Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0383 | ATGCATGCTTCCCAGTCCAGGACTTATTCGAGTTCGGGTTCTGGCCGGAGTCTATCGACTCCTGGACGGCACCCGATTTATCGAGGAGTTCGGCGGAGGAATACCGGCAAATGGGTGTCGGAAATTCGGGAGCCGAGGAAGCCGAATAGAATATGGTTAGGGACCTTTTCGACTGCTGAAATGGCAGCGGTGGCTTATGATGTTGCAGCCCTTGCACTCAAGGGTCAGGACGCAGAGCTCAACTTTCCGAACTCGGCGTCTTCTCTTCCCGTTCCTGCTTCGACATCGCCCTCTGATATTCAGGCGGCTGCGGCCTCTGCAGCCGCTGCACTTGGAGCAGCTGCAGCAGCCATGAATGTTGGTTATGAAAGTTCAATATCAGGAACTTCTGGTGACATCCATTGCGTGAGAAATTATCAAGAGGTACCAGAAAGGGAGTTTATCGACGAGGATTTGATCTTCGACATGCCGAATGTTTTGATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGGTTCAACAATGGTGGAGAAGATGATGCAGACTATGGAAATGAAAACCTCTGGGGTTTTCCTTGA | 582 | 51.03 | MHASQSRTYSSSGSGRSLSTPGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFSTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPSDIQAAAASAAAALGAAAAAMNVGYESSISGTSGDIHCVRNYQEVPEREFIDEDLIFDMPNVLMNMAEGMLLSPPRFNNGGEDDADYGNENLWGFP | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3637559 | 3638140 | + | evm.model.ptg000018l.232 | HCH11g0383 | 553850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0383 | 193 | PRINTS | Ethylene responsive element binding protein signature | 49 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | PRINTS | Ethylene responsive element binding protein signature | 27 | 38 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 25 | 84 | - | - | |
HCH11g0383 | 193 | CDD | AP2 | 25 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | SMART | rav1_2 | 26 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 13 | 190 | IPR045277 | GO:0003700(InterPro) | |
HCH11g0383 | 193 | SUPERFAMILY | DNA-binding domain | 26 | 85 | IPR016177 | GO:0003677(InterPro) | |
HCH11g0383 | 193 | Gene3D | AP2/ERF domain | 26 | 85 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | Pfam | AP2 domain | 26 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
HCH11g0383 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 26 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0383 | 193 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0383 | HCH-Chr11:3637559 | HCH11g1190 | HCH-Chr11:44199324 | 2.60E-35 | dispersed | |
HCH11g0383 | HCH-Chr11:3637559 | HCH11g0384 | HCH-Chr11:3657614 | 2.40E-25 | tandem | |
HCH11g0383 | HCH-Chr11:3637559 | HCH9g0513 | HCH-Chr9:3295237 | 2.20E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32545 | PF00847 | AP2 | 6.70E-12 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0383 | - | - | - | 0.0 |