Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0350 ATGATAACTATGAAGAATCAAATATCATGCCTGTTTGAAAGCTTTTTTCTCTTTCTTCTGTTCTTAAGTCCCTGCTGCTATTCTCAAAAGACCTGCCCAAGCTGTGGCTCCATTGAAGTTCCATATCCTCTAAGTACCGGTCCCAACTGTGGTGACTCGGACTATACGCTTCGCTGTGATTCTCACTCACAGAAGCTGTACTTCGATGCCCTCAATGGAAGTTCATATCTTGTACTCAAAATCAATGCTTTGAGTCAACGCATGGTGGTTCAACCGTCTCCATGGGTTCCTGGCACCTGTATTACTCAAGATATGATCGTCAGTGAAGGCCTGTGGTTAAACCAATCCCTCCCTTTTAACATCACTTCATCAAATACTGTCTTCCTCCTGAACTGTTCTCCTCGCCTGCTCGTTTCCCCTCTCAACTGCACCCTTTCTAGTCTCTGTCACCGTTACTTGGAAAGCTCAGGACGTGTTGACAAAGGAAGAGCGGTTGAATGTGCAAGTGTTGTTGACCCTTGTTGTACTTTCATCCCTGGTGGGATGCCCTCAGCATATAAAATAAGGCTTCATAATTCAGGATGTAGAGCATTCGGGAGCATCCTTCATCTGGATGTGGAAAATCCTGCAAATCAATGGGAGGAAGGTTTAGAAATTCAATGGGCATCTCCACCTGAAACACTTTGTAGAACTCAATTTGATTGCACTGGAGCTTCAGATTGTCTGCCTTCTGGTACTGATGGCCATTCTCGTTGCCTTTGCAAAAGGTGCTACCGTTGGGACCATATTCTTGGAACGTGCTTGAGAACGAAGCGGAACAGCATCGTTGGACTCCGCATAAAGCTCTCAGTATGTCTGACTTTAGTTTTCATCCTGGCGGCAGTTATAACTCTAATTAAAGTCAGGAAGTCCAGAGCTTCTGATAAGCAGGACAAGCTCTCTAAAGAAAGAGAAGATATGCTGAATTCAAGAAATGGTGGTAGGCCAGCTAGGATGTTTCATCTGAAAGAAATGAGGAAAGCGACAAACGATTTTTCGAAAGACCGGATTCTCGGGAGTGGTGGCTTTGGAGAGGTTTACAAAGGTGAACTTCAAGATGGGACTGTTGTAGCTGTGAAGTCAGCTAAAGTGGGTAACATAAAAAGCACCCAACAAATACTCAATGAAGTTGGAATACTATCTCAGGTAAACCACAAGAATCTTGTGAGACTTTTAGGTTGCTGCGTGGAAACGGAGCAACCGTTGATGATCTATGAATACATTTCGAACGGGACCCTCCACGACCATTTACACGGTAAGTTTTCCACTTTCCTTGACTGGAAAACAAGGCTGAGAATTGCTTTACAAACTGCAGAAGCATTAGCTTATTTGCATTCAGCTGCATACCATCCTATCTATCACAGAGATGTCAAGTCAACAAATATACTCCTAGATGATGACTTCAATGCAAAAGTTGCTGATTTTGGTCTTTCTAGATTAGCTTTGCCAGGATTGAGCCATGTTTCAACTTGCGCTCAGGGTACATTAGGTTACTTAGACCCCGAATACTATCGGAATTACCAGTTAACAGATAAAAGTGACGTTTATAGTTACGGAGTTGTCTTGCTCGAGCTTTTAACCTCACAGAAAGCCATAGATTTCACAAGAGATGAAGATGGTGTGAATCTAGCAATCTATGTGATGCAACAAGTTGAAAAAGGTGCATTCATCGAAGCCGTTGATAAACATCTGCTGGGCAATGATCCTTCTAGCAATGTAGTGATCAGTGTGAAGCACTTCTTGGATCTTGCACTTGCTTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTGCATGAAAGATGTAGTCCAAGAACTTGAATACATCACTCTGATATTGGATAATCCAGAAACAAGAGTCACTGAAGAGGGTAAGTCTAATGATCACGAATTCGGCGAAAAACGCCTTGAAGTTCTCGAGTGTTAG 1962 42.97 MITMKNQISCLFESFFLFLLFLSPCCYSQKTCPSCGSIEVPYPLSTGPNCGDSDYTLRCDSHSQKLYFDALNGSSYLVLKINALSQRMVVQPSPWVPGTCITQDMIVSEGLWLNQSLPFNITSSNTVFLLNCSPRLLVSPLNCTLSSLCHRYLESSGRVDKGRAVECASVVDPCCTFIPGGMPSAYKIRLHNSGCRAFGSILHLDVENPANQWEEGLEIQWASPPETLCRTQFDCTGASDCLPSGTDGHSRCLCKRCYRWDHILGTCLRTKRNSIVGLRIKLSVCLTLVFILAAVITLIKVRKSRASDKQDKLSKEREDMLNSRNGGRPARMFHLKEMRKATNDFSKDRILGSGGFGEVYKGELQDGTVVAVKSAKVGNIKSTQQILNEVGILSQVNHKNLVRLLGCCVETEQPLMIYEYISNGTLHDHLHGKFSTFLDWKTRLRIALQTAEALAYLHSAAYHPIYHRDVKSTNILLDDDFNAKVADFGLSRLALPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFTRDEDGVNLAIYVMQQVEKGAFIEAVDKHLLGNDPSSNVVISVKHFLDLALACLREKKVERPCMKDVVQELEYITLILDNPETRVTEEGKSNDHEFGEKRLEVLEC 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3330514 3332475 - evm.model.ptg000018l.265 HCH11g0350 553817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0350 653 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247(InterPro)
HCH11g0350 653 Pfam Protein kinase domain 346 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0350 653 Gene3D Phosphorylase Kinase; domain 1 314 420 - -
HCH11g0350 653 SMART serkin_6 345 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0350 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 622 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
HCH11g0350 653 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524(InterPro)
HCH11g0350 653 FunFam Wall-associated receptor kinase-like 20 421 631 - -
HCH11g0350 653 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0350 653 SUPERFAMILY Protein kinase-like (PK-like) 323 622 IPR011009 -
HCH11g0350 653 FunFam Wall-associated receptor kinase-like 20 307 420 - -
HCH11g0350 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0350 653 CDD STKc_IRAK 351 619 - -
HCH11g0350 653 Gene3D Transferase(Phosphotransferase) domain 1 421 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0330 HCH-Chr10:2684514 HCH11g0350 HCH-Chr11:3330514 6.50E-48 dispersed
HCH11g0350 HCH-Chr11:3330514 HCH13g0508 HCH-Chr13:3565441 1.30E-163 dispersed
HCH9g0699 HCH-Chr9:4661214 HCH11g0350 HCH-Chr11:3330514 1.90E-52 dispersed
HCH10g0898 HCH-Chr10:11421756 HCH11g0350 HCH-Chr11:3330514 6.70E-34 transposed
HCH1g0749 HCH-Chr1:56295597 HCH11g0350 HCH-Chr11:3330514 3.50E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81048 PF00069 Pkinase 2.90E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0350 - - - 0.0