Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0315 ATGCCGTTCCGCCGATTAGTCATCACCGTTGGCCGGCCGCAGGAGGCAACACATCCCGACGCCTTAAAGGCGGCGTTGGCCGAGTTTTTCTCCACCGCAATTTTTGTTTTTGCCGGCCAAGGGTCCGGCTTAGCTTTTTCTAAGCTCACCCATGGCGCTCCCACTACCCCTGCTGGCCTCATCATTGCCGCTGTGGCTCACGGTTTTGCTCTCTTTGTTGCTGTCTCCGTCGGTGCTAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACTTTTGGCGCTTTGATCGGTGGTAATATTACTGTCTTACGCGGCATTCTCTACTGGATAGCTCAGCTTCTTGGGGCTGTTGTCGCTAATCTGTTGCTTAAATTCGTCATTACAGACGTGGCCATATCGGGTTTTTCGCTTTCTTCCGGAGTCGGGGTGTGGAATGCATTCGTGTTCGAGATCGTAATGACGTTTGGATTAGTCTATACAGTCTACGCCACCGCGATCGATCCCAAAAAGGGTGAGTTAGGAACGATAGCTCCGATCGCGATCGGTTTCATCGTCGCAGCCAACATTTTGGTGGGTGGACCTTTCACCGGCGCCTCCATGAACCCAGCTGTGGCTTTTGGACCCGCCGTCGGAGCTTGGTCGTGGGACAACCACTGGATTTATTGGGCCGGTCCCCTCATCGGCGGCGGTTTGGCCGGACTTGTCTATGAACTCTTCTTCATTGGCTACACTCATGAGCCGCTACCCACCACTGACTACTAG 762 54.59 MPFRRLVITVGRPQEATHPDALKAALAEFFSTAIFVFAGQGSGLAFSKLTHGAPTTPAGLIIAAVAHGFALFVAVSVGANISGGHVNPAVTFGALIGGNITVLRGILYWIAQLLGAVVANLLLKFVITDVAISGFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAIDPKKGELGTIAPIAIGFIVAANILVGGPFTGASMNPAVAFGPAVGAWSWDNHWIYWAGPLIGGGLAGLVYELFFIGYTHEPLPTTDY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2874028 2875530 - evm.model.ptg000018l.300 HCH11g0315 553782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0315 253 FunFam Probable aquaporin TIP1-1 6 253 - -
HCH11g0315 253 Gene3D Glycerol uptake facilitator protein. 6 251 IPR023271 -
HCH11g0315 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 PANTHER AQUAPORIN-8 8 248 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH11g0315 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH11g0315 253 SUPERFAMILY Aquaporin-like 14 249 IPR023271 -
HCH11g0315 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
HCH11g0315 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0315 HCH-Chr11:2874028 HCH3g1317 HCH-Chr3:50693490 4.30E-91 dispersed
HCH13g0450 HCH-Chr13:3130903 HCH11g0315 HCH-Chr11:2874028 1.40E-94 transposed
HCH11g0315 HCH-Chr11:2874028 HCH9g0550 HCH-Chr9:3606065 4.40E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0315 K09873 - csv:101222386 438.728