Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0554 ATGGAGCTTGCTCTTAGCCTTGGAGATACTCCCAAGCCTTTTGTTTTCCTTAATAACAAAACTCCCAAGATTTCTAATACTAATAATATGGCTCTTGGGTTTTGCGTTGGATTGGCTAGTCATTCAGCTTCTGGTTCTGGTTCCAATCATTCTGAAGAAAGAAGAGAAATCCATGAAAATGGTGAAGATGAAGCAGATGAAGATGATGATGAAGAAGAAGACATAACGGTCCCTGTTTCAGATCCACCGATTCAGCTTGATCTTCTTCCTTTGGCTCCTGTTCCTCGTAACCAGTCTTCTTCTCACTTCCGATTTCCATGGCTTTCTGATCACTTGATGCCTGAACTGGGATTTTCAGATGGAGCAGAAAGAGTTGTAGACGTGAACCGGTTACCGGTGGTGGCGATGGAGGAGACGGCGGACGATAGGGCGGCTTTGTCGTCTCCGAACAGCACGGTTTCTTCATTTCAGATGGATTTTGGGGTCAGAAATGGGGGAAGAAGTAAGAGAGATTTTGAGGTTGAGACTGAGAGAGCTTCCTCAAGAGTTAGTGATGATGACGAGAATGGATCAGCAAGGAAAAAACTCAGACTTTCTAAAGATCAGTCTGCTTTTCTTGAAGAGAGCTTTAAAGAACACAGCACTCTCAATCCTAAGCAGAAGTTGGCTCTAGCAAAACAGCTAAATCTGCGACCTCGCCAAGTGGAAGTATGGTTTCAAAATAGAAGAGCAAGGACAAAGTTGAAACAGACAGAAGTGGATTGTGAGTATTTAAGGAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAGAAAGAACTGCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCTTTCTACATGCAGCTTCCCGCCACCACTCTCACTATGTGCCCCTCATGTGAGCGTGTCGCCACCGCTACTCCCGCCTCAGCCGCCACCGCTACTGCAGCCAAACAGACCCCCGCCGCTGCCGCTAACTCGAACCCTTCTGCTCTTTGTCTTGCCAAACCACCCAGGATCTTCCCTTTTCCTCACTCCCAATCCCACTTGCACCAAACTGCCTCATGA 1077 46.05 MELALSLGDTPKPFVFLNNKTPKISNTNNMALGFCVGLASHSASGSGSNHSEERREIHENGEDEADEDDDEEEDITVPVSDPPIQLDLLPLAPVPRNQSSSHFRFPWLSDHLMPELGFSDGAERVVDVNRLPVVAMEETADDRAALSSPNSTVSSFQMDFGVRNGGRSKRDFEVETERASSRVSDDDENGSARKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATATPASAATATAAKQTPAAAANSNPSALCLAKPPRIFPFPHSQSHLHQTAS 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7771367 7773117 - evm.model.ptg000018l.61 HCH11g0554 554021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0554 358 MobiDBLite consensus disorder prediction 167 195 - -
HCH11g0554 358 Pfam Homeobox associated leucine zipper 249 283 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0554 358 CDD homeodomain 193 250 IPR001356 GO:0003677(InterPro)
HCH11g0554 358 Pfam HD-ZIP protein N terminus 124 156 IPR006712 GO:0005634(InterPro)
HCH11g0554 358 Pfam Homeodomain 193 247 IPR001356 GO:0003677(InterPro)
HCH11g0554 358 SUPERFAMILY Homeodomain-like 191 258 IPR009057 -
HCH11g0554 358 ProSitePatterns 'Homeobox' domain signature. 224 247 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH11g0554 358 MobiDBLite consensus disorder prediction 62 77 - -
HCH11g0554 358 FunFam Homeobox-leucine zipper protein 18 179 254 - -
HCH11g0554 358 MobiDBLite consensus disorder prediction 42 86 - -
HCH11g0554 358 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 325 IPR050762 -
HCH11g0554 358 ProSiteProfiles 'Homeobox' domain profile. 189 249 IPR001356 GO:0003677(InterPro)
HCH11g0554 358 SMART HOX_1 191 253 IPR001356 GO:0003677(InterPro)
HCH11g0554 358 SMART halz 249 292 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH11g0554 358 Coils Coil 255 285 - -
HCH11g0554 358 Gene3D - 197 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1305 HCH-Chr10:45549895 HCH11g0554 HCH-Chr11:7771367 1.50E-34 dispersed
HCH11g0554 HCH-Chr11:7771367 HCH6g1036 HCH-Chr6:45096222 9.80E-57 dispersed
HCH11g0554 HCH-Chr11:7771367 HCH4g1224 HCH-Chr4:8310070 3.20E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32562 PF00046 Homeodomain 1.30E-15 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0554 K09338 - vvi:100265773 394.045