Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0319 ATGGACAGAGAATGGGGTTCTAAGCCAGGCAGCGGTGGCGCAGCCTCTGCTCAGAATGAAGCTATTGATCGGAGAGAGCGTCTACGGCGGCTCGCTCTTGAAACCATCGATCTCGCTAAAGATCCCTATTTCATGCGCAATCATCTTGGAAGTTACGAGTGTAAGCTTTGCTTGACTTTGCATAACAATGAGGGGAATTACTTGGCGCACACGCAAGGGAAACGGCATCAGACTAATTTGGCGAAAAGAGCAGCTCGTGAAGCTAAGGAAGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTTTCTGTTCGTAAAACAGTTAAAATCGGAAGACCTGGGTATCGAGTGACAAAGCAATTTGATCATGAAACGAAGCAAAGATCTCTTCTTTTCCAGATTGAATATCCAGAAATTGAAGACCTAGCAAAACCAAGGCATCGGTTTATGTCTTCTTATGAGCAGCGGGTGCAACCATTTGATAAAAGGTACCAATATCTTCTGTGTGCAGCTGAGCCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCTACACAAAAGTTCTTCTCACACTGGGATCCAGACTCGAAAATGTTCACGTTGCAATTGTACTTCAAAACCAAGCCCCTAGAGACGAACAAGCCACAAACCGGTCCAGCAGATGATGGAACCGGGGCACCTGGTGCACCACCAAGGCCTCTTCCCCCACCACCGCAAGCTCCACCACCACCACCTCCTCCATCACAGCAAGGGGCACCACCAAGAGTTCCTCCACCTCCAATGCCAGGATTTTTACCACCTCCCCCTTCCATCATGGCAAATGGTCCTAGACCAATGCCTCCTGGCGGAACTCCACCGATTCCTCCACCACCCCCGGTTGGCAATAACACAATGGTGAGTTTCACTCAGATGAATAGACCTCCTATGCCGCCACCTCACGGTTTTCCAGGCCAACAGATTCAGAACCATGGTGTTCATCATCCTCCACCACCCCCTAATATGGGATAG 1023 49.17 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDHETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYEIIAFKVPSTEIDKSTQKFFSHWDPDSKMFTLQLYFKTKPLETNKPQTGPADDGTGAPGAPPRPLPPPPQAPPPPPPPSQQGAPPRVPPPPMPGFLPPPPSIMANGPRPMPPGGTPPIPPPPPVGNNTMVSFTQMNRPPMPPPHGFPGQQIQNHGVHHPPPPPNMG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2929911 2932630 + evm.model.ptg000018l.296 HCH11g0319 553786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0319 340 MobiDBLite consensus disorder prediction 1 21 - -
HCH11g0319 340 PRINTS Proline rich extensin signature 212 224 - -
HCH11g0319 340 PRINTS Proline rich extensin signature 233 249 - -
HCH11g0319 340 PRINTS Proline rich extensin signature 274 295 - -
HCH11g0319 340 PRINTS Proline rich extensin signature 297 313 - -
HCH11g0319 340 PRINTS Proline rich extensin signature 256 268 - -
HCH11g0319 340 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
HCH11g0319 340 SMART CactinC_cactus_3 89 214 - -
HCH11g0319 340 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH11g0319 340 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
HCH11g0319 340 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 337 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
HCH11g0319 340 Gene3D - 93 218 - -
HCH11g0319 340 FunFam Splicing factor 3a subunit 2 94 218 - -
HCH11g0319 340 MobiDBLite consensus disorder prediction 215 340 - -
HCH11g0319 340 Pfam Zinc-finger of C2H2 type 52 76 IPR013087 -
HCH11g0319 340 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
HCH11g0319 340 MobiDBLite consensus disorder prediction 231 300 - -
HCH11g0319 340 Gene3D Classic Zinc Finger 46 89 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0319 K12826 - csv:101202831 447.203