Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0296 ATGTCACAAGATTCTGAAGAGATAAAGACTACTGAGCAATGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTTCTTCTTCTTCTTCTTCTCCTTCTCCTCCTCCCCCACCTCCAATTGGAAACAGAGAAATGGAAAATCCCTCTGAGCCAAAGAAGGAAATCTCCGGCGCCAGCGCCGGAGAGAAGCCGGAGAGTGTCGCCGCCGTTGGGTTTGTAGAGCTTTTCAGATTTGCTGATGGGTTGGATTTAATTCTCATGGCAATTGGTTCTATTGGTGCTTTAGTTCATGGTTGTTCTTTGCCTCTGTTTTTAAGATTCTTTGCTGATCTTGTTAATTCTTTTGGGTCTTATGCTAATGATGTTGATAAAATGATGCAAGAAGTTTTGAAGTATGCATTTTACTTTCTTGTTGTTGGAGCTGCTATTTGGGCTTCATCATGGGCAGAGATTTCATGTTGGATGTGGACTGGAGAAAGGCAATCAACAAAATTAAGGATTAAGTATTTAGAAGCTGCTTTAGGACAAGACATTCAGTTCTTCGACACCGATGTTCGAACCTCGGATGTTGTTTTCGCTATTAATACTGATGCTGTTATGGTTCAAGATGCCATTAGTGAGAAGTTGGGGAATTTCATCCATTATATGGGAACTTTTGTGACTGGATTCGTTGTGGGGTTTACTGCTGTTTGGCAATTGGCATTGGTAACTCTTGCTGTGGTTCCTTTGATTGCTATTATTGGAGGGATTTACACTACTACTGCAGCTAAGCTCTCTGCCAAAAGCCAAGAAGCTCTTTCTGAAGCTGGGAATATTGTTGAACAGACTGTGGTTCAAATTCGAGTTGTTTTGGCGTTCGTTGGCGAATCGAGAGCTTTGCAGAAGTACTCGTCGGCATTGAAGGTTTCTCAGAAGATCGGTTATAAGAGTGGATTTTCTAAGGGTATGGGATTGGGCGCCACTTATTTCGTTGTTTTCTGCTGTTATGCTCTTCTGCTATGGTATGGAGGCTATCTGGTTCGGCACCATTCGACCAATGGTGGACTCGCCATCGCCACCATGTTTGCGGTGATGATCGGTGGACTGGCATTGGGGCAATCTGCGCCAAGCATGAGTTCCTTTGCGAAAGCTAAGGTTGCTGCTGCCAAAATCTACCGTATAATTGATCATAAACCTTCTCTAAATCGCAACAACGAATCGGGTTTGGAATTGGAGTCAGTTTCAGGACTAGTTGAGCTTAAAAATGTTGATTTCTCATACCCATCAAGACCAGATGTAAGGATCCTCAACAATTTCTCCCTCAATGTCCCTGCCGGAAAAACAATAGCTCTGGTCGGTAGCAGCGGCTCCGGTAAAAGCACCGTCGTCTCCCTGATTGAGAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCATGACATAAAAACTTTGAAGTTGAGATGGTTAAGGCAGCAAATAGGGCTGGTGAGCCAGGAGCCTGCTCTTTTTGCCACCACCATTAAGGAAAATATTCTCTTGGGAAGGCCTGATGCAGACCAAGTTGAGGTTGAGGAAGCTGCTAGAGTTGCCAATGCTCATTCATTCATCATCAAACTCACTGATGGCTACGACACTCAGGTAGGGGAAAGAGGATTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCTATCCTGCTCTTAGATGAGGCAACTAGTGCATTGGACTCTGAATCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATAGGAAGGACCACTCTTGTTATTGCCCATCGTCTCTCCACCATTCGCAAGGCCGACCTTGTAGCTGTACTCCAGCAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCATTTCTAAAGGAGAGAATGGTGTCTATGCTAAACTTATCCGAATGCAGGAGACGGCACATGAAACTGCTCTTAATAATGCAAGAAAGAGTAGCGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCGCCAATAATTGCAAGGAATTCTTCCTACGGTCGATCACCATATTCACGTCGGTTATCCGACTTCTCTACATCTGATTTTAGTCTATCTCTGGATGCTTCGCTCCCCAATTACCGCCTTGAAAAACTCGCCTTCAAGGAACAGGCCAGTTCCTTTTGGCGTCTAGTGAAGATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGTTCTGTTGTTTGCGGGTTTTTAAGCGCCTTCTTTGCTTATGTTCTAAGTGCTGTTCTCAGTGTCTATTACAATCCTGACCATGCTTACATGAGCAGAGAGATTATAAAGTACTGCTATTTATTAATTGGGCTTTCCTCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTAGGAGAAAACCTCACCAAACGAGTGAGGGAGAAAATGCTGACAGCAGTGTTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCTAAGATTGCTGCAAGGCTGGCCCTTGATGCTAACAATGTCAGATCCGCCATCGGAGACAGGATTTCTGTGATCGTACAGAACACATCACTTATGCTAGTTGCATGCACTGCCGGTTTTGTTTTGCAGTGGCGTCTTTCTCTTGTCCTCGTAGCGGTCTTCCCGGTTGTTGTCGCTGCCACTGTTTTACAGAAGATGTTCATGACTGGTTTTTCAGGAGACCTTGAAGCCTCCCATGCAAAGGCCACACAACTTGCAGGGGAGGCCATAGCCAATGTAAGGACTGTTGCTGCATTCAACTCAGAAGAAAAGATTGTTGGACTTTTCACAACTAACCTCCAGATTCCCCTACGGCGTTGCTTTTGGAAGGGACAGATTGCCGGTAGCGGATTTGGGGTAGCTCAGTTTTCACTTTACGCTTCCTATGCTCTGGGTCTTTGGTATGCCTCTTGGCTTGTAAAGCATGGGCTCTCTGATTTTTCCAAGGCAATCCGAGTGTTCATGGTCCTCATGGTTTCTGCAAACGGCGCAGCTGAAACACTAACTCTGGCTCCTGACTTCATTAAGGGTGGTCGAGCAATGCGTTCAGTCTTTTCCCTTCTTGATCGCAAAACTGAAATTGAACCTGACGATCCAGATGCTACCCCAGTTCCAGATAAACTTCGTGGGGAAGTTGAATTAAAACATGTTGACTTCTCCTACCCAACTCGTCCTGATATCCCTGTTTTTCGAGACCTTTGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGTCCTAGCGGGTGTGGTAAGAGCTCTGTTATTGCACTGATCCAAAGATTCTATGAGCCAACCTCAGGACGAGTTATGATTGATGGAAAAGATATTCGTAAATTCAATCTCAAGTCTCTAAGAAAGCACATTGCAGTGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATACATGAAAATATTGCATATGGCCACGAAACAGCCACCGAGGCCGAGATCATCGAAGCCGCTACTTTGGCCAATGCCCACAAGTTCATATCTTCATTGCCAGAAGGGTATAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTGTCTGGTGGACAGAAACAAAGAATTGCAATCGCCCGAGCTCTGATCAGGAAGCCTGCAGTGATGCTACTGGATGAGGCAACTAGTGCACTCGACGCCGAGTCTGAGCGATCTGTTCAGGAGGCTCTCGACCGAGCTTGTTCGGGAAAAACAACTATTGTTGTCGCTCATCGGTTATCTACCATTAGGAATGCTCATGTGATTGCAGTAATTGATGATGGTAAAGTGGCAGAGCAAGGATCACATTCACATTTGTTGAAAAATTATCCTGATGGGTGTTATGCCAGGATGATTCAGTTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCCACTTCATCAGCAAGAACTAGGGAGGGTGAGGAGAGAGAGAGCTAG 4002 45.1 MSQDSEEIKTTEQWKWSEMQGLELVSSSSSSPSPPPPPPIGNREMENPSEPKKEISGASAGEKPESVAAVGFVELFRFADGLDLILMAIGSIGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKLRIKYLEAALGQDIQFFDTDVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMGTFVTGFVVGFTAVWQLALVTLAVVPLIAIIGGIYTTTAAKLSAKSQEALSEAGNIVEQTVVQIRVVLAFVGESRALQKYSSALKVSQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHSTNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPSLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLTDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELISKGENGVYAKLIRMQETAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAYMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEEKIVGLFTTNLQIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFSLLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLCLRARAGKTLALVGPSGCGKSSVIALIQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAVVPQEPCLFAASIHENIAYGHETATEAEIIEAATLANAHKFISSLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKPAVMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREGEERES 1333
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 2688423 2694174 - evm.model.ptg000018l.319 HCH11g0296 553763
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0296 1333 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH11g0296 1333 ProSitePatterns ABC transporters family signature. 1205 1219 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH11g0296 1333 CDD ABC_6TM_Pgp_ABCB1_D2_like 733 1048 - -
HCH11g0296 1333 SMART AAA_5 1093 1285 IPR003593 GO:0016887(InterPro)
HCH11g0296 1333 SMART AAA_5 438 624 IPR003593 GO:0016887(InterPro)
HCH11g0296 1333 Gene3D ABC transporter type 1, transmembrane domain 706 906 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH11g0296 1333 Gene3D ABC transporter type 1, transmembrane domain 74 664 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH11g0296 1333 Pfam ABC transporter transmembrane region 745 1013 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
HCH11g0296 1333 Pfam ABC transporter transmembrane region 89 360 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
HCH11g0296 1333 FunFam ABC transporter B family member 1 401 651 - -
HCH11g0296 1333 Pfam ABC transporter 429 578 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH11g0296 1333 SUPERFAMILY ABC transporter transmembrane region 75 389 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH11g0296 1333 FunFam ABC transporter B family member 19 1032 1054 - -
HCH11g0296 1333 CDD ABC_6TM_Pgp_ABCB1_D1_like 87 374 - -
HCH11g0296 1333 FunFam ABC transporter B family member 1 74 409 - -
HCH11g0296 1333 Gene3D - 401 651 IPR027417 -
HCH11g0296 1333 Gene3D - 1055 1306 IPR027417 -
HCH11g0296 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1030 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
HCH11g0296 1333 Pfam ABC transporter 1086 1233 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH11g0296 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1305 IPR027417 -
HCH11g0296 1333 CDD ABC_MTABC3_MDL1_MDL2 1066 1305 - -
HCH11g0296 1333 MobiDBLite consensus disorder prediction 1314 1333 - -
HCH11g0296 1333 CDD ABC_MTABC3_MDL1_MDL2 411 650 - -
HCH11g0296 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 411 647 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH11g0296 1333 MobiDBLite consensus disorder prediction 22 61 - -
HCH11g0296 1333 FunFam ABC transporter B family member 1 1056 1306 - -
HCH11g0296 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 376 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
HCH11g0296 1333 MobiDBLite consensus disorder prediction 30 44 - -
HCH11g0296 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 650 IPR027417 -
HCH11g0296 1333 FunFam ABC transporter B family member 1 722 1031 - -
HCH11g0296 1333 Gene3D ABC transporter type 1, transmembrane domain 965 1309 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH11g0296 1333 PANTHER ABC TRANSPORTER B FAMILY 56 675 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
HCH11g0296 1333 SUPERFAMILY ABC transporter transmembrane region 730 1052 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH11g0296 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1066 1302 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0296 HCH-Chr11:2688423 HCH5g0253 HCH-Chr5:1495504 0.00E+00 dispersed
HCH11g0296 HCH-Chr11:2688423 HCH13g0745 HCH-Chr13:6458438 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0296 K05658 - csv:101220974 2291.54