Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0479 ATGGCGACGTTCCTTCAAAACAATTCTGAATTTCAATCAGCTTCTGATGGTGGCTTACAAACTCTCCTCCTTATGAATCCCGGCTACGTTCAATACTCCGATACGCCGCCGCCGCCTCAGCCTCCTCCGCCTTCTCACTCTCATCCCAACCTTCTTTTCTTCAATTCTACTCATTCCTTCTCTACTCAAAACCTACCTCACGCGCCGCCGTCTCATACTCAGCAATTCGTCGGCATCCCGCTACCCGCGACGGCTTCGCCTTCACCGACCTCTCATTCCCAAGACCATAATTCTCATCCCTTGAATACCCACCATGATATCTCCGCCTTGCATGGCTTTGTCCACCGTATTCCCCATAATATTTGGAACCAAATTGACCCCTCCACGGCGGCGCGTGAAGCCTCACGCGCTCAGCAAGGATTGTCGTTGAGCCTCTCATCTCAGCAGCCGCCGGGATACAGCTCGTTTCGTGGCGAAAGGGATGTTCAATCTCAGGGCCAGAACCAGAACCAACAGCCGGCGGTATCCGGGGACGAAAACATCCGGATTTCCGGTGGATCGTCTTCTTCGGCTTCCGCCGTCACCAATGGCGGAATTCAGGGTGTTTTGCTCAGCTCCAAATACCTCAAGGCAGCACAGGAGCTTCTTGATGAAGTTGTCAATGTCACCAACAACAGCATTAAAACCGAATCCCCGAAAAAGATGACCGGAAATTCTACAAAAATGATCGGCGACCAATCTGCAACGGCTACCGGAGAAGGTTCTTTAGATGCCGAAGCCGAGGGAAAACGCGTCGCGGAACTCACAACCGCGGAAAGACAAGAAATTCAGATGAAGAAAGCAAAACTCATAAACATGCTTGATGAGGTAGAGCAAAGATACAGGCAGTATCATCACCAGATGCAGATAGTAATATCATCATTCGAGCAAGCGGCCGGAGTTGGATCCGCGAGAACATACACGGCATTAGCACTCGAAACGATTTCTAAGCAATTCCGGTGTTTAAAAGATGCCATTACAAGTCAAATTCGAGCAGCAAACAAGAGCTTAGGAGAAGAAGATTGTGTCGGGAAAAAGATCGAAGGTTCGAGACTGAAATTCGTCGATCACCATCTCCGACAACAGCGAGCTCTTCAACAATTGGGAATGATTCAACACAATGCTTGGAGACCTCAACGAGGCTTGCCTGAAAGATCTGTTTCCATACTTCGTGCTTGGCTTTTTGAACACTTTCTCCACCCTTATCCTAAAGATTCAGACAAACATATGCTTGCAAAGCAAACAGGGCTTACTAGGAGCCAGGTATCAAATTGGTTTATAAATGCAAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAGATGTATCTAGAGGAGATAAAGGAGCAAGAACAGAATGGCGGCGGATCAGGGTTGGCGGTAGACAAGACAGTCAGCAAGAGCAATGACGATTCGGGTTCGAAATCGACAGCTCCACCGGAGACGAAAAGTCCGAATTCTAAACAAGAAAACTCCACAAACCAAAATGTGCTTCCTTCCATCTCAATTTCCTCATCTTCTGGAGGACATGTTCGAAACCAACCCGGATTTATGCTCATCGGATCGTCCTCCGAACTCGACGGAATCACACAAGGAAGTCCAAAGAAACAAAGAGGACCTGAAATGTTCCATGCCACCACCCATGTCCCTTTCATAAACATGGATGTGAAGCCGAGAGATGAAGACGAAGAACACGATCATCATCATCATCATCAACAACAACAACATCCTAACCATCATCATCTTCCTATGAAATTTGATGAAGACAGACAAACCAGAGATATCCATTCTTTCTTTGGAAGCAATGGGCAACCAAATTTCAATATTGGAGGTTTTGGGCAGTACCCAATTGGAGAAATTGGTAGGTTTGATGCAGACCAATTCACACCAAGATTTTCAGGCAATGGAGTTTCTCTAACTCTTGGACTTCCACACTGTGAAAACCTCTCTTTATCAGGATCCCACCAAAGCTTCCTTCCCAATCAAAGCATGCATTTAGCAAGAAGGGCAGAAATTGGCAAACCCAATGATTTTGGAGCCATTAATTCCTCTCCCACACCTCACTCTTCCACTGCATTTGATACAATCAACATTCAAAATGGTAAGAGGTTTGCTGCTCAATTGTTACCTGACTTTGTTGCCTAA 2181 46.63 MATFLQNNSEFQSASDGGLQTLLLMNPGYVQYSDTPPPPQPPPPSHSHPNLLFFNSTHSFSTQNLPHAPPSHTQQFVGIPLPATASPSPTSHSQDHNSHPLNTHHDISALHGFVHRIPHNIWNQIDPSTAAREASRAQQGLSLSLSSQQPPGYSSFRGERDVQSQGQNQNQQPAVSGDENIRISGGSSSSASAVTNGGIQGVLLSSKYLKAAQELLDEVVNVTNNSIKTESPKKMTGNSTKMIGDQSATATGEGSLDAEAEGKRVAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGVGSARTYTALALETISKQFRCLKDAITSQIRAANKSLGEEDCVGKKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGGGSGLAVDKTVSKSNDDSGSKSTAPPETKSPNSKQENSTNQNVLPSISISSSSGGHVRNQPGFMLIGSSSELDGITQGSPKKQRGPEMFHATTHVPFINMDVKPRDEDEEHDHHHHHQQQQHPNHHHLPMKFDEDRQTRDIHSFFGSNGQPNFNIGGFGQYPIGEIGRFDADQFTPRFSGNGVSLTLGLPHCENLSLSGSHQSFLPNQSMHLARRAEIGKPNDFGAINSSPTPHSSTAFDTINIQNGKRFAAQLLPDFVA 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5458923 5461517 + evm.model.ptg000018l.136 HCH11g0479 553946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0479 726 MobiDBLite consensus disorder prediction 28 104 - -
HCH11g0479 726 Pfam Homeobox KN domain 406 445 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH11g0479 726 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 145 499 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH11g0479 726 SMART prehox3 196 341 IPR006563 -
HCH11g0479 726 SMART HOX_1 389 453 IPR001356 GO:0003677(InterPro)
HCH11g0479 726 MobiDBLite consensus disorder prediction 571 596 - -
HCH11g0479 726 MobiDBLite consensus disorder prediction 230 260 - -
HCH11g0479 726 Gene3D - 392 454 - -
HCH11g0479 726 MobiDBLite consensus disorder prediction 230 253 - -
HCH11g0479 726 MobiDBLite consensus disorder prediction 32 48 - -
HCH11g0479 726 ProSiteProfiles 'Homeobox' domain profile. 386 449 IPR001356 GO:0003677(InterPro)
HCH11g0479 726 MobiDBLite consensus disorder prediction 461 552 - -
HCH11g0479 726 FunFam BEL1-like homeodomain protein 9 392 454 - -
HCH11g0479 726 MobiDBLite consensus disorder prediction 49 97 - -
HCH11g0479 726 Pfam Associated with HOX 202 340 IPR006563 -
HCH11g0479 726 SUPERFAMILY Homeodomain-like 390 455 IPR009057 -
HCH11g0479 726 MobiDBLite consensus disorder prediction 469 543 - -
HCH11g0479 726 Coils Coil 273 300 - -
HCH11g0479 726 CDD homeodomain 389 450 IPR001356 GO:0003677(InterPro)
HCH11g0479 726 MobiDBLite consensus disorder prediction 132 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0479 HCH-Chr11:5458923 HCH2g0479 HCH-Chr2:48310821 3.50E-85 dispersed
HCH4g0543 HCH-Chr4:3530333 HCH11g0479 HCH-Chr11:5458923 2.90E-42 transposed
HCH5g0533 HCH-Chr5:3672278 HCH11g0479 HCH-Chr11:5458923 4.90E-65 transposed
HCH11g0479 HCH-Chr11:5458923 HCH2g1297 HCH-Chr2:55081650 1.20E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32554 PF07526 POX 1.10E-49 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0479 - - - 0.0