Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0485 ATGAACGATCTTTTCTCTTCTCGTTCATTCCCCCGCGAAACCCACGCCGTGGAAATGTCAAACAACTCCTCTTCCCCTACCGCCGTCAATCTCGACAAATTCTTCGACGATGTTGAATCCGTTAAAGATGAGCTGAAGGAACTTGATCAGTTGTACCAGAATCTTCATGATTCTCATGAACAAAGCAAAACCCTTCACAATGCTAAAGCTGTTAAAGACTTGCGATCTCGTATGGATTCTGATGTTTCTCTTTCTTTGAAGAAAGCTAAGTTGATTAAGGTCAGATTAGAGGCTCTTGATCGTTCTAATGCCGCTAATCGGAGCTTGCCCGGTTGCGGTCCGGGTTCGTCTTCTGATCGGACTAGAACTTCTGTTGTTAATGGATTGAGGAAGAAGTTGCAGGATTCTATGGAGAGTTTTAATAATTTGAGGCAGCAGATCTCGTCGGAGTATCGAGAGACGGTCCAGCGACGGTATTTCACAGTCACCGGAGAAAATCCAGATGAGAAGACTATTGATGTCTTGATATCTACTGGTGAAAGTGAGACTTTCTTGCAGAAAGCCATTCAAGAACAAGGTAGGGGAAGAATTTTAGACACCATAACAGAGATTCAGGAGAGGCATGGTGCAGTAAAAGACTTGGAAAGGAACCTCAAGGAGCTGCACCAAGTTTTCTTGGACATGGCAGTCTTGGTGCAGGCTCAAGGCGAGCAACTGGATGATATCGAGAGCCAGGTGAACCGGGCTCATTCCTTCGTAAGAGGCGGCACTCAGCAGCTACAGACAGCCAGAGTTTACCAGAAAAACACCAGGAAATGGACTTGCATTGCCATCATTATTTTGCTGATCATAGTCTTGGTGATTGTCCTCAGTCTGCAGCCATGGAAGCATAGTGGCGGCGGCGGCGGCGGCGGTGGCGGTGGTGGTAATGGTGGTGGTACTGGCACTCCTACAGGTGGTAGTACTGGTACTCCTCCCAGTGTTGGTACCCCCGGTGGACAGTAG 1005 47.66 MNDLFSSRSFPRETHAVEMSNNSSSPTAVNLDKFFDDVESVKDELKELDQLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLSLKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTITEIQERHGAVKDLERNLKELHQVFLDMAVLVQAQGEQLDDIESQVNRAHSFVRGGTQQLQTARVYQKNTRKWTCIAIIILLIIVLVIVLSLQPWKHSGGGGGGGGGGGNGGGTGTPTGGSTGTPPSVGTPGGQ 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5699683 5701232 + evm.model.ptg000018l.130 HCH11g0485 553952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0485 334 MobiDBLite consensus disorder prediction 299 334 - -
HCH11g0485 334 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
HCH11g0485 334 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH11g0485 334 SMART tSNARE_6 196 263 IPR000727 -
HCH11g0485 334 FunFam Syntaxin 132 194 293 - -
HCH11g0485 334 CDD SNARE_syntaxin1-like 200 262 - -
HCH11g0485 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
HCH11g0485 334 PANTHER SYNTAXIN 33 282 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH11g0485 334 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
HCH11g0485 334 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
HCH11g0485 334 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
HCH11g0485 334 Pfam SNARE domain 237 289 IPR000727 -
HCH11g0485 334 MobiDBLite consensus disorder prediction 1 24 - -
HCH11g0485 334 Gene3D - 197 293 - -
HCH11g0485 334 MobiDBLite consensus disorder prediction 314 334 - -
HCH11g0485 334 Coils Coil 31 58 - -
HCH11g0485 334 Coils Coil 126 150 - -
HCH11g0485 334 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH11g0485 334 Gene3D - 29 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0485 HCH-Chr11:5699683 HCH9g1199 HCH-Chr9:19151029 6.00E-109 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0485 K08486 - csv:101208931 518.85