Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0363 ATGATGATATTGAAGAAGAAGAACAACAACAACCAAATGAAGAATTCTTGTTCTTCTTTTTTTGCTTTCTTTCTCTCTCTTACTCTCTTAACTTCTCCTTCTTATTCTCTCTCTTCATTTTCTCAATCAAATGACACTTTTGCCCTCGACCGCTTCCGTCTCCAAACCGATTTACATGGCAACCTCCGGTCCAACTGGACCGGCTCCGACGCCTGCGCTGCTGCCTGGCATGGTGTCCACTGCTCTTTCGGCCGCCGTGTAATTTCTCTCTCTCTTCCTTCGCTCAATCTCCGAGGACCGGTTGACGCTCTCTCGCCGCTTGATCAGCTCCGTCTCCTCGACCTCCATGATAACCGATTGAACGGCACCGTCTCGCATCTCAATAACTGCACTAACTTGAAACTCCTCTATCTCTCCGGCAACGATTTCTCCGGAGAGATTTCGCCGGAAATCTCGTCTCTTAAACGACTTCTCCGTCTTGATTTCTCAGATAACAACATTCACGGCGAGATCCCGGAGGAAATCTCGCGGTTGAATCGCCTCCTCACGCTTCGTTTACAGAACAATTTACTCTCCGGAAAGATTCCTGATTTCTCTTCCGCGCTCGTCAACCTCACGGAATTGAATTTAACGAATAACGAATTGTACGGACCGTTGCCGGAGGGGTTTCTAAGGAAGTTCGGTGAGAAGAGTTTTTTAGGAAACGAAGGGATTTGTGGATCGAATCCGCTGCCGGTTTGTTCTTTTACAGATCCCGGCAGAACGGTGCCGTCTAACCCGAGTTCTTTCCTGCAAAATCCAATAATTGTTCCTAATAACAGAGAATTATCACGTAATAAAACTAAAACCCTAAGTCCTGGTGTTATTGTAGCAATTGTGATTGCTAATTGTGTGGCATTGTTGGTAATTAGCTCCTGTGTAGTGGCGTATTTCTGCGGTCGTGATCGGAGATCGAATTCGATATCGGGGAGTGAGAATGGGAATGGGAAGAGGAGGAAGAGTGGGAGTAGCTATGGGAGTGAGAAGAAGGTTTATGCTAATGGAACTGGTGGAGATAGTGATGGTACTAATGCTACTGATAGGAGCAAGTTGGTGTTTTTCGATTGGAAGAAGCAGTTTGAGCTTGAGGATTTGCTTAGGGCATCGGCGGAGATGCTCGGTAAAGGGAGTTTAGGGACGGTTTATCGGGCGGTGCTCGATGACGGATGTACCGTTGCGGTTAAGAGGTTGAAGGATGCAAATCCATGTCCTAGGAAGGATTTTGAGCAGTATATGGATGTGATTGGGAAGATTAAGCATTTGAATATTGTTAGGTTGAGAGCTTTTTACTTTGCTAAAGAGGAAAAGCTTCTTGTTTATGATTATCTTCCTAATGGAAGCTTGCATTATCTGCTTCATGGCAATCGCGGTCCAGGAAGAATTCCGTTGGATTGGACGACAAGAATCAGTTTGGTTTTGGGAGCAGCTCGTGGGCTAGCTAAGATTCATGAAGAATATAGTGCATCAAAAATCCCTCATGGAAATGTAAAATCATCAAACGTTCTTCTTGACAAGAATGGAGTAGCTTGCATTTCGGATTTCGGGCTCTCTCTTCTTCTCAACCCCGTCCATGCCATTGCTAGACTTGGAGGATACAAAGCTCCTGAACAAGAAGAAACCAAACGACTCTCTCAAAAGGCCGACGTTTACAGCTTCGGCGTCCTGTTGCTAGAAGTCCTGACCGGCCGAGCACCGTCGCTCTATCCGTCTCCTTCACAGCCCCGAATCGACGACGAGGAGCAGGCGGTCGATTTGCCGAAATGGGTTCGATCGGTAGTGAAGGAGGAGTGGACGGCAGAGGTGTTTGATCCAGAATTGTTGAGGTACAAGAACATTGAGGAGGAGCTAGTGTCAATGCTTCATGTTGGCTTGGCATGCGTCTTGCCGCAGCCCGAGAAGAGACCGACGATGGCGGAAGTGGCGAAGATGATTGAAGAGATCAGGGTGGAGCAGTCTCCTCTTGGAGAAGAATATGATGAATCTCGCAATTCACTCTCTCCTTCCCTTGCCACCACTGAAGATGGAATGGTTTAG 2073 46.99 MMILKKKNNNNQMKNSCSSFFAFFLSLTLLTSPSYSLSSFSQSNDTFALDRFRLQTDLHGNLRSNWTGSDACAAAWHGVHCSFGRRVISLSLPSLNLRGPVDALSPLDQLRLLDLHDNRLNGTVSHLNNCTNLKLLYLSGNDFSGEISPEISSLKRLLRLDFSDNNIHGEIPEEISRLNRLLTLRLQNNLLSGKIPDFSSALVNLTELNLTNNELYGPLPEGFLRKFGEKSFLGNEGICGSNPLPVCSFTDPGRTVPSNPSSFLQNPIIVPNNRELSRNKTKTLSPGVIVAIVIANCVALLVISSCVVAYFCGRDRRSNSISGSENGNGKRRKSGSSYGSEKKVYANGTGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKIKHLNIVRLRAFYFAKEEKLLVYDYLPNGSLHYLLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHEEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQEETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSQPRIDDEEQAVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEEIRVEQSPLGEEYDESRNSLSPSLATTEDGMV 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3408610 3410771 - evm.model.ptg000018l.252 HCH11g0363 553830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0363 690 CDD STKc_IRAK 386 660 - -
HCH11g0363 690 SUPERFAMILY L domain-like 43 224 - -
HCH11g0363 690 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 456 670 - -
HCH11g0363 690 MobiDBLite consensus disorder prediction 321 356 - -
HCH11g0363 690 Gene3D Ribonuclease Inhibitor 45 153 IPR032675 -
HCH11g0363 690 FunFam pollen receptor-like kinase 1 351 455 - -
HCH11g0363 690 FunFam Nuclear pore complex protein NUP107 42 197 - -
HCH11g0363 690 Gene3D Ribonuclease Inhibitor 154 247 IPR032675 -
HCH11g0363 690 Gene3D Transferase(Phosphotransferase) domain 1 456 679 - -
HCH11g0363 690 SUPERFAMILY Protein kinase-like (PK-like) 384 658 IPR011009 -
HCH11g0363 690 Gene3D Phosphorylase Kinase; domain 1 353 455 - -
HCH11g0363 690 Pfam Protein tyrosine and serine/threonine kinase 384 655 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0363 690 PANTHER OS05G0588300 PROTEIN 22 666 IPR050994 -
HCH11g0363 690 ProSiteProfiles Protein kinase domain profile. 380 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0363 690 MobiDBLite consensus disorder prediction 665 690 - -
HCH11g0363 690 Pfam Leucine Rich Repeat 132 154 IPR001611 GO:0005515(InterPro)
HCH11g0363 690 Pfam Leucine Rich Repeat 157 178 IPR001611 GO:0005515(InterPro)
HCH11g0363 690 Pfam Leucine Rich Repeat 204 223 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0363 HCH-Chr11:3408610 HCH2g0970 HCH-Chr2:53026899 1.60E-92 dispersed
HCH1g0754 HCH-Chr1:56359305 HCH11g0363 HCH-Chr11:3408610 2.80E-36 dispersed
HCH12g1245 HCH-Chr12:12400651 HCH11g0363 HCH-Chr11:3408610 1.60E-48 transposed
HCH1g0752 HCH-Chr1:56335050 HCH11g0363 HCH-Chr11:3408610 1.40E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81049 PF00069 Pkinase 9.20E-32 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0363 - - - 0.0