Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0370 | ATGGAGTTTTGGGGTGTTGAGGTTAAAGTTGGAGAACCCCTCTCAGTGAGTCCTGGAGAGGAGAAGATATTGCATCTGTCACAGGCTTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTATCTATATGTTAAGGTCGGCAATCAAAAGCTTGTTTTAGGATCGCTCTCCTCAGAGAAATTCCCTCAAGTCTCTTTTGATCTGGTGTTTGACAAGGAATTTGAGCTATCCCATAATTGGAAAAATGGAAGTGTCTACTTCACGGGATATAAATCTATCGTTCCAGACGAATATCCTTTTACTGAATTATTTTCTTATTTGAGCTATACTGATTCTGATGAGGATCTTCCGCTAGCTATCACTGACAACGGAAAGCCCGAGACTCAACCTAAGGAAGATGCAAAAGCTGATGTTTCTGGGACTAAACGAAAAGTGAAGATTGTAGAACCAAACAAAGGTAACTCTAATTCAGTTATTGACAGTAAGAAGGATGACGATTCTTCTGATGAAGATGATGAAGAGAGCACAGATGATGAGAATGCAATTGGAGGTGAAGAAGATGATAGTGATGATGAAAATGAGCTTTTTGGTGAAGATAGTGAAGAAACTGAAAATGAGGATTCTGATGACAGTTCAGAGGATGAGCAGACACCGAAAAAGGCTGAAGCAAGCAAGAAGAGACCTTTAGAATCTGCTAACAAGACACCGGTTCCTGATAAGAAGGCAAAGCTGGTTACTCCTCAGAAAACTGATGGGAAGAAAGGTGTTGTCCATATAGCTACTCCTCACCCTTCAAAGAAAGCTGGGAAAACACCTGCTACTAACGACCAACCTAAGCAGCAAACTCCCAAATCAGCTGGCGGAGCATTCCCTTGCAAATCCTGCAACAGGTCATTTGGTTCAGAGAGTGCTGTGCAATCCCACACAAAAGCTAAACACAGTGCTGAGAAGTGA | 960 | 42.08 | MEFWGVEVKVGEPLSVSPGEEKILHLSQACLGESKSKGSEQVYLYVKVGNQKLVLGSLSSEKFPQVSFDLVFDKEFELSHNWKNGSVYFTGYKSIVPDEYPFTELFSYLSYTDSDEDLPLAITDNGKPETQPKEDAKADVSGTKRKVKIVEPNKGNSNSVIDSKKDDDSSDEDDEESTDDENAIGGEEDDSDDENELFGEDSEETENEDSDDSSEDEQTPKKAEASKKRPLESANKTPVPDKKAKLVTPQKTDGKKGVVHIATPHPSKKAGKTPATNDQPKQQTPKSAGGAFPCKSCNRSFGSESAVQSHTKAKHSAEK | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3457268 | 3461518 | - | evm.model.ptg000018l.245 | HCH11g0370 | 553837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0370 | 319 | Pfam | Nucleoplasmin-like domain | 3 | 92 | IPR041232 | - | |
HCH11g0370 | 319 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 292 | 319 | IPR013087 | - | |
HCH11g0370 | 319 | MobiDBLite | consensus disorder prediction | 270 | 286 | - | - | |
HCH11g0370 | 319 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 294 | 315 | IPR013087 | - | |
HCH11g0370 | 319 | Gene3D | Nucleoplasmin core domain | 1 | 96 | - | - | |
HCH11g0370 | 319 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - | |
HCH11g0370 | 319 | MobiDBLite | consensus disorder prediction | 215 | 239 | - | - | |
HCH11g0370 | 319 | FunFam | Histone deacetylase HDT1 | 1 | 98 | - | - | |
HCH11g0370 | 319 | MobiDBLite | consensus disorder prediction | 119 | 319 | - | - | |
HCH11g0370 | 319 | MobiDBLite | consensus disorder prediction | 167 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0370 | HCH-Chr11:3457268 | HCH2g1240 | HCH-Chr2:54750416 | 6.90E-46 | wgd | |
HCH11g0370 | HCH-Chr11:3457268 | HCH3g1157 | HCH-Chr3:40543794 | 1.00E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32542 | PF17800 | NPL | 2.80E-13 | CL0055 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0370 | - | - | - | 0.0 |