Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0442 | ATGTCACTCCATTCCCCTTCCTTCTCTTTCAATCTCAACCACAACACCACCGCAATCGACGATGATCATGACGTCGTTTGCGGTGGAGGAAAATTCGACAACGACAAGGAACCCATGTTCGAAAAACCGTTAACACCCAGTGATGTCGGTAAGCTCAACCGTCTAGTCATCCCAAAACAATACGCCGAGAAATATTTCCCACTTGCCGGGACCGGCGACAAGGGTCTTCTACTGAGTTTCGAGGATGAATCCGGCAAGTTATGGCGATTTCGATACTCCTACTGGAATAGTAGTCAGAGCTACGTTCTTACCAAAGGATGGAGCCGTTATGTCAAAGACAAGAAGCTCGATGCGGGCGACGTTGTCGTATTCGAACGACACCGTCTCGACGACGATAGATTGTTCATAGGGTGGAAACGGCGGTCGACGGCGGTGCAAGATAGCAGTAGCCATGGAATGGGGGCACATGATAGCAGTAAAAGTTGTAAGGGATGGACAAGAATGTTCTATTCTGGAAATCCATATCCTTCACAGAAACAGAAAAATCATCATCTTCTTCCTCTCCAATCTCACTCTCCTCATGCAGAGTCCTCTGTCCAGAGTCCAACAGCGTCCGTTGGGAACTCAAAGATACTGCGGCTGTTTGGAGTGAACTTGGAGTGTCACACAGACGAGTCTGAACCTGAACTTCCGTCGATGCCCGGTGCCGGGTCATCGCTATCGGGTCAAGATCCGATCCACCATCATTTCTATCCACATTATTCTTCTCCTTTTGCAGATCACATGGATTTCAGTTTCCCACAAGATATCAAGCAGACGAGAAATCATCGAGGATAG | 837 | 48.15 | MSLHSPSFSFNLNHNTTAIDDDHDVVCGGGKFDNDKEPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLAGTGDKGLLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKDKKLDAGDVVVFERHRLDDDRLFIGWKRRSTAVQDSSSHGMGAHDSSKSCKGWTRMFYSGNPYPSQKQKNHHLLPLQSHSPHAESSVQSPTASVGNSKILRLFGVNLECHTDESEPELPSMPGAGSSLSGQDPIHHHFYPHYSSPFADHMDFSFPQDIKQTRNHRG | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4388270 | 4390584 | - | evm.model.ptg000018l.173 | HCH11g0442 | 553909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0442 | 278 | Gene3D | - | 29 | 154 | IPR015300 | - | |
HCH11g0442 | 278 | SMART | B3_2 | 40 | 142 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0442 | 278 | MobiDBLite | consensus disorder prediction | 223 | 244 | - | - | |
HCH11g0442 | 278 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 33 | 219 | IPR044800 | GO:0003700(InterPro) | |
HCH11g0442 | 278 | SUPERFAMILY | DNA-binding pseudobarrel domain | 35 | 141 | IPR015300 | - | |
HCH11g0442 | 278 | CDD | B3_DNA | 38 | 130 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0442 | 278 | Pfam | B3 DNA binding domain | 40 | 141 | IPR003340 | GO:0003677(InterPro) | |
HCH11g0442 | 278 | ProSiteProfiles | B3 DNA-binding domain profile. | 40 | 142 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0442 | HCH-Chr11:4388270 | HCH5g0612 | HCH-Chr5:4302873 | 6.90E-42 | dispersed | |
HCH11g0442 | HCH-Chr11:4388270 | HCH1g0802 | HCH-Chr1:56706788 | 2.70E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32551 | PF02362 | B3 | 1.00E-29 | CL0405 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0442 | K09287 | - | csv:101214938 | 323.168 |