Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0480 ATGGAAGAAATTGAAGTTCCTCAATATTTCCTCTGCCCTATTTCTCTCGAAATCATGAAAGATCCCGTCACCGTTTTAACCGGTATCACTTACGATAGAGAAAGCATCGAGAAATGGATTTACTTGAACAAAAACAATTCTTGTCCGGTGACAAAACAAGTCATCTCCGATTCCGATTATCTTACTCCTAACCATACTCTCCGGCGACTTATTCAAGCTTGGTGTACCATCAATGCTTCTCATGGAGTTGAGAGAATTCCCACTCCAAAACCTCCCGTTGACAAAACCCAGATCGTCAAACTTCTTAAAACTGCCAAATCATCTCCCAATTCTCAATTATCTTGTCTCCGGCGAATCCGTACAATCGCCGGTGAGAGTGAAACTAATAAACGTTGCGTTGAATCTGCTGGAGCTGTTGAGTTTTTAGTTTCCGTTGTTAGCAATTTTGTTTCTTCTGATCCTTTTGAAGAAGCTTCTATTGCTTGTGATGAAGCTTTGAGTACTCTTTATAATCTTCATATTTCCGACGATAAGTTGAATTCTCTCGTCGGGAAAAATAATGGGGAGTTTGTTGATTCGTTGATGGAAGTTATGAAACGGGGTAGCTTTGAATCTAGAGCTTATGCTGTGATGTTTTTGAAATCCATGCTTGAAGCAGCAAACCCTATGAATTTAATAGGTCTAAAGTCTGAATTATTTGTTGAAATAATTCAAATTTTGAAAGATCAGATTTCAAACCAAGCATCAAAAGCTGCAGTACATCTCTTGATTCAAACATGTCCGTGGGGACGGAACCGAGTTAAAGCCGTCGAAGCCGGTGGCGTATCGGTTTCGATTGAGCTTCTTTTAGCTTCACCGGAGAGGAGGTCATCGGAGATGCTATTGACTGCGTTGGATTTTATGTGTGGTTGTGCCGATGGGAGGGCGGCATTGTTGAGTCACGGTGCCGGGATGGCGGTGGTGGCGAAGAAGATTTTGAGGGTTTCTCAAGTAGGAAGTGAGAGAGCTGTGAGAATTCTGAATTCCATTGCAAGATTCTCAGCAAGTCCAATGGTTTTGCAAGAAATGCTTCAATTGGGAATTGTAGCAAAGCTTTGTTTATTGCTTCAAGTTGATGGAGGGAATAAGACTAAGGAGAAAGCAAGGGAGATTCTTAAGTTGCATGCAAGAACATGGAAGAATTCTCCTTGTATTCCTATGAATTTGGTTTCTTCATTTCCTACGAATTAA 1230 40.98 MEEIEVPQYFLCPISLEIMKDPVTVLTGITYDRESIEKWIYLNKNNSCPVTKQVISDSDYLTPNHTLRRLIQAWCTINASHGVERIPTPKPPVDKTQIVKLLKTAKSSPNSQLSCLRRIRTIAGESETNKRCVESAGAVEFLVSVVSNFVSSDPFEEASIACDEALSTLYNLHISDDKLNSLVGKNNGEFVDSLMEVMKRGSFESRAYAVMFLKSMLEAANPMNLIGLKSELFVEIIQILKDQISNQASKAAVHLLIQTCPWGRNRVKAVEAGGVSVSIELLLASPERRSSEMLLTALDFMCGCADGRAALLSHGAGMAVVAKKILRVSQVGSERAVRILNSIARFSASPMVLQEMLQLGIVAKLCLLLQVDGGNKTKEKAREILKLHARTWKNSPCIPMNLVSSFPTN 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5485527 5486756 + evm.model.ptg000018l.135 HCH11g0480 553947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0480 409 Gene3D - 96 395 IPR011989 -
HCH11g0480 409 PANTHER WDSAM1 PROTEIN 2 405 IPR045185 GO:0061630(InterPro)
HCH11g0480 409 SUPERFAMILY ARM repeat 98 385 IPR016024 -
HCH11g0480 409 Pfam U-box domain 6 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH11g0480 409 SUPERFAMILY RING/U-box 3 81 - -
HCH11g0480 409 CDD RING-Ubox_PUB 7 59 IPR045210 -
HCH11g0480 409 FunFam RING-type E3 ubiquitin transferase 1 84 - -
HCH11g0480 409 SMART Ubox_2 9 74 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH11g0480 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
HCH11g0480 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0480 HCH-Chr11:5485527 HCH8g0308 HCH-Chr8:22213946 3.00E-110 dispersed
HCH11g0896 HCH-Chr11:39926611 HCH11g0480 HCH-Chr11:5485527 8.10E-50 transposed
HCH1g0251 HCH-Chr1:41300067 HCH11g0480 HCH-Chr11:5485527 1.70E-50 transposed
HCH9g1187 HCH-Chr9:18222525 HCH11g0480 HCH-Chr11:5485527 1.50E-141 transposed
HCH11g0480 HCH-Chr11:5485527 HCH2g1298 HCH-Chr2:55088827 3.00E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0480 - - - 0.0