Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0338 ATGAGGATCAAAACAAGTCTTTCCTTTTGGCTCTCTACTTTTGTCATTGCAGCCCTTTCCATCATCATAGCCTTCCACTCCTTTCCGCGTTCCCTGACCGCTATAGTCGCCGCCTTCGATCCTCAAGACACTACTTTTGAGCTTGCTGTCATCAGCAGGCTGCTGAAAGAGAGTGGTTTGGATGATTTGTTCGCTCTTATGACTCGAACCGTGACCGGACGCCTTCAACCGTGGAAGCAGAGGAGAAAATGTGATGAGACAAGATGGAAGTCTGAGCTGATAGCTCTCTACAATGTTTCACTCACTCTAACTGTTGACTTGAAGGGTTGTGCAAATTATAGTAGTGTGCAAAAGGCAGTTGATGCTGTTCCTGATTATGGCTGCTCTAGGACCCTTATTATAATTGACTCTGGCACTTACAGGGAGAAGGTGGTGGTAGAAGCAAACAAGACAAATTTGATAATTCAAGGTCAGGGTTACTTGAACACTGCAATAGAGTGGAATGATACTGCCAATTCCACAGGAGGGACTATCTATAGCTCTTCAGTGACCATCTTTGCTCCCAACTTCACTGCATTCAACATTAGCTTCAAGAATGCAGCTCCTGAGCCAGCTCCAGGAATGGGGGGAGGACAGGCAGTAGCACTTCGAATTATAGGAGATGAAGCTGCATTTTATGGATGTGGATTCTATGGAGCTCAAGACACACTCAATGATGACAAGGGAAGACATTACTTCAAAGAATGTTTCATTCAAGGATCCATAGATTTCATCTTTGGCAATGCCAGATCGCTTTACGAAGGATGCACAATCAACTCCATAGCAAGGGAAGTTTCAGAAGGAATTAGTGGAGCTATCACTGCTCATGCAAGGCAGTCAACCAATGAGCAAACTGGGTATGCTTTTGTGAACTGCATCATCAACGGGTCTGGGAAGGTATGGCTCGGCCGAGCGTGGGGAATTAGCGCGAGTGTGGTGATTTCTAAGACATACATGACTGAAGTTGTGGCTTCAGATGGATGGAATGATTGGAAGGATCCTTCCAGAGACCAGACTGTTTTCTTTGGAGAATATGATTGCTTTGGACCTGGAGCAAATTACAGTTTAAGAGTGCCATATTCAAAGCTACTGAAAAAAGATGAAGCAGAACCTTACTTGGATATATCATATATTGATGGAAATGAATGGCTAATCTATCAGCAGACCACATTATCTACAATGTAG 1224 44.04 MRIKTSLSFWLSTFVIAALSIIIAFHSFPRSLTAIVAAFDPQDTTFELAVISRLLKESGLDDLFALMTRTVTGRLQPWKQRRKCDETRWKSELIALYNVSLTLTVDLKGCANYSSVQKAVDAVPDYGCSRTLIIIDSGTYREKVVVEANKTNLIIQGQGYLNTAIEWNDTANSTGGTIYSSSVTIFAPNFTAFNISFKNAAPEPAPGMGGGQAVALRIIGDEAAFYGCGFYGAQDTLNDDKGRHYFKECFIQGSIDFIFGNARSLYEGCTINSIAREVSEGISGAITAHARQSTNEQTGYAFVNCIINGSGKVWLGRAWGISASVVISKTYMTEVVASDGWNDWKDPSRDQTVFFGEYDCFGPGANYSLRVPYSKLLKKDEAEPYLDISYIDGNEWLIYQQTTLSTM 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3130045 3132131 - evm.model.ptg000018l.277 HCH11g0338 553805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0338 407 FunFam Pectinesterase 97 402 - -
HCH11g0338 407 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
HCH11g0338 407 Pfam Pectinesterase 104 394 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH11g0338 407 SUPERFAMILY Pectin lyase-like 99 398 IPR011050 -
HCH11g0338 407 Gene3D - 96 406 IPR012334 -
HCH11g0338 407 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 397 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0338 HCH-Chr11:3130045 HCH6g1323 HCH-Chr6:47351196 5.10E-102 dispersed
HCH11g0338 HCH-Chr11:3130045 HCH4g1103 HCH-Chr4:7208766 7.40E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0338 - - - 0.0