Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0315 | ATGCCGTTCCGCCGATTAGTCATCACCGTTGGCCGGCCGCAGGAGGCAACACATCCCGACGCCTTAAAGGCGGCGTTGGCCGAGTTTTTCTCCACCGCAATTTTTGTTTTTGCCGGCCAAGGGTCCGGCTTAGCTTTTTCTAAGCTCACCCATGGCGCTCCCACTACCCCTGCTGGCCTCATCATTGCCGCTGTGGCTCACGGTTTTGCTCTCTTTGTTGCTGTCTCCGTCGGTGCTAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACTTTTGGCGCTTTGATCGGTGGTAATATTACTGTCTTACGCGGCATTCTCTACTGGATAGCTCAGCTTCTTGGGGCTGTTGTCGCTAATCTGTTGCTTAAATTCGTCATTACAGACGTGGCCATATCGGGTTTTTCGCTTTCTTCCGGAGTCGGGGTGTGGAATGCATTCGTGTTCGAGATCGTAATGACGTTTGGATTAGTCTATACAGTCTACGCCACCGCGATCGATCCCAAAAAGGGTGAGTTAGGAACGATAGCTCCGATCGCGATCGGTTTCATCGTCGCAGCCAACATTTTGGTGGGTGGACCTTTCACCGGCGCCTCCATGAACCCAGCTGTGGCTTTTGGACCCGCCGTCGGAGCTTGGTCGTGGGACAACCACTGGATTTATTGGGCCGGTCCCCTCATCGGCGGCGGTTTGGCCGGACTTGTCTATGAACTCTTCTTCATTGGCTACACTCATGAGCCGCTACCCACCACTGACTACTAG | 762 | 54.59 | MPFRRLVITVGRPQEATHPDALKAALAEFFSTAIFVFAGQGSGLAFSKLTHGAPTTPAGLIIAAVAHGFALFVAVSVGANISGGHVNPAVTFGALIGGNITVLRGILYWIAQLLGAVVANLLLKFVITDVAISGFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAIDPKKGELGTIAPIAIGFIVAANILVGGPFTGASMNPAVAFGPAVGAWSWDNHWIYWAGPLIGGGLAGLVYELFFIGYTHEPLPTTDY | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2874028 | 2875530 | - | evm.model.ptg000018l.300 | HCH11g0315 | 553782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0315 | 253 | FunFam | Probable aquaporin TIP1-1 | 6 | 253 | - | - | |
HCH11g0315 | 253 | Gene3D | Glycerol uptake facilitator protein. | 6 | 251 | IPR023271 | - | |
HCH11g0315 | 253 | CDD | MIP | 23 | 239 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | PANTHER | AQUAPORIN-8 | 8 | 248 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
HCH11g0315 | 253 | PRINTS | Major intrinsic protein family signature | 182 | 204 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | PRINTS | Major intrinsic protein family signature | 219 | 239 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | PRINTS | Major intrinsic protein family signature | 67 | 91 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | PRINTS | Major intrinsic protein family signature | 23 | 42 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | PRINTS | Major intrinsic protein family signature | 104 | 123 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | PRINTS | Major intrinsic protein family signature | 149 | 167 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH11g0315 | 253 | SUPERFAMILY | Aquaporin-like | 14 | 249 | IPR023271 | - | |
HCH11g0315 | 253 | ProSitePatterns | MIP family signature. | 85 | 93 | IPR022357 | - | |
HCH11g0315 | 253 | Pfam | Major intrinsic protein | 16 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0315 | HCH-Chr11:2874028 | HCH3g1317 | HCH-Chr3:50693490 | 4.30E-91 | dispersed | |
HCH13g0450 | HCH-Chr13:3130903 | HCH11g0315 | HCH-Chr11:2874028 | 1.40E-94 | transposed | |
HCH11g0315 | HCH-Chr11:2874028 | HCH9g0550 | HCH-Chr9:3606065 | 4.40E-104 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0315 | K09873 | - | csv:101222386 | 438.728 |