Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0376 ATGGAAATGGAAAGTTCACGTAGACCCTTCGATCGAACAAGAGAACCAGGATTGAAGAAGCCACGACTTGCTGATGAAGCTGAACGTGGAGGAAATAGTATCAATGGGCGGCAATTTCCGCAAAGACCGGTTGTTTCGGTGCAACCGCGCTTTCGAGCAAATGATCGAGATTCCGGTAGCAGTGATTCGGGTAGAGGGGGTTATCAGCCTCAGCCACCACAACATCAGGAGCTTGTGAGTCAGTATAGGACTGCTCTAGCTGAGCTCACTTTCAATTCGAAACCAATTATTACGAATTTGACTATTATTGCTGGTGAGAATCTTCAGGCGGCGAAAGCAATATCCGCTACCGTTTGCATCAATATTCTTGAGGTTCCCAGTGACCAGAAGCTCCCATCACTTTATTTGTTGGACAGCATCGTAAAGAATATTGGGAGAGATTACATAAAATACTTTGCTCCAAGACTGCCTGAGGTATTCTGCAAAGCTTACCGGCAGGTTGACCCTCCTGTTCATTCAAGTATGAGACATCTTTTTGGCACATGGAAAGGAGTGTTTCCTCCTCAAACGCTGCAAGCTATTGAGAAAGAGCTTGGCTTTATGCCTAGCAGTGGTTCTTCTTCTGGGACCTTAACATCAAAGCCTGATTTGCAGGCACAACGTCCACCCCATAGCATCCATGTAAATCCTAAGTACATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGCTAAAGGAATGACCAATGATGTCACTGGGGCTACAACAAATGTATCTCAGGATGTCACTCAAGCCAAAATTAGTTCTGGACGTCCATGGGTGGATGCTCCTATTAAAGGGCTTGACATTCAACATCCTCTTAGAGATACACCAAATGATATGGCACATGAGAAGAACATTACAGCTGCATATGCAGACTACGAATATGGCTCTGATCTTTCTAGGAATTCAAGTATGGGAAGAAGAGTAATTGATGAAGGGCGTGACAAATCTTGGTCTGCAGCTGGAAGCAATGTAGCTGAGAAATTATCTGGCCAAAGAAATGGATTTAATATGAAGGTTGGATACGAAAATTACCCTGTACCCAAATCTGCAAACACTGGTGCTCGTCTACTGCATACACAGAATTTTTCTAGTAGCAGCAGCAGAGGATTGTTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTATATGTGGGGTGAAACGAACTCAATGCTGACAGGTCATGGTGCACCAAGTATTAGCACTAGAAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGTCATTAAGCATACGGGATACTAGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAACAGAGAGAAGTGGGGGATTCTGGACAGCAAAGGTCATCTCTGTGGCAATTGCAGGAGCCAATATCTTTGGATAGGCTGAAAGGTTCTGGGGATCCTAGAAAGAATTTAGTTAACTCAGGAGGTTATGGTGCAACTCTTAGTGCACTACCAGGTGCTAGCTCTTCTCTGGATCAAATGGGAGGACGTTCTCAGATTACATCATCTAATATTGGAGTTTCAGGACATAGGTTTCTGAACAAAGGAGGTTCAGGTTCCATGGGGGCTGTAGTCCAGCAAAGATTTCCATCTCAAAGTGTGGCGTTACCATCTGGACAGCTACCATTGCACCAACGTCCGTCTTCACCATCATTAGCAGATCGCCATGTTCCTCACCAAGTGCACGATTTGACAGAGCAAATCCAACCGCAGGTACATTCCCTGCCTAGGCCAGATCAGAAACCTTCTTCACTTTCTAATGTTGGGTCGCGTAAAAAGCATATTCAGGATTCTGCACTTAACCTGCCTCCTAGTGTTCGTCTGGATAACCTCCAAAAGTCACAGACTCGGGACCTGCATGCTTCAGCTTCATCTATACCTGATTCTCAACCAAGGCACCAATTTTCCATATCTGAGCCACTAAAACCTGACTTCATATTGCCTGAACTTTCTAATCAGCATGCAGTATCATCAATTCCAGCCACTGATTTTGGACCCCCCTTTTCAGTTGGGAATTCTGCATCAGATCGATCACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGTTGCTGTAATGAAGAGTGGTCTTTTCTCCAACAATTCTTTAACTGGTAGCATGCAGAATATCAGGTTTCAAGATGTGGGAAATATGCCACCTCAAGCAGGCATCAAACCTCCTCTGCCAAGTATGTCTTCTCCTACCCATACTCAATCATCCTTGGAGCCAAAGATTGTCGGAGAACCTTCTTCATTAGGTCCTCCATCTCTTGAAGGCCCTTCAACTTCGGTTAAAACATCTCGGACTAAGGTAGAAGTATCACAATTGCCATCTGGGTCACTGCCACCTTCATCTTCCATGATTAGTACTGCAACTGAAACGTCAAATGTGGTAAATGATACTTCCAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGTCTGATATCTGCTTCAAAAGGGGAGCTTCCAAATATCTTGACATCCCCAATATCTTCGCAACCTGAAAATTTGAAATCAGGGGATACTGTGACTAGTTCTGTACCAGTTTCTTCTCCCAGTCCATCATCTACGAGGCTTGAGATATCTTCAGAACCTGCTGGCAAGAGCTCCACTACACCTCCATTAGCCACAACTGCCAAGAGCTCCACTACACCTCCATTAGCCACAACTGCCAAGAGCTCCACTACACCTCCATTAGCCACAACTGCCAAGAGCTCCACTATGCCCCCATTAGCCACAACCGCCAGGAGCTCCAATACACCTCCATTAACCACAACTGAGATAAATAACCTCATTGGCTTTGAATTTAGTTCACATATTATTCGCAAATTTCATTCATCTGTGATTGATGAACTCTTTGATGGTCTTTCGTATCAATGTAAGATTTGCGGTCTTAGACTGAAACTTGAAGAACAACTGGATACACATTTGCAGTGGCATGCTTCAAGAACAGAAGCAAACAATTTAAATAGGACATCAAGGGGGTGGTATTCATACTCAGGTGATTGGGTGGCTGAAAATTCAAGACTTCTACTTGATGCTTCTAGTTCAGCAGACAAGCTCGATGAGATGGTAGAGGATAATGATGAGCCAATGGTTCCTGCGGATGAAAATCAATTTGCTTGTGTTTTATGTGGTGAGCTTTTTGAAGATTTTTACAGTCAAGTGAAGGGGGAATGGATGTTCAAAGGAGCTACGTACATTACCATCCCTTCAGCAGGTGGTGAGCCGGGAAGCACAAAAGAGAGAGATGCTAGAGGACCCATCGTGCACACAAATTGCATCACGGAAAGTTCTGCATATGACTTGGGATTGGCAAATGATATTAAGATGGAAATGGATGTATAA 3435 44.13 MEMESSRRPFDRTREPGLKKPRLADEAERGGNSINGRQFPQRPVVSVQPRFRANDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCINILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAPRLPEVFCKAYRQVDPPVHSSMRHLFGTWKGVFPPQTLQAIEKELGFMPSSGSSSGTLTSKPDLQAQRPPHSIHVNPKYIERQRLQQSGRAKGMTNDVTGATTNVSQDVTQAKISSGRPWVDAPIKGLDIQHPLRDTPNDMAHEKNITAAYADYEYGSDLSRNSSMGRRVIDEGRDKSWSAAGSNVAEKLSGQRNGFNMKVGYENYPVPKSANTGARLLHTQNFSSSSSRGLLSTNWKNSEEEEYMWGETNSMLTGHGAPSISTRKDQWTPEDSDNSGIENKSLSIRDTRASVDREASSDSQSSEQREVGDSGQQRSSLWQLQEPISLDRLKGSGDPRKNLVNSGGYGATLSALPGASSSLDQMGGRSQITSSNIGVSGHRFLNKGGSGSMGAVVQQRFPSQSVALPSGQLPLHQRPSSPSLADRHVPHQVHDLTEQIQPQVHSLPRPDQKPSSLSNVGSRKKHIQDSALNLPPSVRLDNLQKSQTRDLHASASSIPDSQPRHQFSISEPLKPDFILPELSNQHAVSSIPATDFGPPFSVGNSASDRSPAEILGEPSTSSLLVAVMKSGLFSNNSLTGSMQNIRFQDVGNMPPQAGIKPPLPSMSSPTHTQSSLEPKIVGEPSSLGPPSLEGPSTSVKTSRTKVEVSQLPSGSLPPSSSMISTATETSNVVNDTSSPISNLLSSLVAKGLISASKGELPNILTSPISSQPENLKSGDTVTSSVPVSSPSPSSTRLEISSEPAGKSSTTPPLATTAKSSTTPPLATTAKSSTTPPLATTAKSSTMPPLATTARSSNTPPLTTTEINNLIGFEFSSHIIRKFHSSVIDELFDGLSYQCKICGLRLKLEEQLDTHLQWHASRTEANNLNRTSRGWYSYSGDWVAENSRLLLDASSSADKLDEMVEDNDEPMVPADENQFACVLCGELFEDFYSQVKGEWMFKGATYITIPSAGGEPGSTKERDARGPIVHTNCITESSAYDLGLANDIKMEMDV 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3529276 3536171 + evm.model.ptg000018l.239 HCH11g0376 553843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0376 1144 SMART 558neu5 77 199 IPR006569 -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 559 578 - -
HCH11g0376 1144 ProSiteProfiles Zinc finger C2H2 type domain profile. 987 1014 IPR013087 -
HCH11g0376 1144 Gene3D - 69 199 IPR008942 -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 404 473 - -
HCH11g0376 1144 Pfam CID domain 84 193 IPR006569 -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 1 27 - -
HCH11g0376 1144 CDD CID_Pcf11 79 195 IPR047415 -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 855 951 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 754 771 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 593 659 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 781 821 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 60 74 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 202 224 - -
HCH11g0376 1144 ProSitePatterns Zinc finger C2H2 type domain signature. 989 1009 IPR013087 -
HCH11g0376 1144 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 54 1141 IPR045154 GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro)
HCH11g0376 1144 MobiDBLite consensus disorder prediction 593 617 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 1 74 - -
HCH11g0376 1144 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
HCH11g0376 1144 SUPERFAMILY ENTH/VHS domain 74 198 IPR008942 -
HCH11g0376 1144 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 449 473 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 202 219 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 743 821 - -
HCH11g0376 1144 MobiDBLite consensus disorder prediction 626 659 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0376 HCH-Chr11:3529276 HCH9g1400 HCH-Chr9:46315384 5.30E-64 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0376 K14400 - csv:101223169 1490.71