Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0555 | ATGGGTGATGAAACATCTGATTCAATGAATCTTGATTTGAATTTGGGTCCTATTCCAGAGAGACCATCAAGTCCAATTTCTAATGAAGCTGTGAATTTTGTTTTGACTGAGGATCATGCTCGGAGATTTGGGGAAGCTATGAGGCTTAGAACTCGACATCGGTGGAGAAGGCGTCGAGTCCAAATTCCTTCTGAGACTCCGGATATTTCAATGGAATTGAATGAAATTATGGTTAATTCAGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACAGCTGAGGAAAGGAACGATGAGGCAGGGAAAACCTGTGAAATTAACAATGAAGATTTGGAAGATGATAAGGAAGAGAATAAGAGTGATGTTGAAAAGGGTAGTGATAGTGATGGGAGTTTTTTTGATTGCAATATATGTCTGGACTTGGCTAGAGACCCTGTTGTAACCTGTTGTGGTCATCTATACTGCTGGCCGTGTCTTTATCGGTGGTTACATCTTCATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACTAAGAACGTGACTCCAATTTATGGGCGTGGTAGCAATTCCCGTGTAATGGATGAGGATGCTACTCTTAAGATTCCTCTAAGACCTCATGCACGGAAGGTTGAAAGCTTGAGGCAAACCATCCAGAGGACTGCATTGCCTTTCCCAGTGGAGGAGATGATGCGTCGTCTGGGAAACAGATTTGATTTCAATCGGGAGTTGGATCAACCACCAGAGCCGGATGGTTCACATGAAATAATTGGTAGATCACCCTATTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAGATTCCATTGCCACCTCATGATGAAGTAGGAGATTTTGCACAGACAGATATATCTGGCATTGAGGTTGGGGAAACACGTTTTCAGTCTCTTCCAGTGCTTCGATCACTATTACACAGAACAAGAGTTTCTTCTATTACTTCTGCATTTAATTCTGCTGAAAGGCTTCCAGATGGTTTTCTATATAATGATCCACTCATTACTAGAAATCAAGAGCAGCCTCCACCTGTTGAGGACAGAGATTCTTTTTCTAGCATTGCTGCAGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTGTCTCTTTCAACATCCTCCTCTAGAAGGAGAAATGACGCCTTACAGGTTTCTGACGTGGACAGTGGAAACTCTCGGGCTCCCAGGAGGAGAAGATTGGCTTGA | 1272 | 42.53 | MGDETSDSMNLDLNLGPIPERPSSPISNEAVNFVLTEDHARRFGEAMRLRTRHRWRRRRVQIPSETPDISMELNEIMVNSGNGNSLQPLQAGEGSITAEERNDEAGKTCEINNEDLEDDKEENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSNSRVMDEDATLKIPLRPHARKVESLRQTIQRTALPFPVEEMMRRLGNRFDFNRELDQPPEPDGSHEIIGRSPYLLNRILTSRGIRREQIPLPPHDEVGDFAQTDISGIEVGETRFQSLPVLRSLLHRTRVSSITSAFNSAERLPDGFLYNDPLITRNQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDALQVSDVDSGNSRAPRRRRLA | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7851893 | 7853164 | - | evm.model.ptg000018l.60 | HCH11g0555 | 554022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0555 | 423 | SUPERFAMILY | RING/U-box | 136 | 193 | - | - | |
HCH11g0555 | 423 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 200 | IPR013083 | - | |
HCH11g0555 | 423 | FunFam | Zinc finger family protein | 121 | 194 | - | - | |
HCH11g0555 | 423 | MobiDBLite | consensus disorder prediction | 392 | 412 | - | - | |
HCH11g0555 | 423 | ProSitePatterns | Zinc finger RING-type signature. | 155 | 164 | IPR017907 | - | |
HCH11g0555 | 423 | Pfam | Zinc finger, C3HC4 type (RING finger) | 140 | 180 | IPR018957 | GO:0046872(InterPro) | |
HCH11g0555 | 423 | CDD | RING-HC_AtRMA-like | 138 | 181 | - | - | |
HCH11g0555 | 423 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 181 | IPR001841 | - | |
HCH11g0555 | 423 | MobiDBLite | consensus disorder prediction | 98 | 132 | - | - | |
HCH11g0555 | 423 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
HCH11g0555 | 423 | MobiDBLite | consensus disorder prediction | 392 | 423 | - | - | |
HCH11g0555 | 423 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 106 | 357 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
HCH11g0555 | 423 | SMART | ring_2 | 140 | 180 | IPR001841 | - | |
HCH11g0555 | 423 | MobiDBLite | consensus disorder prediction | 98 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0555 | HCH-Chr11:7851893 | HCH6g0325 | HCH-Chr6:5038868 | 4.30E-35 | dispersed | |
HCH11g0555 | HCH-Chr11:7851893 | HCH4g0696 | HCH-Chr4:4518971 | 2.40E-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0555 | K10666 | - | csv:101220497 | 680.633 |