Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0442 ATGTCACTCCATTCCCCTTCCTTCTCTTTCAATCTCAACCACAACACCACCGCAATCGACGATGATCATGACGTCGTTTGCGGTGGAGGAAAATTCGACAACGACAAGGAACCCATGTTCGAAAAACCGTTAACACCCAGTGATGTCGGTAAGCTCAACCGTCTAGTCATCCCAAAACAATACGCCGAGAAATATTTCCCACTTGCCGGGACCGGCGACAAGGGTCTTCTACTGAGTTTCGAGGATGAATCCGGCAAGTTATGGCGATTTCGATACTCCTACTGGAATAGTAGTCAGAGCTACGTTCTTACCAAAGGATGGAGCCGTTATGTCAAAGACAAGAAGCTCGATGCGGGCGACGTTGTCGTATTCGAACGACACCGTCTCGACGACGATAGATTGTTCATAGGGTGGAAACGGCGGTCGACGGCGGTGCAAGATAGCAGTAGCCATGGAATGGGGGCACATGATAGCAGTAAAAGTTGTAAGGGATGGACAAGAATGTTCTATTCTGGAAATCCATATCCTTCACAGAAACAGAAAAATCATCATCTTCTTCCTCTCCAATCTCACTCTCCTCATGCAGAGTCCTCTGTCCAGAGTCCAACAGCGTCCGTTGGGAACTCAAAGATACTGCGGCTGTTTGGAGTGAACTTGGAGTGTCACACAGACGAGTCTGAACCTGAACTTCCGTCGATGCCCGGTGCCGGGTCATCGCTATCGGGTCAAGATCCGATCCACCATCATTTCTATCCACATTATTCTTCTCCTTTTGCAGATCACATGGATTTCAGTTTCCCACAAGATATCAAGCAGACGAGAAATCATCGAGGATAG 837 48.15 MSLHSPSFSFNLNHNTTAIDDDHDVVCGGGKFDNDKEPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLAGTGDKGLLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKDKKLDAGDVVVFERHRLDDDRLFIGWKRRSTAVQDSSSHGMGAHDSSKSCKGWTRMFYSGNPYPSQKQKNHHLLPLQSHSPHAESSVQSPTASVGNSKILRLFGVNLECHTDESEPELPSMPGAGSSLSGQDPIHHHFYPHYSSPFADHMDFSFPQDIKQTRNHRG 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4388270 4390584 - evm.model.ptg000018l.173 HCH11g0442 553909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0442 278 Gene3D - 29 154 IPR015300 -
HCH11g0442 278 SMART B3_2 40 142 IPR003340 GO:0003677(InterPro)
HCH11g0442 278 MobiDBLite consensus disorder prediction 223 244 - -
HCH11g0442 278 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 219 IPR044800 GO:0003700(InterPro)
HCH11g0442 278 SUPERFAMILY DNA-binding pseudobarrel domain 35 141 IPR015300 -
HCH11g0442 278 CDD B3_DNA 38 130 IPR003340 GO:0003677(InterPro)
HCH11g0442 278 Pfam B3 DNA binding domain 40 141 IPR003340 GO:0003677(InterPro)
HCH11g0442 278 ProSiteProfiles B3 DNA-binding domain profile. 40 142 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0442 HCH-Chr11:4388270 HCH5g0612 HCH-Chr5:4302873 6.90E-42 dispersed
HCH11g0442 HCH-Chr11:4388270 HCH1g0802 HCH-Chr1:56706788 2.70E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32551 PF02362 B3 1.00E-29 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0442 K09287 - csv:101214938 323.168