Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0278 | ATGTCAAATGATATTGAAATCGGAGGTTCAGGCACCTCTCACGACAGGGATTATGTAGACCCACCGCCGGCTCCGATGATCGACGGCGAAGAGCTGACTAGATGGTCGTTTTATAGAGCAGTGATCGCTGAATTCGTTGCCACCTTTTTGTTTCTTTATGTTACGATTCTCACTGTGATTGATCATAAAAGCAAGATCGACCCACTCACCGGCGGTAACCAATGCGCCGGCGTTGGCCTCCTCGGCATCTCCTGGGCCTTCGGCGGCATGATCTTTGTTCTCGTTTACTGCACCGCCGGTGTTTCTGGAGGACATATCAACCCGGCGGTGACATTTGCAATGTTTCTGACGAGAAAGATTTCATTGGTCCGGGCGGCGTTGTATATGATAGCGCAATGCTCCGGCTCACTGTGCGGTTGCGCATTGGTAAGGACATTGCAAAGGGATCATTATTATAGGTACGGCGGCGGCGCCAATACACTCTCCGTCGGTTTCAGCGACGGCACAGGATTGGCGGTGGAGATTATTGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCCACCGATCCCAAGAGAAATGCTAGAGATTCCCATGTTCCGGTTTTGGCTCCTCTCCCCATTGGGTTTGCCGTGTTTATGGTTCATTTGGCGACGATTCCGATCACCGGCACCGGCATTAACCCGGCTCGGAGTATCGGAGCCGCTGTGATCATCAATGACGAGAAGGCATGGCATGATCAATGGATTTTCTGGGTCGGTCCATTCATCGGAGCCGCCATTGCTGCATTGTACTACCAATATGTTCTTCGAGCTTCTGCAGTAAAATCAATCGGATCTTTCAGGAACTCACCGTCAAATCGTTAG | 867 | 50.63 | MSNDIEIGGSGTSHDRDYVDPPPAPMIDGEELTRWSFYRAVIAEFVATFLFLYVTILTVIDHKSKIDPLTGGNQCAGVGLLGISWAFGGMIFVLVYCTAGVSGGHINPAVTFAMFLTRKISLVRAALYMIAQCSGSLCGCALVRTLQRDHYYRYGGGANTLSVGFSDGTGLAVEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIINDEKAWHDQWIFWVGPFIGAAIAALYYQYVLRASAVKSIGSFRNSPSNR | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2515246 | 2517795 | - | evm.model.ptg000018l.337 | HCH11g0278 | 553745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0278 | 288 | Pfam | Major intrinsic protein | 31 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | NCBIfam | MIP family channel protein | 43 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | CDD | MIP | 39 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
HCH11g0278 | 288 | Gene3D | Glycerol uptake facilitator protein. | 24 | 287 | IPR023271 | - | |
HCH11g0278 | 288 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 282 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
HCH11g0278 | 288 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
HCH11g0278 | 288 | SUPERFAMILY | Aquaporin-like | 31 | 271 | IPR023271 | - | |
HCH11g0278 | 288 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0278 | 288 | FunFam | Probable aquaporin PIP1-2 | 24 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0278 | HCH-Chr11:2515246 | HCH9g0590 | HCH-Chr9:3974820 | 3.00E-125 | dispersed | |
HCH1g0670 | HCH-Chr1:55597239 | HCH11g0278 | HCH-Chr11:2515246 | 2.90E-117 | wgd | |
HCH11g0278 | HCH-Chr11:2515246 | HCH13g0401 | HCH-Chr13:2747532 | 3.30E-119 | wgd | |
HCH11g0278 | HCH-Chr11:2515246 | HCH2g1176 | HCH-Chr2:54284098 | 7.70E-121 | wgd | |
HCH11g0278 | HCH-Chr11:2515246 | HCH9g0588 | HCH-Chr9:3961959 | 1.90E-127 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0278 | K09872 | - | csv:101214142 | 470.314 |