Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0491 ATGAACAACTTCACCGACTCCGACCGACCGCCTTCTTCCAACGGCGGCATCGGTGGTTTTCCCTACGTTATCGGAATCTCAGCCGGAATTCTCCTCCTCCTCACCACCTTAACCATCATTTCCTACATCTGCACAAGAATCTACGTTCCACAGCCATCTCCAGCAATCCGATCAAACACCACCAATCGTCGCTCACTAGAAACCCGAAACCGGGATCACTCCGTTATCGACGTAGGAGTAGAGGGTCTTGAAGAGCAAACCATTGAGAGCTATCCCAAGATGATGTACTCGGAAACCGGCGCCGTCGCCGCCAATTGTTGTTCTATTTGTTTGGCGGATTATAAAAGTGATGATGTATTGCGACTGCTGCCTGATTGCAGTCATCTTTTCCACAGCAAATGCGTTGACCCTTGGTTGCGGCTGAATCCGAGCTGCCCGGTTTGTAGAGCGTCTCCTGCGCCGACGCCGCTATCGACTCCTCTGGCGGAGGTGGTCCCGTTGACAAATAGACGGAGTTGA 519 52.22 MNNFTDSDRPPSSNGGIGGFPYVIGISAGILLLLTTLTIISYICTRIYVPQPSPAIRSNTTNRRSLETRNRDHSVIDVGVEGLEEQTIESYPKMMYSETGAVAANCCSICLADYKSDDVLRLLPDCSHLFHSKCVDPWLRLNPSCPVCRASPAPTPLSTPLAEVVPLTNRRS 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5853283 5853801 + evm.model.ptg000018l.124 HCH11g0491 553958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0491 172 CDD RING-H2_PA-TM-RING 106 149 - -
HCH11g0491 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
HCH11g0491 172 SMART ring_2 107 148 IPR001841 -
HCH11g0491 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 166 IPR045899 -
HCH11g0491 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
HCH11g0491 172 SUPERFAMILY RING/U-box 87 153 - -
HCH11g0491 172 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0491 HCH-Chr11:5853283 HCH9g1200 HCH-Chr9:19287052 5.40E-45 dispersed
HCH11g0491 HCH-Chr11:5853283 HCH13g1105 HCH-Chr13:36189755 8.70E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0491 - - - 0.0