Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0373 ATGGAAATGCCCGGTAGGAGATTGAATTACACACTCCTAAGTCAAATTCCCGACGATCAATTCAGTGGCGCAAACGCTGTTTCATCTTCTTTGATTGAATCGTCGTCCGGCGAAGGGAAAAACGATAAGAGGAAGACAGAGAAAGGATTGGATTGGGAGATGAGTGGTGATCATAGACAGCAGCAAGGGAATTGGATCGGGAATATGTATTCGTCGTTTGGATTGCAGAGGCAATCGAGTGGGAGTAGTTTCGGTGAGAGTTCGATATCGGGAGAGTATTATGCGCCGACGCCGCCGACTGTGGCGGGAAATGAGATGGATGGATTCGGTGAATCGAGAGGTCAGGGGATGGGGATGGAGACGGCTGTGGGGACTGGAGGATCTTGTAGTAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTATCAGTTGCAGTTGGCATTGGCGCTTAGGTTGTCGTCGGAGGCTACGTGTGCTGATGATCCGAATTTCTTGAGTCCGTTTCAGGATGATTCGGTTTCGAGGTGGTCTTTGAGCTCGGCCGAAGCCATGTCGCATCGGTTTTGGGTGAATGGCTGTCTATCATATTTCGACAAAGTTCCCGATGGTTTTTATCTAATCCATGGAATGGATCCTTATGTATGGACTGTGTGCACCAGCCTGCTCGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACAGATGCTTCTATTGAAGTTGTTCTGATTGATCGACGCACTGATCCCAACTTAAAAGACCTACAAAATTGGGTTCAAAGCATTTCATGCAGTTCTATAACCACAAAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAAAAGTTTGGGTGGCTCAGTTTCGACTGAAGAAGATGTATTGGTATCCATCTGGAGGGAGTGCAGTGATAACTTAAAGGAGACCTTAGGTTCAGTGGTTGTTCCTCTTGGTGGCCTCTCAGTTGGACTCTGCCGACATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGGGTAGCCAAGGGCTGTAGATATTGCTCATGCCATGATGCTTCCTCTTGTCTTGTTCAGTTTGGGCTTGACAAGGAGTGTCTGGTTGACTTGATTGGAAATCCAGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATCTCAATCTCCTCACCGCTGCGTTTTCCACGTCAAAAGCCAATTGAGCCAACCATTGATTTCAGGTCACTGGCTAAGCAGTACTTTTCAGATTGCCAGACACTTAATATTGTATTTGACGAAGCTTCCTCTGAAGATGCTGCACTCCCGAAAACTTCTCAGCCTAACTCCCAAGATAGAGATTCCCAACAAGTTAAAGCACGTGATGTTTTTCACAATGTTACACACTCAACTGCCCTGGTCGAGGAGCCAGTTCCGCTAAAGTATGCTCCTCATATTGGTCGTAGAAGTTCGCAGTCACTGTATGAGATGTCCCATCCAAGGGATTCTACTATGGATGTAAGGTTTGCCCAGGTAGGTCAGCGAATTCCGAGCACTCAGAGTAATACAATTCCCGTTGGTACAGAGGATTTTGACATTCCATGGAGTGATCTCGTTTTAAAAGAAAGAATTGGAGCAGGTTCTTTCGGAACTGTCCATCGTGCTGATTGGAATGGTTCGGAAGTTGCTGTGAAGATACTCACAGAACAAGACTTCCATCCCGATCGTGTTAATGAGTTTCTGAGAGAGGTTGCTATTATGAAATCCCTACGGCATCCTAATATTGTACTGTTTATGGGTGCGGTGACGAAGCCACCAAACTTGTCCATTGTCACAGAATATCTATCAAGAGGTAGCTTATACAGGCTTTTACATAGATCAGGTGCCAAAGATGTAGACGAGACACGTCGCTTAAGTATGGCTTATGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCACCGTGATTTAAAATCTCCAAATCTTTTGGTTGACAAGAAGTATACAGTAAAGGTCTGTGATTTTGGTCTCTCCCGTTTAAAAGCACGCACATTTCTGTCATCAAAATCTGCAGCTGGAACACCTGAATGGATGGCACCAGAAGTACTACGCGATGAGCCATCAAATGAAAAGTCAGATGTCTACAGCTTTGGTGTGATTTTATGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATTTGAACCCAGCTCAGGTTGTGGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATTCCACGTGATGTAAATCCCAAAGTGGCTTCCTTAATAGAGGTTTGCTGGGCCAATGAGCCATCCAAACGTCCATCTTTTTCCAGCATAATGGAATCGTTGAGGCCAATGATTAAACAAACTACACCTCAACCTGGTCGTGCAGATATGCGGCCGGTCATGTGA 2448 45.51 MEMPGRRLNYTLLSQIPDDQFSGANAVSSSLIESSSGEGKNDKRKTEKGLDWEMSGDHRQQQGNWIGNMYSSFGLQRQSSGSSFGESSISGEYYAPTPPTVAGNEMDGFGESRGQGMGMETAVGTGGSCSKSWAQQTEESYQLQLALALRLSSEATCADDPNFLSPFQDDSVSRWSLSSAEAMSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLLDNDRMPSIESLKSVDPSTDASIEVVLIDRRTDPNLKDLQNWVQSISCSSITTKEVVDQLAKLVCKSLGGSVSTEEDVLVSIWRECSDNLKETLGSVVVPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCRYCSCHDASSCLVQFGLDKECLVDLIGNPGCLYEPDSLLNGPSSISISSPLRFPRQKPIEPTIDFRSLAKQYFSDCQTLNIVFDEASSEDAALPKTSQPNSQDRDSQQVKARDVFHNVTHSTALVEEPVPLKYAPHIGRRSSQSLYEMSHPRDSTMDVRFAQVGQRIPSTQSNTIPVGTEDFDIPWSDLVLKERIGAGSFGTVHRADWNGSEVAVKILTEQDFHPDRVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHRSGAKDVDETRRLSMAYDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKVASLIEVCWANEPSKRPSFSSIMESLRPMIKQTTPQPGRADMRPVM 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3504491 3517166 + evm.model.ptg000018l.242 HCH11g0373 553840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0373 815 CDD STKc_MAP3K-like 548 795 - -
HCH11g0373 815 SUPERFAMILY Protein kinase-like (PK-like) 518 795 IPR011009 -
HCH11g0373 815 MobiDBLite consensus disorder prediction 26 50 - -
HCH11g0373 815 SMART serkin_6 542 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 MobiDBLite consensus disorder prediction 443 463 - -
HCH11g0373 815 PRINTS Tyrosine kinase catalytic domain signature 656 674 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 PRINTS Tyrosine kinase catalytic domain signature 766 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 PRINTS Tyrosine kinase catalytic domain signature 722 744 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 PRINTS Tyrosine kinase catalytic domain signature 703 713 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 PRINTS Tyrosine kinase catalytic domain signature 616 629 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 MobiDBLite consensus disorder prediction 444 458 - -
HCH11g0373 815 ProSiteProfiles Protein kinase domain profile. 542 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 Pfam Ethylene-responsive protein kinase Le-CTR1 180 385 - -
HCH11g0373 815 PANTHER SERINE-THREONINE PROTEIN KINASE 162 798 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH11g0373 815 Gene3D Transferase(Phosphotransferase) domain 1 621 810 - -
HCH11g0373 815 Pfam Protein tyrosine and serine/threonine kinase 543 795 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 ProSitePatterns Protein kinases ATP-binding region signature. 548 569 IPR017441 GO:0005524(InterPro)
HCH11g0373 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0373 815 FunFam Serine/threonine-protein kinase CTR1 621 805 - -
HCH11g0373 815 Gene3D Phosphorylase Kinase; domain 1 535 620 - -
HCH11g0373 815 FunFam Serine/threonine-protein kinase isoform 1 532 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0373 HCH-Chr11:3504491 HCH12g0507 HCH-Chr12:2986428 1.60E-115 dispersed
HCH12g0705 HCH-Chr12:4322882 HCH11g0373 HCH-Chr11:3504491 5.20E-174 transposed
HCH2g0854 HCH-Chr2:52165113 HCH11g0373 HCH-Chr11:3504491 1.70E-69 transposed
HCH3g0203 HCH-Chr3:1295055 HCH11g0373 HCH-Chr11:3504491 3.00E-119 transposed
HCH6g1751 HCH-Chr6:50008366 HCH11g0373 HCH-Chr11:3504491 6.30E-93 transposed
HCH8g0166 HCH-Chr8:6185226 HCH11g0373 HCH-Chr11:3504491 4.90E-124 transposed
HCH11g0373 HCH-Chr11:3504491 HCH9g0516 HCH-Chr9:3311571 1.40E-297 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81050 PF07714 PK_Tyr_Ser-Thr 1.90E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0373 K14510 - csv:101208452 1319.29