Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0479 | ATGGCGACGTTCCTTCAAAACAATTCTGAATTTCAATCAGCTTCTGATGGTGGCTTACAAACTCTCCTCCTTATGAATCCCGGCTACGTTCAATACTCCGATACGCCGCCGCCGCCTCAGCCTCCTCCGCCTTCTCACTCTCATCCCAACCTTCTTTTCTTCAATTCTACTCATTCCTTCTCTACTCAAAACCTACCTCACGCGCCGCCGTCTCATACTCAGCAATTCGTCGGCATCCCGCTACCCGCGACGGCTTCGCCTTCACCGACCTCTCATTCCCAAGACCATAATTCTCATCCCTTGAATACCCACCATGATATCTCCGCCTTGCATGGCTTTGTCCACCGTATTCCCCATAATATTTGGAACCAAATTGACCCCTCCACGGCGGCGCGTGAAGCCTCACGCGCTCAGCAAGGATTGTCGTTGAGCCTCTCATCTCAGCAGCCGCCGGGATACAGCTCGTTTCGTGGCGAAAGGGATGTTCAATCTCAGGGCCAGAACCAGAACCAACAGCCGGCGGTATCCGGGGACGAAAACATCCGGATTTCCGGTGGATCGTCTTCTTCGGCTTCCGCCGTCACCAATGGCGGAATTCAGGGTGTTTTGCTCAGCTCCAAATACCTCAAGGCAGCACAGGAGCTTCTTGATGAAGTTGTCAATGTCACCAACAACAGCATTAAAACCGAATCCCCGAAAAAGATGACCGGAAATTCTACAAAAATGATCGGCGACCAATCTGCAACGGCTACCGGAGAAGGTTCTTTAGATGCCGAAGCCGAGGGAAAACGCGTCGCGGAACTCACAACCGCGGAAAGACAAGAAATTCAGATGAAGAAAGCAAAACTCATAAACATGCTTGATGAGGTAGAGCAAAGATACAGGCAGTATCATCACCAGATGCAGATAGTAATATCATCATTCGAGCAAGCGGCCGGAGTTGGATCCGCGAGAACATACACGGCATTAGCACTCGAAACGATTTCTAAGCAATTCCGGTGTTTAAAAGATGCCATTACAAGTCAAATTCGAGCAGCAAACAAGAGCTTAGGAGAAGAAGATTGTGTCGGGAAAAAGATCGAAGGTTCGAGACTGAAATTCGTCGATCACCATCTCCGACAACAGCGAGCTCTTCAACAATTGGGAATGATTCAACACAATGCTTGGAGACCTCAACGAGGCTTGCCTGAAAGATCTGTTTCCATACTTCGTGCTTGGCTTTTTGAACACTTTCTCCACCCTTATCCTAAAGATTCAGACAAACATATGCTTGCAAAGCAAACAGGGCTTACTAGGAGCCAGGTATCAAATTGGTTTATAAATGCAAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAGATGTATCTAGAGGAGATAAAGGAGCAAGAACAGAATGGCGGCGGATCAGGGTTGGCGGTAGACAAGACAGTCAGCAAGAGCAATGACGATTCGGGTTCGAAATCGACAGCTCCACCGGAGACGAAAAGTCCGAATTCTAAACAAGAAAACTCCACAAACCAAAATGTGCTTCCTTCCATCTCAATTTCCTCATCTTCTGGAGGACATGTTCGAAACCAACCCGGATTTATGCTCATCGGATCGTCCTCCGAACTCGACGGAATCACACAAGGAAGTCCAAAGAAACAAAGAGGACCTGAAATGTTCCATGCCACCACCCATGTCCCTTTCATAAACATGGATGTGAAGCCGAGAGATGAAGACGAAGAACACGATCATCATCATCATCATCAACAACAACAACATCCTAACCATCATCATCTTCCTATGAAATTTGATGAAGACAGACAAACCAGAGATATCCATTCTTTCTTTGGAAGCAATGGGCAACCAAATTTCAATATTGGAGGTTTTGGGCAGTACCCAATTGGAGAAATTGGTAGGTTTGATGCAGACCAATTCACACCAAGATTTTCAGGCAATGGAGTTTCTCTAACTCTTGGACTTCCACACTGTGAAAACCTCTCTTTATCAGGATCCCACCAAAGCTTCCTTCCCAATCAAAGCATGCATTTAGCAAGAAGGGCAGAAATTGGCAAACCCAATGATTTTGGAGCCATTAATTCCTCTCCCACACCTCACTCTTCCACTGCATTTGATACAATCAACATTCAAAATGGTAAGAGGTTTGCTGCTCAATTGTTACCTGACTTTGTTGCCTAA | 2181 | 46.63 | MATFLQNNSEFQSASDGGLQTLLLMNPGYVQYSDTPPPPQPPPPSHSHPNLLFFNSTHSFSTQNLPHAPPSHTQQFVGIPLPATASPSPTSHSQDHNSHPLNTHHDISALHGFVHRIPHNIWNQIDPSTAAREASRAQQGLSLSLSSQQPPGYSSFRGERDVQSQGQNQNQQPAVSGDENIRISGGSSSSASAVTNGGIQGVLLSSKYLKAAQELLDEVVNVTNNSIKTESPKKMTGNSTKMIGDQSATATGEGSLDAEAEGKRVAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGVGSARTYTALALETISKQFRCLKDAITSQIRAANKSLGEEDCVGKKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGGGSGLAVDKTVSKSNDDSGSKSTAPPETKSPNSKQENSTNQNVLPSISISSSSGGHVRNQPGFMLIGSSSELDGITQGSPKKQRGPEMFHATTHVPFINMDVKPRDEDEEHDHHHHHQQQQHPNHHHLPMKFDEDRQTRDIHSFFGSNGQPNFNIGGFGQYPIGEIGRFDADQFTPRFSGNGVSLTLGLPHCENLSLSGSHQSFLPNQSMHLARRAEIGKPNDFGAINSSPTPHSSTAFDTINIQNGKRFAAQLLPDFVA | 726 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5458923 | 5461517 | + | evm.model.ptg000018l.136 | HCH11g0479 | 553946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 28 | 104 | - | - | |
HCH11g0479 | 726 | Pfam | Homeobox KN domain | 406 | 445 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH11g0479 | 726 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 145 | 499 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH11g0479 | 726 | SMART | prehox3 | 196 | 341 | IPR006563 | - | |
HCH11g0479 | 726 | SMART | HOX_1 | 389 | 453 | IPR001356 | GO:0003677(InterPro) | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 571 | 596 | - | - | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 230 | 260 | - | - | |
HCH11g0479 | 726 | Gene3D | - | 392 | 454 | - | - | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 230 | 253 | - | - | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
HCH11g0479 | 726 | ProSiteProfiles | 'Homeobox' domain profile. | 386 | 449 | IPR001356 | GO:0003677(InterPro) | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 461 | 552 | - | - | |
HCH11g0479 | 726 | FunFam | BEL1-like homeodomain protein 9 | 392 | 454 | - | - | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 49 | 97 | - | - | |
HCH11g0479 | 726 | Pfam | Associated with HOX | 202 | 340 | IPR006563 | - | |
HCH11g0479 | 726 | SUPERFAMILY | Homeodomain-like | 390 | 455 | IPR009057 | - | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 469 | 543 | - | - | |
HCH11g0479 | 726 | Coils | Coil | 273 | 300 | - | - | |
HCH11g0479 | 726 | CDD | homeodomain | 389 | 450 | IPR001356 | GO:0003677(InterPro) | |
HCH11g0479 | 726 | MobiDBLite | consensus disorder prediction | 132 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0479 | HCH-Chr11:5458923 | HCH2g0479 | HCH-Chr2:48310821 | 3.50E-85 | dispersed | |
HCH4g0543 | HCH-Chr4:3530333 | HCH11g0479 | HCH-Chr11:5458923 | 2.90E-42 | transposed | |
HCH5g0533 | HCH-Chr5:3672278 | HCH11g0479 | HCH-Chr11:5458923 | 4.90E-65 | transposed | |
HCH11g0479 | HCH-Chr11:5458923 | HCH2g1297 | HCH-Chr2:55081650 | 1.20E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32554 | PF07526 | POX | 1.10E-49 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0479 | - | - | - | 0.0 |