Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0348 | ATGAGGCTTTTTTCTTTCTTGATCTTCCCTTTAATGGCCGTGTTTTTTCCCATTAAAGTGATTTTCTGTGACTTTCCTGCCAGAGTTCTTCCTCTGGAGAGAGTTTTTCCTTTAACTCATGATGTAGAAATCGAAGCTCTAAGAGTTAGAGACAGGGTCAGACATTCTAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCTGATCCTTACCTTGCCGGGCTTTATTTTACTAAAGTCAAACTGGGCAGTCCCCCGAGGGAATTTACCGTGCAGATCGATACGGGTAGTGATATATTGTGGATCACCTGCAATTATTGCAATGGCTGCCCACGATCAAGTGGACTCGGAATTCAACTAAATTTCTTTGATGCTACCAGCTCATCAACTGCTTCTCTCATTCCTTGCTCTGACCCAATGTGCAATTCTGCGTTCCAATCAACTGCAACTCAATGTTTGCCTCAGAGTAATCAATGCGGTTACATGTTTCAATATGGTGACGGAAGTGGAACATCCGGTTATTATGTATCTGAGTCGATGTATTTTGACATGGTTCTGGGGCGTTCTATGATTGCCAACTCTTCAGCTACCATTGTTTTCGGTTGTAGTACCTATCAGTCTGGGGACTTGACTAAGACAGACAAAGCAGTAGATGGCATTTTCGGATTTGGCCCTGGGGATTTTTCTGTCATATCACAGTTGTCAGTCCGAGGGATAACCCCTAAAATATTTTCGCATTGTTTAAAAGGAGAAGGCAATGGTGGTGGTATATTGGTTCTTGGTGAGATTTTGGAGCCTGGCATTGTTTATAGCCCACTCGTACCCTCTCAGCCCCACTATAACTTATATCTGCAAAGCATTTCTGTCAACGGTCAAATGTTGCCAATCGATCCATCTGTATTTGCAACGTCAAACACTCGAGGCACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTGGAAGAAGCTTATATTCCATTTGTCAGTGCTATTACTGCTTCTGTTTCCCAATCTGTGACTCCTACCATTTCAAAGGGAAATCAGTGTTATCTAGTATCCACCAGTGTAGATGGGATATTTCCTCCGGTCAGCCTAAACTTTGCCGGCAGTGCGTCCATGGTGTTAAAACCCGAAGAGTATCTCGTTCATCTTGGCTTTTATGAGGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTGAGGAAGGAGTTACAATTTTAGGAGATCTTGTGATGAAAGATAAGATTTTCGTCTACGATTTAGCTCATCGGAGAATCGGGTGGGCCAACTACGATTGTTCACAGGCTGTAAATGTATCCGTAACTTCCGGGAAGAACAAGTTCGTCAATGCGGGCCAGCTGAACGTGAGCAGCTCGACACGAGATAAGCTCCTTCAGTTGCTGACTATGGAAGCCATAGCTCTCTTGATATGTATCATTTTAATTTCTTTCTGTGTGTGTGGAAAAATGGCGGTTGTTTCTCAGACTGTTATTGCGTTACCGGCTTCTCTCTACGTCGGCGATCTTCATCCCGATACCACCGGCGAAGAATTGCTTAATGCTTTCTCTGAATTCAAAAGCATTGCTTCTGTTCGTATTTGTAGAGATTCTTCCACTGGCCGTTCTCTCTCTTACGGCTATGTCAATTTTATCTCTCCTCAAGAAGCAATCCAAGCTATGGAGGCAATGAATCATACGGTGTTGAAAGGTAAAGTGATAAGACTTATGTGGTCCCAGCGCGAATCTGATGGCAGAAGAAGTGGAATTGGAAATCTGTTTGTTAAGAACTTGAGTGATTCAATCAATAGTTTGGTACTTGAAGACATATTCAAGAAATTTGGGAATGTCGTGTCCTGCAAAGTTGCTATGTCTGATGATGGAAAAAGTAGAGGATATGGCTTTGTTCAATTTGAGTGTGAGGATTCAGCAAATGCTGCAATTGAGAAACTAAATGGTTCTACTGTTGAGGACAAGCAGATATATGTTGGAAAGTTTGTCAAAAGAAGCGATCGAGTTTTGGCCAATCTTGATGCTAAATATACAAATCTGTATGTGAAAAATCTGGATCCAGAAGTTAGGGAAGAGCTTCTGATGGAAAAGTTCTCTGAGTTTGGAAAAGTTTCCAGCCTGATTATTTCAAAGGATGGGAATGGAATGTCAAGGGGTTTTGGCTTTATAAATTTTGACAACTGTGATGATGCTAAACGGGCATTGGAAGCGCTGAATGGATCACAACTTGGCTCAAAGGTTATCTACATTGCAAGGGCACAAAAGAAGTTAGAACGTGAACATATATTACGTCGACATTTTGAAGAGAAACGTATGGAGCAAATATTGAAATTCAAGGACTCAAATGTGTATGTGAAGAACATCGACGATGATGCTACTGATGAAGAGCTCAGAGAATTTTTCAGTAAGTGTGGCACAATCACTTCGTCCAAACTTATGCGAGATGACAAGGGAATAAGCAAAGGGTTTGGATTTGTTTGTTACTCTAATTCTGAGGAAGCTAATAAAGCTGTGAACACTTTGCATGGATGTATGTTTCACCGGAAGCCACTCTATGTGGCTATAGCACAGAGGAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTTCACAACGATTTGCAGGGCTAGCCGGATCACCATCAACTATTCTTTTTCCTGGTGGGTATCCACCTTATTACTACACAGCACCAGAAGTTATTCCACAAGCGCCATCGCATCCAGGCCTGATGTTTCAGCCTTTAGGATTGAAGCCTGGATGGAGAGCTAATACCTTTGCAACTCCAACTAGACCTGGCTTTCAACCTTCACCAGTACCTGTTTTTCCAAATGCTCCTAGACAACCCAGGCAAAACAGAGGCAAAATGAATGGACAGGTGCTGTCTCAAAATCGTGCCCAGGCTGTCCCCTATGTGCAAAATTCACGAGAAACCAACCAACCAGTAGTTTTGGCAAAAGCTTCCGGCAATCAGCAGTGGAATGGACCTGTTAAGTACATGCCAAATGCACGTCCACGTGAAACAAATAAATCTTCTGCAGCGTCATCTGCTGCTATTTTTAACGCTGTTGGAGACATCTATCAGGGATCACAAATGTTGAGTAGTATGGTTGCTGCCTCTCCTGAACAACAGAAACAAACGCTTGGCGAGCATCTCTACCCACTGGTTCAGAAACACAAGCCAGAGCTTGCTTCCAAAATTACAGGGATGCTTCTGGAGATGGACAACTCAGAATTGCTGCTTCTGTTGGAGTCACCTGATTCTCTGGCTGCTAAAGTGGAAGAAGCAGTGCAGGTGCTCAATATCTCCAAGACAAAACTATCATCCAACCAAGACACAATCAGCAGCTACTTATCAGCTGAGGTTGCAGTCAATTGA | 3399 | 42.72 | MRLFSFLIFPLMAVFFPIKVIFCDFPARVLPLERVFPLTHDVEIEALRVRDRVRHSRILQGVVDFSVEGSSDPYLAGLYFTKVKLGSPPREFTVQIDTGSDILWITCNYCNGCPRSSGLGIQLNFFDATSSSTASLIPCSDPMCNSAFQSTATQCLPQSNQCGYMFQYGDGSGTSGYYVSESMYFDMVLGRSMIANSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGDFSVISQLSVRGITPKIFSHCLKGEGNGGGILVLGEILEPGIVYSPLVPSQPHYNLYLQSISVNGQMLPIDPSVFATSNTRGTIVDSGTTLAYLVEEAYIPFVSAITASVSQSVTPTISKGNQCYLVSTSVDGIFPPVSLNFAGSASMVLKPEEYLVHLGFYEGAALWCIGFQKVEEGVTILGDLVMKDKIFVYDLAHRRIGWANYDCSQAVNVSVTSGKNKFVNAGQLNVSSSTRDKLLQLLTMEAIALLICIILISFCVCGKMAVVSQTVIALPASLYVGDLHPDTTGEELLNAFSEFKSIASVRICRDSSTGRSLSYGYVNFISPQEAIQAMEAMNHTVLKGKVIRLMWSQRESDGRRSGIGNLFVKNLSDSINSLVLEDIFKKFGNVVSCKVAMSDDGKSRGYGFVQFECEDSANAAIEKLNGSTVEDKQIYVGKFVKRSDRVLANLDAKYTNLYVKNLDPEVREELLMEKFSEFGKVSSLIISKDGNGMSRGFGFINFDNCDDAKRALEALNGSQLGSKVIYIARAQKKLEREHILRRHFEEKRMEQILKFKDSNVYVKNIDDDATDEELREFFSKCGTITSSKLMRDDKGISKGFGFVCYSNSEEANKAVNTLHGCMFHRKPLYVAIAQRKEDRQMQLKLQFSQRFAGLAGSPSTILFPGGYPPYYYTAPEVIPQAPSHPGLMFQPLGLKPGWRANTFATPTRPGFQPSPVPVFPNAPRQPRQNRGKMNGQVLSQNRAQAVPYVQNSRETNQPVVLAKASGNQQWNGPVKYMPNARPRETNKSSAASSAAIFNAVGDIYQGSQMLSSMVAASPEQQKQTLGEHLYPLVQKHKPELASKITGMLLEMDNSELLLLLESPDSLAAKVEEAVQVLNISKTKLSSNQDTISSYLSAEVAVN | 1132 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3298268 | 3309038 | + | evm.model.ptg000018l.267 | HCH11g0348 | 553815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0348 | 1132 | SMART | poly_2 | 1047 | 1110 | IPR002004 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | CDD | pepsin_A_like_plant | 79 | 437 | IPR034161 | - | |
HCH11g0348 | 1132 | Pfam | Poly-adenylate binding protein, unique domain | 1044 | 1107 | IPR002004 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Pfam | Xylanase inhibitor C-terminal | 282 | 433 | IPR032799 | - | |
HCH11g0348 | 1132 | Gene3D | - | 671 | 772 | IPR012677 | - | |
HCH11g0348 | 1132 | SUPERFAMILY | RNA-binding domain, RBD | 680 | 771 | IPR035979 | GO:0003676(InterPro) | |
HCH11g0348 | 1132 | Gene3D | - | 594 | 670 | IPR012677 | - | |
HCH11g0348 | 1132 | Gene3D | Acid Proteases | 267 | 444 | IPR021109 | - | |
HCH11g0348 | 1132 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 788 | 865 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | MobiDBLite | consensus disorder prediction | 937 | 962 | - | - | |
HCH11g0348 | 1132 | FunFam | Polyadenylate-binding protein | 595 | 675 | - | - | |
HCH11g0348 | 1132 | Gene3D | - | 773 | 874 | IPR012677 | - | |
HCH11g0348 | 1132 | FunFam | Aspartic proteinase-like protein 2 | 62 | 265 | - | - | |
HCH11g0348 | 1132 | FunFam | Polyadenylate-binding protein | 1034 | 1119 | - | - | |
HCH11g0348 | 1132 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 594 | 671 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Pfam | RNA recognition motif | 790 | 858 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Pfam | RNA recognition motif | 596 | 664 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Pfam | RNA recognition motif | 508 | 578 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Pfam | RNA recognition motif | 687 | 755 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | SUPERFAMILY | Acid proteases | 74 | 441 | IPR021109 | - | |
HCH11g0348 | 1132 | Gene3D | - | 1034 | 1112 | - | - | |
HCH11g0348 | 1132 | SMART | rrm1_1 | 507 | 580 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm1_1 | 686 | 758 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm1_1 | 595 | 667 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm1_1 | 789 | 861 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | CDD | RRM4_I_PABPs | 788 | 865 | - | - | |
HCH11g0348 | 1132 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 1035 | 1112 | IPR002004 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | ProSiteProfiles | Peptidase family A1 domain profile. | 79 | 433 | IPR033121 | - | |
HCH11g0348 | 1132 | SUPERFAMILY | PABC (PABP) domain | 988 | 1113 | IPR036053 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Gene3D | Acid Proteases | 62 | 265 | IPR021109 | - | |
HCH11g0348 | 1132 | SUPERFAMILY | RNA-binding domain, RBD | 785 | 882 | IPR035979 | GO:0003676(InterPro) | |
HCH11g0348 | 1132 | PRINTS | Pepsin (A1) aspartic protease family signature | 312 | 323 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
HCH11g0348 | 1132 | PRINTS | Pepsin (A1) aspartic protease family signature | 409 | 424 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
HCH11g0348 | 1132 | PRINTS | Pepsin (A1) aspartic protease family signature | 85 | 105 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
HCH11g0348 | 1132 | FunFam | Aspartic proteinase-like protein 2 | 266 | 444 | - | - | |
HCH11g0348 | 1132 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 506 | 584 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | PANTHER | RNA BINDING PROTEIN | 499 | 688 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
HCH11g0348 | 1132 | Gene3D | - | 499 | 593 | IPR012677 | - | |
HCH11g0348 | 1132 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 685 | 762 | IPR000504 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | Pfam | Xylanase inhibitor N-terminal | 79 | 264 | IPR032861 | - | |
HCH11g0348 | 1132 | CDD | RRM2_I_PABPs | 592 | 668 | IPR045305 | - | |
HCH11g0348 | 1132 | FunFam | Polyadenylate-binding protein | 771 | 879 | - | - | |
HCH11g0348 | 1132 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 506 | 1108 | IPR006515 | GO:0003723(InterPro) | |
HCH11g0348 | 1132 | SUPERFAMILY | RNA-binding domain, RBD | 507 | 673 | IPR035979 | GO:0003676(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm2_1 | 507 | 580 | IPR003954 | GO:0003676(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm2_1 | 686 | 758 | IPR003954 | GO:0003676(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm2_1 | 789 | 861 | IPR003954 | GO:0003676(InterPro) | |
HCH11g0348 | 1132 | SMART | rrm2_1 | 595 | 667 | IPR003954 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0348 | HCH-Chr11:3298268 | HCH7g0657 | HCH-Chr7:6785847 | 2.80E-121 | dispersed | |
HCH13g0266 | HCH-Chr13:1762899 | HCH11g0348 | HCH-Chr11:3298268 | 2.00E-124 | transposed | |
HCH6g0997 | HCH-Chr6:44722518 | HCH11g0348 | HCH-Chr11:3298268 | 3.60E-09 | transposed | |
HCH6g1761 | HCH-Chr6:50060269 | HCH11g0348 | HCH-Chr11:3298268 | 4.70E-10 | transposed | |
HCH7g1138 | HCH-Chr7:44193660 | HCH11g0348 | HCH-Chr11:3298268 | 1.50E-06 | transposed | |
HCH8g0324 | HCH-Chr8:26464547 | HCH11g0348 | HCH-Chr11:3298268 | 1.40E-90 | transposed | |
HCH9g0339 | HCH-Chr9:2103910 | HCH11g0348 | HCH-Chr11:3298268 | 1.60E-09 | transposed | |
HCH11g0348 | HCH-Chr11:3298268 | HCH2g1228 | HCH-Chr2:54651385 | 6.90E-173 | wgd | |
HCH11g0348 | HCH-Chr11:3298268 | HCH3g1133 | HCH-Chr3:36346814 | 1.60E-166 | wgd | |
HCH11g0348 | HCH-Chr11:3298268 | HCH9g0537 | HCH-Chr9:3465994 | 4.20E-178 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0348 | K13126 | - | csv:101203793 | 933.324 |