Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0370 ATGGAGTTTTGGGGTGTTGAGGTTAAAGTTGGAGAACCCCTCTCAGTGAGTCCTGGAGAGGAGAAGATATTGCATCTGTCACAGGCTTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTATCTATATGTTAAGGTCGGCAATCAAAAGCTTGTTTTAGGATCGCTCTCCTCAGAGAAATTCCCTCAAGTCTCTTTTGATCTGGTGTTTGACAAGGAATTTGAGCTATCCCATAATTGGAAAAATGGAAGTGTCTACTTCACGGGATATAAATCTATCGTTCCAGACGAATATCCTTTTACTGAATTATTTTCTTATTTGAGCTATACTGATTCTGATGAGGATCTTCCGCTAGCTATCACTGACAACGGAAAGCCCGAGACTCAACCTAAGGAAGATGCAAAAGCTGATGTTTCTGGGACTAAACGAAAAGTGAAGATTGTAGAACCAAACAAAGGTAACTCTAATTCAGTTATTGACAGTAAGAAGGATGACGATTCTTCTGATGAAGATGATGAAGAGAGCACAGATGATGAGAATGCAATTGGAGGTGAAGAAGATGATAGTGATGATGAAAATGAGCTTTTTGGTGAAGATAGTGAAGAAACTGAAAATGAGGATTCTGATGACAGTTCAGAGGATGAGCAGACACCGAAAAAGGCTGAAGCAAGCAAGAAGAGACCTTTAGAATCTGCTAACAAGACACCGGTTCCTGATAAGAAGGCAAAGCTGGTTACTCCTCAGAAAACTGATGGGAAGAAAGGTGTTGTCCATATAGCTACTCCTCACCCTTCAAAGAAAGCTGGGAAAACACCTGCTACTAACGACCAACCTAAGCAGCAAACTCCCAAATCAGCTGGCGGAGCATTCCCTTGCAAATCCTGCAACAGGTCATTTGGTTCAGAGAGTGCTGTGCAATCCCACACAAAAGCTAAACACAGTGCTGAGAAGTGA 960 42.08 MEFWGVEVKVGEPLSVSPGEEKILHLSQACLGESKSKGSEQVYLYVKVGNQKLVLGSLSSEKFPQVSFDLVFDKEFELSHNWKNGSVYFTGYKSIVPDEYPFTELFSYLSYTDSDEDLPLAITDNGKPETQPKEDAKADVSGTKRKVKIVEPNKGNSNSVIDSKKDDDSSDEDDEESTDDENAIGGEEDDSDDENELFGEDSEETENEDSDDSSEDEQTPKKAEASKKRPLESANKTPVPDKKAKLVTPQKTDGKKGVVHIATPHPSKKAGKTPATNDQPKQQTPKSAGGAFPCKSCNRSFGSESAVQSHTKAKHSAEK 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3457268 3461518 - evm.model.ptg000018l.245 HCH11g0370 553837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0370 319 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
HCH11g0370 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 319 IPR013087 -
HCH11g0370 319 MobiDBLite consensus disorder prediction 270 286 - -
HCH11g0370 319 ProSitePatterns Zinc finger C2H2 type domain signature. 294 315 IPR013087 -
HCH11g0370 319 Gene3D Nucleoplasmin core domain 1 96 - -
HCH11g0370 319 MobiDBLite consensus disorder prediction 128 151 - -
HCH11g0370 319 MobiDBLite consensus disorder prediction 215 239 - -
HCH11g0370 319 FunFam Histone deacetylase HDT1 1 98 - -
HCH11g0370 319 MobiDBLite consensus disorder prediction 119 319 - -
HCH11g0370 319 MobiDBLite consensus disorder prediction 167 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0370 HCH-Chr11:3457268 HCH2g1240 HCH-Chr2:54750416 6.90E-46 wgd
HCH11g0370 HCH-Chr11:3457268 HCH3g1157 HCH-Chr3:40543794 1.00E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32542 PF17800 NPL 2.80E-13 CL0055 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0370 - - - 0.0