Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0341 ATGGTCGCCGGAAAAGATAAAACCCCAACGGAAACAGACACCACCACCGCGGTCGCCGCCTCCGCCGAGAGACAAAACAAAGCAAGACTAGCTATACTAGAACTCGCGAACATGATAAGTGTTCCTATGTGTCTTAACGCTATCGTGCACCTCAATGTTGCTGATGCCATTTGGCAAGGTGGTTCCAATGATCCACTTTCTGCCGCTGAAATTCTGACACGTGTCCTTCCATCTGGTGGTGATGCTCATAATCTTGAACGGATTCTTCGTATGCTTAGTAGTTATGGTGTGTTCGCGGAGCATCTGATTATGAGCGGGTCTGATTCTGGTCGTAGGTATTCTCTTACTGATGTTGGAAAAACTTTGGTTACTGATTCTGATGGTCTTTCTTATGCGCCCTACGTGCTCCAACACCATCAGGACGCGCTGATGAGAGCGTGGCCAATGGTACACGAGGCGGCGGTGGACGCCACGACGGAGCCGTTCGTGAAAGCGAACGGAGAGGCGGCGTATAATTACTACGGGCAAAAGCCGGAAATGAATGAATTAATGCAGAGAGCGATGTCCGGCGTATCTGTGCCGTTCATGAAGGCGATATTGGACGGCTACGATGGGTTTAAAGGAGTAGAGAAATTGGTAGATGTGGGAGGGAGTGCAGGGGATTGCCTGCGGATGATTCTACAGAAACATTCTCATATTAAAGAAGGGATTAATTTTGATCTCCCTGAGGTTGTGGCCAAGGCACCCACCATTCATGGGGTGACCCACGTGGGAGGCGACATGTTCAAATCCATTCCCAGGGGTGATGCTATTTTCATGAAGTGGGTTTTGTCAACATGGACGGACGATGAATGCAAGATTATATTGGAAAACTGCTGCAACTCTCTCCCGGCCGGTGGAAAACTGATCGCCTGTGAGCCAACCCTGCCGGAGAAAACGGACGACAGTCACCGGACACGCGCCCTTTTAGCTAATGACATATTTATCATGACGATCTATAAAGCAAAAAGTAAGCAGAGAATGGAGGAGCAGTTCCGGCAGCTCGGTGTCGCTGCCGGATTCTCCACCCTCCGAGCATTACATATTGATTACTTCTATTGTTTGTTGGAATTCCAAAAGTGA 1122 49.02 MVAGKDKTPTETDTTTAVAASAERQNKARLAILELANMISVPMCLNAIVHLNVADAIWQGGSNDPLSAAEILTRVLPSGGDAHNLERILRMLSSYGVFAEHLIMSGSDSGRRYSLTDVGKTLVTDSDGLSYAPYVLQHHQDALMRAWPMVHEAAVDATTEPFVKANGEAAYNYYGQKPEMNELMQRAMSGVSVPFMKAILDGYDGFKGVEKLVDVGGSAGDCLRMILQKHSHIKEGINFDLPEVVAKAPTIHGVTHVGGDMFKSIPRGDAIFMKWVLSTWTDDECKIILENCCNSLPAGGKLIACEPTLPEKTDDSHRTRALLANDIFIMTIYKAKSKQRMEEQFRQLGVAAGFSTLRALHIDYFYCLLEFQK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3184121 3188444 - evm.model.ptg000018l.274 HCH11g0341 553808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0341 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 371 IPR029063 -
HCH11g0341 373 PIRSF O-mtase 10 373 IPR016461 GO:0008168(InterPro)
HCH11g0341 373 PANTHER O-METHYLTRANSFERASE 35 355 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
HCH11g0341 373 MobiDBLite consensus disorder prediction 1 20 - -
HCH11g0341 373 SUPERFAMILY Winged helix DNA-binding domain 26 127 IPR036390 -
HCH11g0341 373 Gene3D - 13 127 IPR036388 -
HCH11g0341 373 Gene3D Vaccinia Virus protein VP39 128 373 IPR029063 -
HCH11g0341 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 373 IPR016461 GO:0008168(InterPro)
HCH11g0341 373 Pfam O-methyltransferase domain 153 355 IPR001077 GO:0008171(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0341 HCH-Chr11:3184121 HCH11g1355 HCH-Chr11:45377376 1.20E-57 dispersed
HCH11g0341 HCH-Chr11:3184121 HCH2g0700 HCH-Chr2:50786822 4.30E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0341 - - - 0.0