Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0297 ATGGCAAAATCTTACAATCCCGAAACACAAACCTACACTTCTCTCCGTCCTCCAATCAACTTCCCCTCAAACCCTAACCTCTCCCTCACCTCTTTCCTCTTCCAAAACTCTTCCTTTTTCCCCTCCAAACTCGCTCTCATCGACTCCGATTCCGGCGAATCTCTCACTTTCCATCAACTCAAAATCCACGTCTCCAAACTCGCCCATTCATTTCTCAAACTCGCGATTCAGAAACACGACGTCATCCTCATTTTCGCGCCAAATTCAATCCATTTCCCCATCTGTTTTCTCGCGGCCGCCGCTATCGGAGCTATTACCACGACGTGTAATCCTGCGTATACGTTCGCGGAAGTGTCTAAGCAAGTTAAGGATTGTAATCCTAAGCTTGTAATTACAGTTCCTGAATTGTGGGAGATTGCCGGTAAATTGAATTTGCCGTCGGTGATTATATCTGACTCTAAAACTTGTGCTGATTTTTCGAGTTCTGAAGTCTTGAGTTATTCCGATTTGATTGAGAACGCCGGAGGGGTCTCGGATTTGCCGGAGATTATTGTGGGTCAGAATGATTCTGCGGCTTTTTTGTATTCGTCGGGAACGACGGGGATTAGTAAGGGAGTGGTTCTCACTCATCGAAATTTCATATCGGTGTCATTAATGGTGACACAAGATCAAGACATTCTTGGAGAAACAAGCAATGTGTTTCTATGCTTCTTGCCGATGTTCCATGTCTTCGGATTATCTATAGTTGTTTATTCACAGCTTCGAAGAGGAAACACAGTCATTTCAATGGCGAAGTTCGAGTTGGAGAAGGCGTTAGAGACGGTGATGAAATACAGAGTAACCCATCTGTACGTTGTGCCACCAGTAATAATAGCTTTGGTGAAGCAAAATGAATCGATGAAGAAGAAGTATGATTTGTCATCAGTGAAGCAATTGTTATCAGGCGCGGCGCCATTGGGAAAAGATGTCATGGAAGAATGCTCAAAGATTATCCCTCGTGCCAAGATTCATCAGGGGTATGGTATGACAGAAACTTGTGGTATTATTTCAGTAGAGAATCCAGCAGAAGAAGCTCGCCTTTCGGGTTCGGCTGGACTTCTTGTTTCTGGAGTTGAAGCTCAAATTTTGAGTACAGATACAATGAAAGGTCTTCCACCAGGGGAAAAAGGAGAAATATGTGTACGAGGACCTAATATGATGCAAGGCTATTTCAAAAATCAGAAAGCCACAAGTCAAACCATAGATGATCAAGGATGGGTGCATACGGGCGATATCGGATATTTCAGTGAAGCGGGAGAATTATTTGTTGTGGACCGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCTGCAGAACTTGAAGGGCTGCTACTTTCTCACCCTGAAATATTAGATGCCATTGTGATCCCATATCCTGATGCTAAAGCCGGTGAGGTCCCCGTTGCGTTTGTTGTTCGTTCACCTAATAGTGCCATAAAGGAAGAAGATGTTCAGAAATTTATTGCACAGCAGGTTGCACCATTCAAAAGATTAAGGAGAGTGACATTTATAAAAAGCGTTCCAAAGTCGGCTTCGGGAAAACTTTTGAGAAAGGATCTTATAGCTAGTGTCCGAGCGAAAATTTGA 1635 43.3 MAKSYNPETQTYTSLRPPINFPSNPNLSLTSFLFQNSSFFPSKLALIDSDSGESLTFHQLKIHVSKLAHSFLKLAIQKHDVILIFAPNSIHFPICFLAAAAIGAITTTCNPAYTFAEVSKQVKDCNPKLVITVPELWEIAGKLNLPSVIISDSKTCADFSSSEVLSYSDLIENAGGVSDLPEIIVGQNDSAAFLYSSGTTGISKGVVLTHRNFISVSLMVTQDQDILGETSNVFLCFLPMFHVFGLSIVVYSQLRRGNTVISMAKFELEKALETVMKYRVTHLYVVPPVIIALVKQNESMKKKYDLSSVKQLLSGAAPLGKDVMEECSKIIPRAKIHQGYGMTETCGIISVENPAEEARLSGSAGLLVSGVEAQILSTDTMKGLPPGEKGEICVRGPNMMQGYFKNQKATSQTIDDQGWVHTGDIGYFSEAGELFVVDRIKELIKCYGFQVAPAELEGLLLSHPEILDAIVIPYPDAKAGEVPVAFVVRSPNSAIKEEDVQKFIAQQVAPFKRLRRVTFIKSVPKSASGKLLRKDLIASVRAKI 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2718502 2723553 - evm.model.ptg000018l.318 HCH11g0297 553764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0297 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
HCH11g0297 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 536 - GO:0016405(PANTHER)
HCH11g0297 544 Pfam AMP-binding enzyme 38 404 IPR000873 -
HCH11g0297 544 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
HCH11g0297 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
HCH11g0297 544 CDD 4CL 21 536 - -
HCH11g0297 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 441 - -
HCH11g0297 544 Gene3D - 442 543 IPR045851 -
HCH11g0297 544 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
HCH11g0297 544 Gene3D - 11 441 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0297 HCH-Chr11:2718502 HCH3g1211 HCH-Chr3:44340792 6.20E-188 dispersed
HCH11g0297 HCH-Chr11:2718502 HCH12g0078 HCH-Chr12:402955 1.00E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0297 K01904 - csv:101204417 819.305