Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0276 ATGGGTAATATTGGTAGTAGCGGTTCTAATAATCGGCGGCGACACGGTAGCCGGCGAAACCACCCAGCTGCACCGCCTCCTCCGCCGCCGCAACCGGAAATTTCCGGTAACCGGTACGTCTTCGCCGCCGCCACGCCGTACCCATCGCAATACCCTAACCACCACCCTCCGAATCACCCGCCGCCGTATTACCAATACCCCGGTTACTTTCCGCCACCACCCGGTCCTCCACCGTCTATGCCGATGCCGTTACCGGCACCGTACGATCACCACCACCGTGGCGGTCACCCGCATATGGATCCGGCCCATTGGGTCGGCGGTAGGTACCCTTATGGGCCTACTATGCCTCCACAAGCCCCCTTTGTTGAGCATCAGAAAGCTGTCACTATAAGAAATGATGTTAATCTTAAAAAGGAAACTCTTAGGATTGAGCCTGATGATCAAAATCCCGGCAAATTCCTCGTATCCTTTACGTTCGATGCGACCGTCGCCGGGAGTATCACCATTCTCTTCTTCGCGAAAGAAGGTGAAGATTGTAACCTGACACCTATGAAAGAAAATAGTCTGGAACCAGTGACTGTCCATTTTGAACAAGGTCTGGGTCAGAAATTCATACAACCCTCTGGAACAGGAATAGATTTCTCCAAGTTTGATGAGGCGGAATTACTAAAAGTAAACGACACGGATGTTTATCCGTTAGCTGTGAAGGCTGAGGCTTCGACTGTCTACCAAACTGGGCCAGATGGTAGCCTAATACCTGAGACAATGAACTCTCAGATAACCCAAGCAGTGTTTGAGAAAGATAAAGGTGAATTCCAGGTAAAAGTGTTGAAACAAATCCTGTGGGTGAGTGGTATGAGATATGAGCTGCAAGAGATATATGGAATTGGCAATTCAGTTGAGGGTGATGTGGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGGGACACGACTGTCCTGCCCTGCCGACACATGTGCATGTGTAGTGGCTGCGCAAAAGTGTTGAGGTTCCAGACAAATCGATGCCCGATTTGCAGACAACCAGTCGATAGGCTTTTAGAGATAAAGGTCAGTAATGGACCTGATGAATGA 1110 49.73 MGNIGSSGSNNRRRHGSRRNHPAAPPPPPPQPEISGNRYVFAAATPYPSQYPNHHPPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGHPHMDPAHWVGGRYPYGPTMPPQAPFVEHQKAVTIRNDVNLKKETLRIEPDDQNPGKFLVSFTFDATVAGSITILFFAKEGEDCNLTPMKENSLEPVTVHFEQGLGQKFIQPSGTGIDFSKFDEAELLKVNDTDVYPLAVKAEASTVYQTGPDGSLIPETMNSQITQAVFEKDKGEFQVKVLKQILWVSGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIKVSNGPDE 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2505616 2507582 - evm.model.ptg000018l.339 HCH11g0276 553743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0276 369 FunFam probable E3 ubiquitin-protein ligase LOG2 297 362 - -
HCH11g0276 369 ProSiteProfiles Zinc finger RING-type profile. 313 352 IPR001841 -
HCH11g0276 369 PANTHER MAHOGUNIN 1 365 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
HCH11g0276 369 Pfam Zinc finger, C3HC4 type (RING finger) 311 357 - -
HCH11g0276 369 CDD mRING-HC-C3HC5_MGRN1-like 311 352 IPR045195 -
HCH11g0276 369 SMART ring_2 313 351 IPR001841 -
HCH11g0276 369 SUPERFAMILY RING/U-box 312 358 - -
HCH11g0276 369 MobiDBLite consensus disorder prediction 1 63 - -
HCH11g0276 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 362 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0276 HCH-Chr11:2505616 HCH7g1169 HCH-Chr7:44553207 2.60E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0276 K27504 - csv:101216150 590.882