Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0480 | ATGGAAGAAATTGAAGTTCCTCAATATTTCCTCTGCCCTATTTCTCTCGAAATCATGAAAGATCCCGTCACCGTTTTAACCGGTATCACTTACGATAGAGAAAGCATCGAGAAATGGATTTACTTGAACAAAAACAATTCTTGTCCGGTGACAAAACAAGTCATCTCCGATTCCGATTATCTTACTCCTAACCATACTCTCCGGCGACTTATTCAAGCTTGGTGTACCATCAATGCTTCTCATGGAGTTGAGAGAATTCCCACTCCAAAACCTCCCGTTGACAAAACCCAGATCGTCAAACTTCTTAAAACTGCCAAATCATCTCCCAATTCTCAATTATCTTGTCTCCGGCGAATCCGTACAATCGCCGGTGAGAGTGAAACTAATAAACGTTGCGTTGAATCTGCTGGAGCTGTTGAGTTTTTAGTTTCCGTTGTTAGCAATTTTGTTTCTTCTGATCCTTTTGAAGAAGCTTCTATTGCTTGTGATGAAGCTTTGAGTACTCTTTATAATCTTCATATTTCCGACGATAAGTTGAATTCTCTCGTCGGGAAAAATAATGGGGAGTTTGTTGATTCGTTGATGGAAGTTATGAAACGGGGTAGCTTTGAATCTAGAGCTTATGCTGTGATGTTTTTGAAATCCATGCTTGAAGCAGCAAACCCTATGAATTTAATAGGTCTAAAGTCTGAATTATTTGTTGAAATAATTCAAATTTTGAAAGATCAGATTTCAAACCAAGCATCAAAAGCTGCAGTACATCTCTTGATTCAAACATGTCCGTGGGGACGGAACCGAGTTAAAGCCGTCGAAGCCGGTGGCGTATCGGTTTCGATTGAGCTTCTTTTAGCTTCACCGGAGAGGAGGTCATCGGAGATGCTATTGACTGCGTTGGATTTTATGTGTGGTTGTGCCGATGGGAGGGCGGCATTGTTGAGTCACGGTGCCGGGATGGCGGTGGTGGCGAAGAAGATTTTGAGGGTTTCTCAAGTAGGAAGTGAGAGAGCTGTGAGAATTCTGAATTCCATTGCAAGATTCTCAGCAAGTCCAATGGTTTTGCAAGAAATGCTTCAATTGGGAATTGTAGCAAAGCTTTGTTTATTGCTTCAAGTTGATGGAGGGAATAAGACTAAGGAGAAAGCAAGGGAGATTCTTAAGTTGCATGCAAGAACATGGAAGAATTCTCCTTGTATTCCTATGAATTTGGTTTCTTCATTTCCTACGAATTAA | 1230 | 40.98 | MEEIEVPQYFLCPISLEIMKDPVTVLTGITYDRESIEKWIYLNKNNSCPVTKQVISDSDYLTPNHTLRRLIQAWCTINASHGVERIPTPKPPVDKTQIVKLLKTAKSSPNSQLSCLRRIRTIAGESETNKRCVESAGAVEFLVSVVSNFVSSDPFEEASIACDEALSTLYNLHISDDKLNSLVGKNNGEFVDSLMEVMKRGSFESRAYAVMFLKSMLEAANPMNLIGLKSELFVEIIQILKDQISNQASKAAVHLLIQTCPWGRNRVKAVEAGGVSVSIELLLASPERRSSEMLLTALDFMCGCADGRAALLSHGAGMAVVAKKILRVSQVGSERAVRILNSIARFSASPMVLQEMLQLGIVAKLCLLLQVDGGNKTKEKAREILKLHARTWKNSPCIPMNLVSSFPTN | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5485527 | 5486756 | + | evm.model.ptg000018l.135 | HCH11g0480 | 553947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0480 | 409 | Gene3D | - | 96 | 395 | IPR011989 | - | |
HCH11g0480 | 409 | PANTHER | WDSAM1 PROTEIN | 2 | 405 | IPR045185 | GO:0061630(InterPro) | |
HCH11g0480 | 409 | SUPERFAMILY | ARM repeat | 98 | 385 | IPR016024 | - | |
HCH11g0480 | 409 | Pfam | U-box domain | 6 | 76 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH11g0480 | 409 | SUPERFAMILY | RING/U-box | 3 | 81 | - | - | |
HCH11g0480 | 409 | CDD | RING-Ubox_PUB | 7 | 59 | IPR045210 | - | |
HCH11g0480 | 409 | FunFam | RING-type E3 ubiquitin transferase | 1 | 84 | - | - | |
HCH11g0480 | 409 | SMART | Ubox_2 | 9 | 74 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH11g0480 | 409 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | IPR013083 | - | |
HCH11g0480 | 409 | ProSiteProfiles | U-box domain profile. | 5 | 81 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0480 | HCH-Chr11:5485527 | HCH8g0308 | HCH-Chr8:22213946 | 3.00E-110 | dispersed | |
HCH11g0896 | HCH-Chr11:39926611 | HCH11g0480 | HCH-Chr11:5485527 | 8.10E-50 | transposed | |
HCH1g0251 | HCH-Chr1:41300067 | HCH11g0480 | HCH-Chr11:5485527 | 1.70E-50 | transposed | |
HCH9g1187 | HCH-Chr9:18222525 | HCH11g0480 | HCH-Chr11:5485527 | 1.50E-141 | transposed | |
HCH11g0480 | HCH-Chr11:5485527 | HCH2g1298 | HCH-Chr2:55088827 | 3.00E-94 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0480 | - | - | - | 0.0 |