Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0383 ATGCATGCTTCCCAGTCCAGGACTTATTCGAGTTCGGGTTCTGGCCGGAGTCTATCGACTCCTGGACGGCACCCGATTTATCGAGGAGTTCGGCGGAGGAATACCGGCAAATGGGTGTCGGAAATTCGGGAGCCGAGGAAGCCGAATAGAATATGGTTAGGGACCTTTTCGACTGCTGAAATGGCAGCGGTGGCTTATGATGTTGCAGCCCTTGCACTCAAGGGTCAGGACGCAGAGCTCAACTTTCCGAACTCGGCGTCTTCTCTTCCCGTTCCTGCTTCGACATCGCCCTCTGATATTCAGGCGGCTGCGGCCTCTGCAGCCGCTGCACTTGGAGCAGCTGCAGCAGCCATGAATGTTGGTTATGAAAGTTCAATATCAGGAACTTCTGGTGACATCCATTGCGTGAGAAATTATCAAGAGGTACCAGAAAGGGAGTTTATCGACGAGGATTTGATCTTCGACATGCCGAATGTTTTGATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGGTTCAACAATGGTGGAGAAGATGATGCAGACTATGGAAATGAAAACCTCTGGGGTTTTCCTTGA 582 51.03 MHASQSRTYSSSGSGRSLSTPGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFSTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPSDIQAAAASAAAALGAAAAAMNVGYESSISGTSGDIHCVRNYQEVPEREFIDEDLIFDMPNVLMNMAEGMLLSPPRFNNGGEDDADYGNENLWGFP 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3637559 3638140 + evm.model.ptg000018l.232 HCH11g0383 553850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0383 193 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 FunFam Ethylene-responsive transcription factor 2 25 84 - -
HCH11g0383 193 CDD AP2 25 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 190 IPR045277 GO:0003700(InterPro)
HCH11g0383 193 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677(InterPro)
HCH11g0383 193 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 MobiDBLite consensus disorder prediction 1 19 - -
HCH11g0383 193 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0383 193 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0383 HCH-Chr11:3637559 HCH11g1190 HCH-Chr11:44199324 2.60E-35 dispersed
HCH11g0383 HCH-Chr11:3637559 HCH11g0384 HCH-Chr11:3657614 2.40E-25 tandem
HCH11g0383 HCH-Chr11:3637559 HCH9g0513 HCH-Chr9:3295237 2.20E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32545 PF00847 AP2 6.70E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0383 - - - 0.0