Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH11g0397 | ATGGAACTTGAATTATTATCTTCCTGGTTCTTGCAGCAATTGATGATGTTCTTTTTCCAGCCTGGTTTTTCCTTCCTTCTTGCTTTCTCTCTCTTCTTCCTCTCTCTAAACCTAATTCTTCTTCTACTAATCATCATCATGAAGAGGCCAAAGCTTGTATGCAACTGTGAAATTTGCCAAGCTTATCTGACATCAAGTTGGTCGGAAAATTTCAGCAATCTTTGTGATTGGTATTCTTATCTTCTCCGAAAATCTCCGACCAAAACCATCCATATCCATGTTCTTAAAAACATCATCACTGCAAACCCTGATAACGTTGAATATATGCTCAAAACGAGATTTGAGAATTTCCCAAAAGGAAAAACTTTCTCTTCGATTCTCGGAGATTTTCTTGGCCGTGGCATATTCAACGTGGATGGTGATTTGTGGAGGTTTCAGAAGAAAATGGCGATCATGGAGCTCGGTCAGCAGTCGATAAGATCGTACGCTTTCGAGATCATTTGCCATGAAATAAAAGACCGTCTTGTTCCTCTTTTGTTGTCTGTGGCTGGAAAAAACGATGGTGTTTTGGATTTGCAAGATGTTTTTAGAAGATTTACTTTTGATAGTATTTGTAGGTTTTCTTTTGGTTTGGATCCTATGTGTTTGGAGCTGTCTCTTCCCATATCGGATTTTGCTATTGCTTTTGATCTTGCTTCCAAGCTTTCTGCTCAAAGAGCTATGATGGTTCCTCCTTTGATCTGGAAAATCAAACGATTTCTCAACTTGGGGAGTGAGAAGGAATTAAAACAAGCTATAAACTTGATCAATATCTTAGCAAGAGAAGTGATTAAACAGAGAAGAAAAAAAGGATTTTCGAGTCATAGAGATCTCCTCTCTCAATTCATGCAAACCGTTTCCGACGAGACATACTTACGAGACATTGTTGTCAGCTTCCTCTTAGCCGGCCGTGACACGGTGGCTTCCGCCTTGACCAGCTTCTTCTGGGTTCTCTCCACCCACCTGGCCGCCGTATCGGCCATCCGGAAAGAGGCGGAGAGAGTTATCTGCTTCGATACTGACAACTTTACGAGCTTCGAACACATGAGAGAGCTTCATTACTTACAAGCAGCAATATACGAGAGCATGAGATTATACCCTCCAATACAATCTGATTCAAAATTCTGTCAGGCCGACGAGGAGTTGCCGGACGGTACGGCGGTCCGGCGGGGGACAAGGGTTACGTACCACCCTTATGCGATGGGCCGGATCGAAGAAATATGGGGTTTGGATTGTCTTGAATTCAAGCCTGAAAGGTGGCTGAGAAACGGCGAGTTTTTCCCGGAAAATCCATTCAAGTACCCGATTTTTCAAGGCGGATTCCGGTTTTGTTTGGGGAAGGAAATGGCTATGGTGGAATTGAAGATGGTGGCTGTTTCACTTATCAGGAGATTTGATATTAGATTAGCGACGCCGTGTGCGACGCCGCGATTCTCGCCGGGACTTACCGCTACCTTTAGCGGCGGATTGAAGGTGTTGGTAAGAGAAAGAGAAAGGGAGACGGTTAGCCAGCTTGAATCTTAG | 1563 | 43.51 | MELELLSSWFLQQLMMFFFQPGFSFLLAFSLFFLSLNLILLLLIIIMKRPKLVCNCEICQAYLTSSWSENFSNLCDWYSYLLRKSPTKTIHIHVLKNIITANPDNVEYMLKTRFENFPKGKTFSSILGDFLGRGIFNVDGDLWRFQKKMAIMELGQQSIRSYAFEIICHEIKDRLVPLLLSVAGKNDGVLDLQDVFRRFTFDSICRFSFGLDPMCLELSLPISDFAIAFDLASKLSAQRAMMVPPLIWKIKRFLNLGSEKELKQAINLINILAREVIKQRRKKGFSSHRDLLSQFMQTVSDETYLRDIVVSFLLAGRDTVASALTSFFWVLSTHLAAVSAIRKEAERVICFDTDNFTSFEHMRELHYLQAAIYESMRLYPPIQSDSKFCQADEELPDGTAVRRGTRVTYHPYAMGRIEEIWGLDCLEFKPERWLRNGEFFPENPFKYPIFQGGFRFCLGKEMAMVELKMVAVSLIRRFDIRLATPCATPRFSPGLTATFSGGLKVLVRERERETVSQLES | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3913347 | 3915236 | - | evm.model.ptg000018l.218 | HCH11g0397 | 553864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH11g0397 | 520 | PANTHER | CYTOCHROME P450 | 44 | 502 | - | - | |
| HCH11g0397 | 520 | Pfam | Cytochrome P450 | 90 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | P450 superfamily signature | 315 | 332 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | P450 superfamily signature | 370 | 381 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | P450 superfamily signature | 457 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | Gene3D | Cytochrome P450 | 64 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | CDD | CYP86A | 98 | 503 | - | - | |
| HCH11g0397 | 520 | SUPERFAMILY | Cytochrome P450 | 72 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | E-class P450 group IV signature | 416 | 434 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | E-class P450 group IV signature | 365 | 381 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | E-class P450 group IV signature | 457 | 475 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH11g0397 | 520 | PRINTS | E-class P450 group IV signature | 399 | 413 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0397 | HCH-Chr11:3913347 | HCH8g1474 | HCH-Chr8:49132513 | 1.70E-113 | dispersed | |
| HCH11g0397 | HCH-Chr11:3913347 | HCH3g1177 | HCH-Chr3:42171642 | 1.70E-182 | wgd | |
| HCH11g0397 | HCH-Chr11:3913347 | HCH9g0504 | HCH-Chr9:3215122 | 7.50E-199 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH11g0397 | K20624 | - | csv:101207686 | 746.503 |