E-60 | transposed | |
HCH11g0273 | HCH-Chr11:2485642 | HCH3g1260 | HCH-Chr3:47541140 | 2.20E-94 | wgd | |
HCH11g0273 | HCH-Chr11:2485642 | HCH6g0106 | HCH-Chr6:1325702 | 7.70E-92 | wgd | |
HCH11g0273 | HCH-Chr11:2485642 | HCH9g0599 | HCH-Chr9:4017327 | 1.70E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32532 | PF12171 | zf-C2H2_jaz | 7.40E-05 | CL0361 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0273 | K25870 | - | csv:101213422 | 627.476 |