Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0376 | ATGGAAATGGAAAGTTCACGTAGACCCTTCGATCGAACAAGAGAACCAGGATTGAAGAAGCCACGACTTGCTGATGAAGCTGAACGTGGAGGAAATAGTATCAATGGGCGGCAATTTCCGCAAAGACCGGTTGTTTCGGTGCAACCGCGCTTTCGAGCAAATGATCGAGATTCCGGTAGCAGTGATTCGGGTAGAGGGGGTTATCAGCCTCAGCCACCACAACATCAGGAGCTTGTGAGTCAGTATAGGACTGCTCTAGCTGAGCTCACTTTCAATTCGAAACCAATTATTACGAATTTGACTATTATTGCTGGTGAGAATCTTCAGGCGGCGAAAGCAATATCCGCTACCGTTTGCATCAATATTCTTGAGGTTCCCAGTGACCAGAAGCTCCCATCACTTTATTTGTTGGACAGCATCGTAAAGAATATTGGGAGAGATTACATAAAATACTTTGCTCCAAGACTGCCTGAGGTATTCTGCAAAGCTTACCGGCAGGTTGACCCTCCTGTTCATTCAAGTATGAGACATCTTTTTGGCACATGGAAAGGAGTGTTTCCTCCTCAAACGCTGCAAGCTATTGAGAAAGAGCTTGGCTTTATGCCTAGCAGTGGTTCTTCTTCTGGGACCTTAACATCAAAGCCTGATTTGCAGGCACAACGTCCACCCCATAGCATCCATGTAAATCCTAAGTACATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGCTAAAGGAATGACCAATGATGTCACTGGGGCTACAACAAATGTATCTCAGGATGTCACTCAAGCCAAAATTAGTTCTGGACGTCCATGGGTGGATGCTCCTATTAAAGGGCTTGACATTCAACATCCTCTTAGAGATACACCAAATGATATGGCACATGAGAAGAACATTACAGCTGCATATGCAGACTACGAATATGGCTCTGATCTTTCTAGGAATTCAAGTATGGGAAGAAGAGTAATTGATGAAGGGCGTGACAAATCTTGGTCTGCAGCTGGAAGCAATGTAGCTGAGAAATTATCTGGCCAAAGAAATGGATTTAATATGAAGGTTGGATACGAAAATTACCCTGTACCCAAATCTGCAAACACTGGTGCTCGTCTACTGCATACACAGAATTTTTCTAGTAGCAGCAGCAGAGGATTGTTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTATATGTGGGGTGAAACGAACTCAATGCTGACAGGTCATGGTGCACCAAGTATTAGCACTAGAAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGTCATTAAGCATACGGGATACTAGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAACAGAGAGAAGTGGGGGATTCTGGACAGCAAAGGTCATCTCTGTGGCAATTGCAGGAGCCAATATCTTTGGATAGGCTGAAAGGTTCTGGGGATCCTAGAAAGAATTTAGTTAACTCAGGAGGTTATGGTGCAACTCTTAGTGCACTACCAGGTGCTAGCTCTTCTCTGGATCAAATGGGAGGACGTTCTCAGATTACATCATCTAATATTGGAGTTTCAGGACATAGGTTTCTGAACAAAGGAGGTTCAGGTTCCATGGGGGCTGTAGTCCAGCAAAGATTTCCATCTCAAAGTGTGGCGTTACCATCTGGACAGCTACCATTGCACCAACGTCCGTCTTCACCATCATTAGCAGATCGCCATGTTCCTCACCAAGTGCACGATTTGACAGAGCAAATCCAACCGCAGGTACATTCCCTGCCTAGGCCAGATCAGAAACCTTCTTCACTTTCTAATGTTGGGTCGCGTAAAAAGCATATTCAGGATTCTGCACTTAACCTGCCTCCTAGTGTTCGTCTGGATAACCTCCAAAAGTCACAGACTCGGGACCTGCATGCTTCAGCTTCATCTATACCTGATTCTCAACCAAGGCACCAATTTTCCATATCTGAGCCACTAAAACCTGACTTCATATTGCCTGAACTTTCTAATCAGCATGCAGTATCATCAATTCCAGCCACTGATTTTGGACCCCCCTTTTCAGTTGGGAATTCTGCATCAGATCGATCACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGTTGCTGTAATGAAGAGTGGTCTTTTCTCCAACAATTCTTTAACTGGTAGCATGCAGAATATCAGGTTTCAAGATGTGGGAAATATGCCACCTCAAGCAGGCATCAAACCTCCTCTGCCAAGTATGTCTTCTCCTACCCATACTCAATCATCCTTGGAGCCAAAGATTGTCGGAGAACCTTCTTCATTAGGTCCTCCATCTCTTGAAGGCCCTTCAACTTCGGTTAAAACATCTCGGACTAAGGTAGAAGTATCACAATTGCCATCTGGGTCACTGCCACCTTCATCTTCCATGATTAGTACTGCAACTGAAACGTCAAATGTGGTAAATGATACTTCCAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGTCTGATATCTGCTTCAAAAGGGGAGCTTCCAAATATCTTGACATCCCCAATATCTTCGCAACCTGAAAATTTGAAATCAGGGGATACTGTGACTAGTTCTGTACCAGTTTCTTCTCCCAGTCCATCATCTACGAGGCTTGAGATATCTTCAGAACCTGCTGGCAAGAGCTCCACTACACCTCCATTAGCCACAACTGCCAAGAGCTCCACTACACCTCCATTAGCCACAACTGCCAAGAGCTCCACTACACCTCCATTAGCCACAACTGCCAAGAGCTCCACTATGCCCCCATTAGCCACAACCGCCAGGAGCTCCAATACACCTCCATTAACCACAACTGAGATAAATAACCTCATTGGCTTTGAATTTAGTTCACATATTATTCGCAAATTTCATTCATCTGTGATTGATGAACTCTTTGATGGTCTTTCGTATCAATGTAAGATTTGCGGTCTTAGACTGAAACTTGAAGAACAACTGGATACACATTTGCAGTGGCATGCTTCAAGAACAGAAGCAAACAATTTAAATAGGACATCAAGGGGGTGGTATTCATACTCAGGTGATTGGGTGGCTGAAAATTCAAGACTTCTACTTGATGCTTCTAGTTCAGCAGACAAGCTCGATGAGATGGTAGAGGATAATGATGAGCCAATGGTTCCTGCGGATGAAAATCAATTTGCTTGTGTTTTATGTGGTGAGCTTTTTGAAGATTTTTACAGTCAAGTGAAGGGGGAATGGATGTTCAAAGGAGCTACGTACATTACCATCCCTTCAGCAGGTGGTGAGCCGGGAAGCACAAAAGAGAGAGATGCTAGAGGACCCATCGTGCACACAAATTGCATCACGGAAAGTTCTGCATATGACTTGGGATTGGCAAATGATATTAAGATGGAAATGGATGTATAA | 3435 | 44.13 | MEMESSRRPFDRTREPGLKKPRLADEAERGGNSINGRQFPQRPVVSVQPRFRANDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCINILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAPRLPEVFCKAYRQVDPPVHSSMRHLFGTWKGVFPPQTLQAIEKELGFMPSSGSSSGTLTSKPDLQAQRPPHSIHVNPKYIERQRLQQSGRAKGMTNDVTGATTNVSQDVTQAKISSGRPWVDAPIKGLDIQHPLRDTPNDMAHEKNITAAYADYEYGSDLSRNSSMGRRVIDEGRDKSWSAAGSNVAEKLSGQRNGFNMKVGYENYPVPKSANTGARLLHTQNFSSSSSRGLLSTNWKNSEEEEYMWGETNSMLTGHGAPSISTRKDQWTPEDSDNSGIENKSLSIRDTRASVDREASSDSQSSEQREVGDSGQQRSSLWQLQEPISLDRLKGSGDPRKNLVNSGGYGATLSALPGASSSLDQMGGRSQITSSNIGVSGHRFLNKGGSGSMGAVVQQRFPSQSVALPSGQLPLHQRPSSPSLADRHVPHQVHDLTEQIQPQVHSLPRPDQKPSSLSNVGSRKKHIQDSALNLPPSVRLDNLQKSQTRDLHASASSIPDSQPRHQFSISEPLKPDFILPELSNQHAVSSIPATDFGPPFSVGNSASDRSPAEILGEPSTSSLLVAVMKSGLFSNNSLTGSMQNIRFQDVGNMPPQAGIKPPLPSMSSPTHTQSSLEPKIVGEPSSLGPPSLEGPSTSVKTSRTKVEVSQLPSGSLPPSSSMISTATETSNVVNDTSSPISNLLSSLVAKGLISASKGELPNILTSPISSQPENLKSGDTVTSSVPVSSPSPSSTRLEISSEPAGKSSTTPPLATTAKSSTTPPLATTAKSSTTPPLATTAKSSTMPPLATTARSSNTPPLTTTEINNLIGFEFSSHIIRKFHSSVIDELFDGLSYQCKICGLRLKLEEQLDTHLQWHASRTEANNLNRTSRGWYSYSGDWVAENSRLLLDASSSADKLDEMVEDNDEPMVPADENQFACVLCGELFEDFYSQVKGEWMFKGATYITIPSAGGEPGSTKERDARGPIVHTNCITESSAYDLGLANDIKMEMDV | 1144 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3529276 | 3536171 | + | evm.model.ptg000018l.239 | HCH11g0376 | 553843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0376 | 1144 | SMART | 558neu5 | 77 | 199 | IPR006569 | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 559 | 578 | - | - | |
HCH11g0376 | 1144 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 987 | 1014 | IPR013087 | - | |
HCH11g0376 | 1144 | Gene3D | - | 69 | 199 | IPR008942 | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 404 | 473 | - | - | |
HCH11g0376 | 1144 | Pfam | CID domain | 84 | 193 | IPR006569 | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
HCH11g0376 | 1144 | CDD | CID_Pcf11 | 79 | 195 | IPR047415 | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 855 | 951 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 754 | 771 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 593 | 659 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 781 | 821 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 60 | 74 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 202 | 224 | - | - | |
HCH11g0376 | 1144 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 989 | 1009 | IPR013087 | - | |
HCH11g0376 | 1144 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 54 | 1141 | IPR045154 | GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro) | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 593 | 617 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
HCH11g0376 | 1144 | FunFam | polyadenylation and cleavage factor homolog 4 | 71 | 199 | - | - | |
HCH11g0376 | 1144 | SUPERFAMILY | ENTH/VHS domain | 74 | 198 | IPR008942 | - | |
HCH11g0376 | 1144 | ProSiteProfiles | CID domain profile. | 74 | 202 | IPR006569 | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 449 | 473 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 202 | 219 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 743 | 821 | - | - | |
HCH11g0376 | 1144 | MobiDBLite | consensus disorder prediction | 626 | 659 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0376 | HCH-Chr11:3529276 | HCH9g1400 | HCH-Chr9:46315384 | 5.30E-64 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0376 | K14400 | - | csv:101223169 | 1490.71 |