Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0278 ATGTCAAATGATATTGAAATCGGAGGTTCAGGCACCTCTCACGACAGGGATTATGTAGACCCACCGCCGGCTCCGATGATCGACGGCGAAGAGCTGACTAGATGGTCGTTTTATAGAGCAGTGATCGCTGAATTCGTTGCCACCTTTTTGTTTCTTTATGTTACGATTCTCACTGTGATTGATCATAAAAGCAAGATCGACCCACTCACCGGCGGTAACCAATGCGCCGGCGTTGGCCTCCTCGGCATCTCCTGGGCCTTCGGCGGCATGATCTTTGTTCTCGTTTACTGCACCGCCGGTGTTTCTGGAGGACATATCAACCCGGCGGTGACATTTGCAATGTTTCTGACGAGAAAGATTTCATTGGTCCGGGCGGCGTTGTATATGATAGCGCAATGCTCCGGCTCACTGTGCGGTTGCGCATTGGTAAGGACATTGCAAAGGGATCATTATTATAGGTACGGCGGCGGCGCCAATACACTCTCCGTCGGTTTCAGCGACGGCACAGGATTGGCGGTGGAGATTATTGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCCACCGATCCCAAGAGAAATGCTAGAGATTCCCATGTTCCGGTTTTGGCTCCTCTCCCCATTGGGTTTGCCGTGTTTATGGTTCATTTGGCGACGATTCCGATCACCGGCACCGGCATTAACCCGGCTCGGAGTATCGGAGCCGCTGTGATCATCAATGACGAGAAGGCATGGCATGATCAATGGATTTTCTGGGTCGGTCCATTCATCGGAGCCGCCATTGCTGCATTGTACTACCAATATGTTCTTCGAGCTTCTGCAGTAAAATCAATCGGATCTTTCAGGAACTCACCGTCAAATCGTTAG 867 50.63 MSNDIEIGGSGTSHDRDYVDPPPAPMIDGEELTRWSFYRAVIAEFVATFLFLYVTILTVIDHKSKIDPLTGGNQCAGVGLLGISWAFGGMIFVLVYCTAGVSGGHINPAVTFAMFLTRKISLVRAALYMIAQCSGSLCGCALVRTLQRDHYYRYGGGANTLSVGFSDGTGLAVEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIINDEKAWHDQWIFWVGPFIGAAIAALYYQYVLRASAVKSIGSFRNSPSNR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2515246 2517795 - evm.model.ptg000018l.337 HCH11g0278 553745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0278 288 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 ProSitePatterns MIP family signature. 105 113 IPR022357 -
HCH11g0278 288 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
HCH11g0278 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH11g0278 288 MobiDBLite consensus disorder prediction 1 20 - -
HCH11g0278 288 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
HCH11g0278 288 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0278 288 FunFam Probable aquaporin PIP1-2 24 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0278 HCH-Chr11:2515246 HCH9g0590 HCH-Chr9:3974820 3.00E-125 dispersed
HCH1g0670 HCH-Chr1:55597239 HCH11g0278 HCH-Chr11:2515246 2.90E-117 wgd
HCH11g0278 HCH-Chr11:2515246 HCH13g0401 HCH-Chr13:2747532 3.30E-119 wgd
HCH11g0278 HCH-Chr11:2515246 HCH2g1176 HCH-Chr2:54284098 7.70E-121 wgd
HCH11g0278 HCH-Chr11:2515246 HCH9g0588 HCH-Chr9:3961959 1.90E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0278 K09872 - csv:101214142 470.314