Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g0296 | ATGTCACAAGATTCTGAAGAGATAAAGACTACTGAGCAATGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTTCTTCTTCTTCTTCTTCTCCTTCTCCTCCTCCCCCACCTCCAATTGGAAACAGAGAAATGGAAAATCCCTCTGAGCCAAAGAAGGAAATCTCCGGCGCCAGCGCCGGAGAGAAGCCGGAGAGTGTCGCCGCCGTTGGGTTTGTAGAGCTTTTCAGATTTGCTGATGGGTTGGATTTAATTCTCATGGCAATTGGTTCTATTGGTGCTTTAGTTCATGGTTGTTCTTTGCCTCTGTTTTTAAGATTCTTTGCTGATCTTGTTAATTCTTTTGGGTCTTATGCTAATGATGTTGATAAAATGATGCAAGAAGTTTTGAAGTATGCATTTTACTTTCTTGTTGTTGGAGCTGCTATTTGGGCTTCATCATGGGCAGAGATTTCATGTTGGATGTGGACTGGAGAAAGGCAATCAACAAAATTAAGGATTAAGTATTTAGAAGCTGCTTTAGGACAAGACATTCAGTTCTTCGACACCGATGTTCGAACCTCGGATGTTGTTTTCGCTATTAATACTGATGCTGTTATGGTTCAAGATGCCATTAGTGAGAAGTTGGGGAATTTCATCCATTATATGGGAACTTTTGTGACTGGATTCGTTGTGGGGTTTACTGCTGTTTGGCAATTGGCATTGGTAACTCTTGCTGTGGTTCCTTTGATTGCTATTATTGGAGGGATTTACACTACTACTGCAGCTAAGCTCTCTGCCAAAAGCCAAGAAGCTCTTTCTGAAGCTGGGAATATTGTTGAACAGACTGTGGTTCAAATTCGAGTTGTTTTGGCGTTCGTTGGCGAATCGAGAGCTTTGCAGAAGTACTCGTCGGCATTGAAGGTTTCTCAGAAGATCGGTTATAAGAGTGGATTTTCTAAGGGTATGGGATTGGGCGCCACTTATTTCGTTGTTTTCTGCTGTTATGCTCTTCTGCTATGGTATGGAGGCTATCTGGTTCGGCACCATTCGACCAATGGTGGACTCGCCATCGCCACCATGTTTGCGGTGATGATCGGTGGACTGGCATTGGGGCAATCTGCGCCAAGCATGAGTTCCTTTGCGAAAGCTAAGGTTGCTGCTGCCAAAATCTACCGTATAATTGATCATAAACCTTCTCTAAATCGCAACAACGAATCGGGTTTGGAATTGGAGTCAGTTTCAGGACTAGTTGAGCTTAAAAATGTTGATTTCTCATACCCATCAAGACCAGATGTAAGGATCCTCAACAATTTCTCCCTCAATGTCCCTGCCGGAAAAACAATAGCTCTGGTCGGTAGCAGCGGCTCCGGTAAAAGCACCGTCGTCTCCCTGATTGAGAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCATGACATAAAAACTTTGAAGTTGAGATGGTTAAGGCAGCAAATAGGGCTGGTGAGCCAGGAGCCTGCTCTTTTTGCCACCACCATTAAGGAAAATATTCTCTTGGGAAGGCCTGATGCAGACCAAGTTGAGGTTGAGGAAGCTGCTAGAGTTGCCAATGCTCATTCATTCATCATCAAACTCACTGATGGCTACGACACTCAGGTAGGGGAAAGAGGATTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCTATCCTGCTCTTAGATGAGGCAACTAGTGCATTGGACTCTGAATCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATAGGAAGGACCACTCTTGTTATTGCCCATCGTCTCTCCACCATTCGCAAGGCCGACCTTGTAGCTGTACTCCAGCAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCATTTCTAAAGGAGAGAATGGTGTCTATGCTAAACTTATCCGAATGCAGGAGACGGCACATGAAACTGCTCTTAATAATGCAAGAAAGAGTAGCGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCGCCAATAATTGCAAGGAATTCTTCCTACGGTCGATCACCATATTCACGTCGGTTATCCGACTTCTCTACATCTGATTTTAGTCTATCTCTGGATGCTTCGCTCCCCAATTACCGCCTTGAAAAACTCGCCTTCAAGGAACAGGCCAGTTCCTTTTGGCGTCTAGTGAAGATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGTTCTGTTGTTTGCGGGTTTTTAAGCGCCTTCTTTGCTTATGTTCTAAGTGCTGTTCTCAGTGTCTATTACAATCCTGACCATGCTTACATGAGCAGAGAGATTATAAAGTACTGCTATTTATTAATTGGGCTTTCCTCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTAGGAGAAAACCTCACCAAACGAGTGAGGGAGAAAATGCTGACAGCAGTGTTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCTAAGATTGCTGCAAGGCTGGCCCTTGATGCTAACAATGTCAGATCCGCCATCGGAGACAGGATTTCTGTGATCGTACAGAACACATCACTTATGCTAGTTGCATGCACTGCCGGTTTTGTTTTGCAGTGGCGTCTTTCTCTTGTCCTCGTAGCGGTCTTCCCGGTTGTTGTCGCTGCCACTGTTTTACAGAAGATGTTCATGACTGGTTTTTCAGGAGACCTTGAAGCCTCCCATGCAAAGGCCACACAACTTGCAGGGGAGGCCATAGCCAATGTAAGGACTGTTGCTGCATTCAACTCAGAAGAAAAGATTGTTGGACTTTTCACAACTAACCTCCAGATTCCCCTACGGCGTTGCTTTTGGAAGGGACAGATTGCCGGTAGCGGATTTGGGGTAGCTCAGTTTTCACTTTACGCTTCCTATGCTCTGGGTCTTTGGTATGCCTCTTGGCTTGTAAAGCATGGGCTCTCTGATTTTTCCAAGGCAATCCGAGTGTTCATGGTCCTCATGGTTTCTGCAAACGGCGCAGCTGAAACACTAACTCTGGCTCCTGACTTCATTAAGGGTGGTCGAGCAATGCGTTCAGTCTTTTCCCTTCTTGATCGCAAAACTGAAATTGAACCTGACGATCCAGATGCTACCCCAGTTCCAGATAAACTTCGTGGGGAAGTTGAATTAAAACATGTTGACTTCTCCTACCCAACTCGTCCTGATATCCCTGTTTTTCGAGACCTTTGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGTCCTAGCGGGTGTGGTAAGAGCTCTGTTATTGCACTGATCCAAAGATTCTATGAGCCAACCTCAGGACGAGTTATGATTGATGGAAAAGATATTCGTAAATTCAATCTCAAGTCTCTAAGAAAGCACATTGCAGTGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATACATGAAAATATTGCATATGGCCACGAAACAGCCACCGAGGCCGAGATCATCGAAGCCGCTACTTTGGCCAATGCCCACAAGTTCATATCTTCATTGCCAGAAGGGTATAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTGTCTGGTGGACAGAAACAAAGAATTGCAATCGCCCGAGCTCTGATCAGGAAGCCTGCAGTGATGCTACTGGATGAGGCAACTAGTGCACTCGACGCCGAGTCTGAGCGATCTGTTCAGGAGGCTCTCGACCGAGCTTGTTCGGGAAAAACAACTATTGTTGTCGCTCATCGGTTATCTACCATTAGGAATGCTCATGTGATTGCAGTAATTGATGATGGTAAAGTGGCAGAGCAAGGATCACATTCACATTTGTTGAAAAATTATCCTGATGGGTGTTATGCCAGGATGATTCAGTTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCCACTTCATCAGCAAGAACTAGGGAGGGTGAGGAGAGAGAGAGCTAG | 4002 | 45.1 | MSQDSEEIKTTEQWKWSEMQGLELVSSSSSSPSPPPPPPIGNREMENPSEPKKEISGASAGEKPESVAAVGFVELFRFADGLDLILMAIGSIGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKLRIKYLEAALGQDIQFFDTDVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMGTFVTGFVVGFTAVWQLALVTLAVVPLIAIIGGIYTTTAAKLSAKSQEALSEAGNIVEQTVVQIRVVLAFVGESRALQKYSSALKVSQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHSTNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPSLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLTDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELISKGENGVYAKLIRMQETAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAYMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEEKIVGLFTTNLQIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFSLLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLCLRARAGKTLALVGPSGCGKSSVIALIQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAVVPQEPCLFAASIHENIAYGHETATEAEIIEAATLANAHKFISSLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKPAVMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREGEERES | 1333 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2688423 | 2694174 | - | evm.model.ptg000018l.319 | HCH11g0296 | 553763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g0296 | 1333 | ProSitePatterns | ABC transporters family signature. | 550 | 564 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | ProSitePatterns | ABC transporters family signature. | 1205 | 1219 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 733 | 1048 | - | - | |
| HCH11g0296 | 1333 | SMART | AAA_5 | 1093 | 1285 | IPR003593 | GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | SMART | AAA_5 | 438 | 624 | IPR003593 | GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | Gene3D | ABC transporter type 1, transmembrane domain | 706 | 906 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH11g0296 | 1333 | Gene3D | ABC transporter type 1, transmembrane domain | 74 | 664 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH11g0296 | 1333 | Pfam | ABC transporter transmembrane region | 745 | 1013 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH11g0296 | 1333 | Pfam | ABC transporter transmembrane region | 89 | 360 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH11g0296 | 1333 | FunFam | ABC transporter B family member 1 | 401 | 651 | - | - | |
| HCH11g0296 | 1333 | Pfam | ABC transporter | 429 | 578 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | SUPERFAMILY | ABC transporter transmembrane region | 75 | 389 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH11g0296 | 1333 | FunFam | ABC transporter B family member 19 | 1032 | 1054 | - | - | |
| HCH11g0296 | 1333 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 87 | 374 | - | - | |
| HCH11g0296 | 1333 | FunFam | ABC transporter B family member 1 | 74 | 409 | - | - | |
| HCH11g0296 | 1333 | Gene3D | - | 401 | 651 | IPR027417 | - | |
| HCH11g0296 | 1333 | Gene3D | - | 1055 | 1306 | IPR027417 | - | |
| HCH11g0296 | 1333 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 743 | 1030 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH11g0296 | 1333 | Pfam | ABC transporter | 1086 | 1233 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1057 | 1305 | IPR027417 | - | |
| HCH11g0296 | 1333 | CDD | ABC_MTABC3_MDL1_MDL2 | 1066 | 1305 | - | - | |
| HCH11g0296 | 1333 | MobiDBLite | consensus disorder prediction | 1314 | 1333 | - | - | |
| HCH11g0296 | 1333 | CDD | ABC_MTABC3_MDL1_MDL2 | 411 | 650 | - | - | |
| HCH11g0296 | 1333 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 411 | 647 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH11g0296 | 1333 | MobiDBLite | consensus disorder prediction | 22 | 61 | - | - | |
| HCH11g0296 | 1333 | FunFam | ABC transporter B family member 1 | 1056 | 1306 | - | - | |
| HCH11g0296 | 1333 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 88 | 376 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH11g0296 | 1333 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
| HCH11g0296 | 1333 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 402 | 650 | IPR027417 | - | |
| HCH11g0296 | 1333 | FunFam | ABC transporter B family member 1 | 722 | 1031 | - | - | |
| HCH11g0296 | 1333 | Gene3D | ABC transporter type 1, transmembrane domain | 965 | 1309 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH11g0296 | 1333 | PANTHER | ABC TRANSPORTER B FAMILY | 56 | 675 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| HCH11g0296 | 1333 | SUPERFAMILY | ABC transporter transmembrane region | 730 | 1052 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH11g0296 | 1333 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1066 | 1302 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0296 | HCH-Chr11:2688423 | HCH5g0253 | HCH-Chr5:1495504 | 0.00E+00 | dispersed | |
| HCH11g0296 | HCH-Chr11:2688423 | HCH13g0745 | HCH-Chr13:6458438 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g0296 | K05658 | - | csv:101220974 | 2291.54 |