Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0348 ATGAGGCTTTTTTCTTTCTTGATCTTCCCTTTAATGGCCGTGTTTTTTCCCATTAAAGTGATTTTCTGTGACTTTCCTGCCAGAGTTCTTCCTCTGGAGAGAGTTTTTCCTTTAACTCATGATGTAGAAATCGAAGCTCTAAGAGTTAGAGACAGGGTCAGACATTCTAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCTGATCCTTACCTTGCCGGGCTTTATTTTACTAAAGTCAAACTGGGCAGTCCCCCGAGGGAATTTACCGTGCAGATCGATACGGGTAGTGATATATTGTGGATCACCTGCAATTATTGCAATGGCTGCCCACGATCAAGTGGACTCGGAATTCAACTAAATTTCTTTGATGCTACCAGCTCATCAACTGCTTCTCTCATTCCTTGCTCTGACCCAATGTGCAATTCTGCGTTCCAATCAACTGCAACTCAATGTTTGCCTCAGAGTAATCAATGCGGTTACATGTTTCAATATGGTGACGGAAGTGGAACATCCGGTTATTATGTATCTGAGTCGATGTATTTTGACATGGTTCTGGGGCGTTCTATGATTGCCAACTCTTCAGCTACCATTGTTTTCGGTTGTAGTACCTATCAGTCTGGGGACTTGACTAAGACAGACAAAGCAGTAGATGGCATTTTCGGATTTGGCCCTGGGGATTTTTCTGTCATATCACAGTTGTCAGTCCGAGGGATAACCCCTAAAATATTTTCGCATTGTTTAAAAGGAGAAGGCAATGGTGGTGGTATATTGGTTCTTGGTGAGATTTTGGAGCCTGGCATTGTTTATAGCCCACTCGTACCCTCTCAGCCCCACTATAACTTATATCTGCAAAGCATTTCTGTCAACGGTCAAATGTTGCCAATCGATCCATCTGTATTTGCAACGTCAAACACTCGAGGCACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTGGAAGAAGCTTATATTCCATTTGTCAGTGCTATTACTGCTTCTGTTTCCCAATCTGTGACTCCTACCATTTCAAAGGGAAATCAGTGTTATCTAGTATCCACCAGTGTAGATGGGATATTTCCTCCGGTCAGCCTAAACTTTGCCGGCAGTGCGTCCATGGTGTTAAAACCCGAAGAGTATCTCGTTCATCTTGGCTTTTATGAGGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTGAGGAAGGAGTTACAATTTTAGGAGATCTTGTGATGAAAGATAAGATTTTCGTCTACGATTTAGCTCATCGGAGAATCGGGTGGGCCAACTACGATTGTTCACAGGCTGTAAATGTATCCGTAACTTCCGGGAAGAACAAGTTCGTCAATGCGGGCCAGCTGAACGTGAGCAGCTCGACACGAGATAAGCTCCTTCAGTTGCTGACTATGGAAGCCATAGCTCTCTTGATATGTATCATTTTAATTTCTTTCTGTGTGTGTGGAAAAATGGCGGTTGTTTCTCAGACTGTTATTGCGTTACCGGCTTCTCTCTACGTCGGCGATCTTCATCCCGATACCACCGGCGAAGAATTGCTTAATGCTTTCTCTGAATTCAAAAGCATTGCTTCTGTTCGTATTTGTAGAGATTCTTCCACTGGCCGTTCTCTCTCTTACGGCTATGTCAATTTTATCTCTCCTCAAGAAGCAATCCAAGCTATGGAGGCAATGAATCATACGGTGTTGAAAGGTAAAGTGATAAGACTTATGTGGTCCCAGCGCGAATCTGATGGCAGAAGAAGTGGAATTGGAAATCTGTTTGTTAAGAACTTGAGTGATTCAATCAATAGTTTGGTACTTGAAGACATATTCAAGAAATTTGGGAATGTCGTGTCCTGCAAAGTTGCTATGTCTGATGATGGAAAAAGTAGAGGATATGGCTTTGTTCAATTTGAGTGTGAGGATTCAGCAAATGCTGCAATTGAGAAACTAAATGGTTCTACTGTTGAGGACAAGCAGATATATGTTGGAAAGTTTGTCAAAAGAAGCGATCGAGTTTTGGCCAATCTTGATGCTAAATATACAAATCTGTATGTGAAAAATCTGGATCCAGAAGTTAGGGAAGAGCTTCTGATGGAAAAGTTCTCTGAGTTTGGAAAAGTTTCCAGCCTGATTATTTCAAAGGATGGGAATGGAATGTCAAGGGGTTTTGGCTTTATAAATTTTGACAACTGTGATGATGCTAAACGGGCATTGGAAGCGCTGAATGGATCACAACTTGGCTCAAAGGTTATCTACATTGCAAGGGCACAAAAGAAGTTAGAACGTGAACATATATTACGTCGACATTTTGAAGAGAAACGTATGGAGCAAATATTGAAATTCAAGGACTCAAATGTGTATGTGAAGAACATCGACGATGATGCTACTGATGAAGAGCTCAGAGAATTTTTCAGTAAGTGTGGCACAATCACTTCGTCCAAACTTATGCGAGATGACAAGGGAATAAGCAAAGGGTTTGGATTTGTTTGTTACTCTAATTCTGAGGAAGCTAATAAAGCTGTGAACACTTTGCATGGATGTATGTTTCACCGGAAGCCACTCTATGTGGCTATAGCACAGAGGAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTTCACAACGATTTGCAGGGCTAGCCGGATCACCATCAACTATTCTTTTTCCTGGTGGGTATCCACCTTATTACTACACAGCACCAGAAGTTATTCCACAAGCGCCATCGCATCCAGGCCTGATGTTTCAGCCTTTAGGATTGAAGCCTGGATGGAGAGCTAATACCTTTGCAACTCCAACTAGACCTGGCTTTCAACCTTCACCAGTACCTGTTTTTCCAAATGCTCCTAGACAACCCAGGCAAAACAGAGGCAAAATGAATGGACAGGTGCTGTCTCAAAATCGTGCCCAGGCTGTCCCCTATGTGCAAAATTCACGAGAAACCAACCAACCAGTAGTTTTGGCAAAAGCTTCCGGCAATCAGCAGTGGAATGGACCTGTTAAGTACATGCCAAATGCACGTCCACGTGAAACAAATAAATCTTCTGCAGCGTCATCTGCTGCTATTTTTAACGCTGTTGGAGACATCTATCAGGGATCACAAATGTTGAGTAGTATGGTTGCTGCCTCTCCTGAACAACAGAAACAAACGCTTGGCGAGCATCTCTACCCACTGGTTCAGAAACACAAGCCAGAGCTTGCTTCCAAAATTACAGGGATGCTTCTGGAGATGGACAACTCAGAATTGCTGCTTCTGTTGGAGTCACCTGATTCTCTGGCTGCTAAAGTGGAAGAAGCAGTGCAGGTGCTCAATATCTCCAAGACAAAACTATCATCCAACCAAGACACAATCAGCAGCTACTTATCAGCTGAGGTTGCAGTCAATTGA 3399 42.72 MRLFSFLIFPLMAVFFPIKVIFCDFPARVLPLERVFPLTHDVEIEALRVRDRVRHSRILQGVVDFSVEGSSDPYLAGLYFTKVKLGSPPREFTVQIDTGSDILWITCNYCNGCPRSSGLGIQLNFFDATSSSTASLIPCSDPMCNSAFQSTATQCLPQSNQCGYMFQYGDGSGTSGYYVSESMYFDMVLGRSMIANSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGDFSVISQLSVRGITPKIFSHCLKGEGNGGGILVLGEILEPGIVYSPLVPSQPHYNLYLQSISVNGQMLPIDPSVFATSNTRGTIVDSGTTLAYLVEEAYIPFVSAITASVSQSVTPTISKGNQCYLVSTSVDGIFPPVSLNFAGSASMVLKPEEYLVHLGFYEGAALWCIGFQKVEEGVTILGDLVMKDKIFVYDLAHRRIGWANYDCSQAVNVSVTSGKNKFVNAGQLNVSSSTRDKLLQLLTMEAIALLICIILISFCVCGKMAVVSQTVIALPASLYVGDLHPDTTGEELLNAFSEFKSIASVRICRDSSTGRSLSYGYVNFISPQEAIQAMEAMNHTVLKGKVIRLMWSQRESDGRRSGIGNLFVKNLSDSINSLVLEDIFKKFGNVVSCKVAMSDDGKSRGYGFVQFECEDSANAAIEKLNGSTVEDKQIYVGKFVKRSDRVLANLDAKYTNLYVKNLDPEVREELLMEKFSEFGKVSSLIISKDGNGMSRGFGFINFDNCDDAKRALEALNGSQLGSKVIYIARAQKKLEREHILRRHFEEKRMEQILKFKDSNVYVKNIDDDATDEELREFFSKCGTITSSKLMRDDKGISKGFGFVCYSNSEEANKAVNTLHGCMFHRKPLYVAIAQRKEDRQMQLKLQFSQRFAGLAGSPSTILFPGGYPPYYYTAPEVIPQAPSHPGLMFQPLGLKPGWRANTFATPTRPGFQPSPVPVFPNAPRQPRQNRGKMNGQVLSQNRAQAVPYVQNSRETNQPVVLAKASGNQQWNGPVKYMPNARPRETNKSSAASSAAIFNAVGDIYQGSQMLSSMVAASPEQQKQTLGEHLYPLVQKHKPELASKITGMLLEMDNSELLLLLESPDSLAAKVEEAVQVLNISKTKLSSNQDTISSYLSAEVAVN 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3298268 3309038 + evm.model.ptg000018l.267 HCH11g0348 553815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0348 1132 SMART poly_2 1047 1110 IPR002004 GO:0003723(InterPro)
HCH11g0348 1132 CDD pepsin_A_like_plant 79 437 IPR034161 -
HCH11g0348 1132 Pfam Poly-adenylate binding protein, unique domain 1044 1107 IPR002004 GO:0003723(InterPro)
HCH11g0348 1132 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
HCH11g0348 1132 Gene3D - 671 772 IPR012677 -
HCH11g0348 1132 SUPERFAMILY RNA-binding domain, RBD 680 771 IPR035979 GO:0003676(InterPro)
HCH11g0348 1132 Gene3D - 594 670 IPR012677 -
HCH11g0348 1132 Gene3D Acid Proteases 267 444 IPR021109 -
HCH11g0348 1132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 788 865 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 MobiDBLite consensus disorder prediction 937 962 - -
HCH11g0348 1132 FunFam Polyadenylate-binding protein 595 675 - -
HCH11g0348 1132 Gene3D - 773 874 IPR012677 -
HCH11g0348 1132 FunFam Aspartic proteinase-like protein 2 62 265 - -
HCH11g0348 1132 FunFam Polyadenylate-binding protein 1034 1119 - -
HCH11g0348 1132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 594 671 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 Pfam RNA recognition motif 790 858 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 Pfam RNA recognition motif 596 664 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 Pfam RNA recognition motif 508 578 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 Pfam RNA recognition motif 687 755 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 SUPERFAMILY Acid proteases 74 441 IPR021109 -
HCH11g0348 1132 Gene3D - 1034 1112 - -
HCH11g0348 1132 SMART rrm1_1 507 580 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 SMART rrm1_1 686 758 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 SMART rrm1_1 595 667 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 SMART rrm1_1 789 861 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 CDD RRM4_I_PABPs 788 865 - -
HCH11g0348 1132 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1035 1112 IPR002004 GO:0003723(InterPro)
HCH11g0348 1132 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
HCH11g0348 1132 SUPERFAMILY PABC (PABP) domain 988 1113 IPR036053 GO:0003723(InterPro)
HCH11g0348 1132 Gene3D Acid Proteases 62 265 IPR021109 -
HCH11g0348 1132 SUPERFAMILY RNA-binding domain, RBD 785 882 IPR035979 GO:0003676(InterPro)
HCH11g0348 1132 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
HCH11g0348 1132 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
HCH11g0348 1132 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
HCH11g0348 1132 FunFam Aspartic proteinase-like protein 2 266 444 - -
HCH11g0348 1132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 584 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 PANTHER RNA BINDING PROTEIN 499 688 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
HCH11g0348 1132 Gene3D - 499 593 IPR012677 -
HCH11g0348 1132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 685 762 IPR000504 GO:0003723(InterPro)
HCH11g0348 1132 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
HCH11g0348 1132 CDD RRM2_I_PABPs 592 668 IPR045305 -
HCH11g0348 1132 FunFam Polyadenylate-binding protein 771 879 - -
HCH11g0348 1132 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 506 1108 IPR006515 GO:0003723(InterPro)
HCH11g0348 1132 SUPERFAMILY RNA-binding domain, RBD 507 673 IPR035979 GO:0003676(InterPro)
HCH11g0348 1132 SMART rrm2_1 507 580 IPR003954 GO:0003676(InterPro)
HCH11g0348 1132 SMART rrm2_1 686 758 IPR003954 GO:0003676(InterPro)
HCH11g0348 1132 SMART rrm2_1 789 861 IPR003954 GO:0003676(InterPro)
HCH11g0348 1132 SMART rrm2_1 595 667 IPR003954 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0348 HCH-Chr11:3298268 HCH7g0657 HCH-Chr7:6785847 2.80E-121 dispersed
HCH13g0266 HCH-Chr13:1762899 HCH11g0348 HCH-Chr11:3298268 2.00E-124 transposed
HCH6g0997 HCH-Chr6:44722518 HCH11g0348 HCH-Chr11:3298268 3.60E-09 transposed
HCH6g1761 HCH-Chr6:50060269 HCH11g0348 HCH-Chr11:3298268 4.70E-10 transposed
HCH7g1138 HCH-Chr7:44193660 HCH11g0348 HCH-Chr11:3298268 1.50E-06 transposed
HCH8g0324 HCH-Chr8:26464547 HCH11g0348 HCH-Chr11:3298268 1.40E-90 transposed
HCH9g0339 HCH-Chr9:2103910 HCH11g0348 HCH-Chr11:3298268 1.60E-09 transposed
HCH11g0348 HCH-Chr11:3298268 HCH2g1228 HCH-Chr2:54651385 6.90E-173 wgd
HCH11g0348 HCH-Chr11:3298268 HCH3g1133 HCH-Chr3:36346814 1.60E-166 wgd
HCH11g0348 HCH-Chr11:3298268 HCH9g0537 HCH-Chr9:3465994 4.20E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0348 K13126 - csv:101203793 933.324