Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0555 ATGGGTGATGAAACATCTGATTCAATGAATCTTGATTTGAATTTGGGTCCTATTCCAGAGAGACCATCAAGTCCAATTTCTAATGAAGCTGTGAATTTTGTTTTGACTGAGGATCATGCTCGGAGATTTGGGGAAGCTATGAGGCTTAGAACTCGACATCGGTGGAGAAGGCGTCGAGTCCAAATTCCTTCTGAGACTCCGGATATTTCAATGGAATTGAATGAAATTATGGTTAATTCAGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACAGCTGAGGAAAGGAACGATGAGGCAGGGAAAACCTGTGAAATTAACAATGAAGATTTGGAAGATGATAAGGAAGAGAATAAGAGTGATGTTGAAAAGGGTAGTGATAGTGATGGGAGTTTTTTTGATTGCAATATATGTCTGGACTTGGCTAGAGACCCTGTTGTAACCTGTTGTGGTCATCTATACTGCTGGCCGTGTCTTTATCGGTGGTTACATCTTCATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACTAAGAACGTGACTCCAATTTATGGGCGTGGTAGCAATTCCCGTGTAATGGATGAGGATGCTACTCTTAAGATTCCTCTAAGACCTCATGCACGGAAGGTTGAAAGCTTGAGGCAAACCATCCAGAGGACTGCATTGCCTTTCCCAGTGGAGGAGATGATGCGTCGTCTGGGAAACAGATTTGATTTCAATCGGGAGTTGGATCAACCACCAGAGCCGGATGGTTCACATGAAATAATTGGTAGATCACCCTATTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAGATTCCATTGCCACCTCATGATGAAGTAGGAGATTTTGCACAGACAGATATATCTGGCATTGAGGTTGGGGAAACACGTTTTCAGTCTCTTCCAGTGCTTCGATCACTATTACACAGAACAAGAGTTTCTTCTATTACTTCTGCATTTAATTCTGCTGAAAGGCTTCCAGATGGTTTTCTATATAATGATCCACTCATTACTAGAAATCAAGAGCAGCCTCCACCTGTTGAGGACAGAGATTCTTTTTCTAGCATTGCTGCAGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTGTCTCTTTCAACATCCTCCTCTAGAAGGAGAAATGACGCCTTACAGGTTTCTGACGTGGACAGTGGAAACTCTCGGGCTCCCAGGAGGAGAAGATTGGCTTGA 1272 42.53 MGDETSDSMNLDLNLGPIPERPSSPISNEAVNFVLTEDHARRFGEAMRLRTRHRWRRRRVQIPSETPDISMELNEIMVNSGNGNSLQPLQAGEGSITAEERNDEAGKTCEINNEDLEDDKEENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSNSRVMDEDATLKIPLRPHARKVESLRQTIQRTALPFPVEEMMRRLGNRFDFNRELDQPPEPDGSHEIIGRSPYLLNRILTSRGIRREQIPLPPHDEVGDFAQTDISGIEVGETRFQSLPVLRSLLHRTRVSSITSAFNSAERLPDGFLYNDPLITRNQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDALQVSDVDSGNSRAPRRRRLA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7851893 7853164 - evm.model.ptg000018l.60 HCH11g0555 554022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0555 423 SUPERFAMILY RING/U-box 136 193 - -
HCH11g0555 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 200 IPR013083 -
HCH11g0555 423 FunFam Zinc finger family protein 121 194 - -
HCH11g0555 423 MobiDBLite consensus disorder prediction 392 412 - -
HCH11g0555 423 ProSitePatterns Zinc finger RING-type signature. 155 164 IPR017907 -
HCH11g0555 423 Pfam Zinc finger, C3HC4 type (RING finger) 140 180 IPR018957 GO:0046872(InterPro)
HCH11g0555 423 CDD RING-HC_AtRMA-like 138 181 - -
HCH11g0555 423 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
HCH11g0555 423 MobiDBLite consensus disorder prediction 98 132 - -
HCH11g0555 423 MobiDBLite consensus disorder prediction 1 24 - -
HCH11g0555 423 MobiDBLite consensus disorder prediction 392 423 - -
HCH11g0555 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 106 357 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
HCH11g0555 423 SMART ring_2 140 180 IPR001841 -
HCH11g0555 423 MobiDBLite consensus disorder prediction 98 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0555 K10666 - - csv:101220497 680.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0555 HCH-Chr11:7851893 HCH6g0325 HCH-Chr6:5038868 4.30E-35 dispersed
HCH11g0555 HCH-Chr11:7851893 HCH4g0696 HCH-Chr4:4518971 2.40E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0595 . 83 569 C3H Transcription Factor Family AT2G31510 77.0 3.6e-235 810.8
HCH10g0037 . 80 570 C3H Transcription Factor Family AT2G31510 75.8 6.6e-229 790.0
HCH4g0689 . 54 499 C3H Transcription Factor Family AT2G31510 51.9 7.7e-137 484.2
HCH4g0690 . 54 497 C3H Transcription Factor Family AT2G31510 50.7 7.7e-137 484.2
HCH10g0595 . 52 543 C3H Transcription Factor Family AT2G31770 56.5 2.2e-169 592.4
HCH10g0037 . 48 540 C3H Transcription Factor Family AT2G31770 56.7 3.8e-169 591.7
HCH10g0595 . 66 528 C3H Transcription Factor Family AT2G31760 58.7 4.7e-169 591.3
HCH10g0037 . 63 540 C3H Transcription Factor Family AT2G31760 56.9 1.5e-167 586.3
HCH4g0689 . 40 499 C3H Transcription Factor Family AT2G31760 50.5 9.9e-135 477.2
HCH9g1200 . 7 161 C3H Transcription Factor Family AT5G06490 52.7 1.3e-45 179.9
HCH9g1200 . 7 161 C3H Transcription Factor Family AT5G06490 52.7 1.3e-45 179.9
HCH13g0661 . 1 226 C3H Transcription Factor Family AT3G02290 62.0 4.0e-75 278.1
HCH8g0799 . 1 304 C3H Transcription Factor Family AT1G11020 73.8 4.1e-131 464.5
HCH6g0012 . 65 224 C3H Transcription Factor Family AT1G50440 74.4 6.8e-67 250.8
HCH14g0085 . 1 362 C3H Transcription Factor Family AT5G08750 62.0 4.2e-124 441.4
HCH11g0998 . 1 411 C3H Transcription Factor Family AT3G16090 74.4 1.1e-167 586.6
HCH12g1519 . 31 185 C3H Transcription Factor Family AT1G22510 69.0 6.6e-58 220.7
HCH13g0661 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 1.3e-71 266.9
HCH4g0696 . 21 226 C3H Transcription Factor Family AT1G19310 71.6 5.4e-85 310.8
HCH14g0215 . 16 226 C3H Transcription Factor Family AT1G19310 57.7 3.3e-66 248.4
HCH12g1519 . 35 185 C3H Transcription Factor Family AT1G72175 70.9 7.1e-57 216.9
HCH7g1635 . 1 188 C3H Transcription Factor Family AT4G00335 52.9 7.3e-51 197.2
HCH14g0519 . 1 322 C3H Transcription Factor Family AT2G22120 80.9 1.3e-157 552.7
HCH4g0178 . 1 167 C3H Transcription Factor Family AT5G07040 57.5 3.3e-44 174.9
HCH8g1191 . 1 389 C3H Transcription Factor Family AT1G18470 77.1 7.5e-181 630.2
HCH10g1238 . 12 389 C3H Transcription Factor Family AT1G18470 64.5 6.9e-142 500.7
HCH10g1240 . 11 389 C3H Transcription Factor Family AT1G18470 62.5 5.1e-137 484.6
HCH10g1295 . 124 384 C3H Transcription Factor Family AT1G68200 53.0 8.4e-49 191.0
HCH10g0595 . 52 543 C3H Transcription Factor Family AT2G31770 56.5 2.2e-169 592.4
HCH10g0037 . 48 540 C3H Transcription Factor Family AT2G31770 56.7 3.8e-169 591.7
HCH10g0595 . 66 528 C3H Transcription Factor Family AT2G31760 58.7 4.7e-169 591.3
HCH10g0037 . 63 540 C3H Transcription Factor Family AT2G31760 56.9 1.5e-167 586.3
HCH4g0689 . 40 499 C3H Transcription Factor Family AT2G31760 50.5 9.9e-135 477.2
HCH5g0065 . 2 347 C3H Transcription Factor Family AT2G30580 53.0 5.6e-86 314.7
HCH12g1319 . 44 280 C3H Transcription Factor Family AT5G55970 66.4 1.5e-93 339.7
HCH12g1317 . 45 275 C3H Transcription Factor Family AT5G55970 67.7 2.0e-93 339.3
HCH14g0085 . 1 362 C3H Transcription Factor Family AT5G63780 58.0 3.0e-117 418.7
HCH11g0555 . 1 422 C3H Transcription Factor Family AT3G58030 52.2 1.2e-104 377.1
HCH12g1319 . 50 346 C3H Transcription Factor Family AT4G26580 65.6 5.3e-113 404.4
HCH12g1317 . 46 330 C3H Transcription Factor Family AT4G26580 65.5 4.5e-112 401.4
HCH12g1618 . 21 160 C3H Transcription Factor Family AT4G10150 57.6 4.8e-44 174.9
HCH4g1193 . 1 246 C3H Transcription Factor Family AT3G63530 51.0 1.2e-66 250.0
HCH9g0858 . 1 466 C3H Transcription Factor Family AT5G01960 69.9 6.0e-170 594.0
HCH1g0256 . 24 464 C3H Transcription Factor Family AT5G01960 61.9 5.6e-152 534.3
HCH7g0359 . 1 144 C3H Transcription Factor Family AT2G04240 59.5 5.9e-41 164.1
HCH2g1337 . 1 240 C3H Transcription Factor Family AT5G19430 51.4 1.2e-59 226.9
HCH2g1337 . 17 240 C3H Transcription Factor Family AT5G12310 58.8 8.8e-60 227.3
HCH13g0528 . 7 190 C3H Transcription Factor Family AT5G05830 59.4 2.0e-54 209.1
HCH11g0131 . 70 231 C3H Transcription Factor Family AT5G05830 59.3 4.2e-52 201.4
HCH9g0739 . 72 208 C3H Transcription Factor Family AT5G05830 57.7 9.0e-39 157.1
HCH13g0661 . 1 226 C3H Transcription Factor Family AT5G15790 57.8 1.4e-72 269.6
HCH9g0329 . 1 207 C3H Transcription Factor Family AT5G15790 51.9 8.3e-57 217.2
HCH13g0498 . 1 277 C3H Transcription Factor Family AT3G55530 80.6 2.9e-117 418.3
HCH4g0944 . 1 273 C3H Transcription Factor Family AT1G63900 74.5 3.2e-116 414.8
HCH7g1487 . 10 393 C3H Transcription Factor Family AT2G44580 54.7 3.8e-123 438.3
HCH8g1286 . 69 217 C3H Transcription Factor Family AT1G74410 57.0 6.8e-48 187.6
HCH4g0696 . 17 149 C3H Transcription Factor Family AT1G74990 57.8 1.9e-40 162.2
HCH12g0447 . 3 313 C3H Transcription Factor Family AT5G20910 64.6 5.8e-114 407.5
HCH11g0998 . 119 419 C3H Transcription Factor Family AT1G65040 67.7 1.6e-106 382.9
HCH14g0215 . 17 228 C3H Transcription Factor Family AT2G23780 61.6 8.1e-73 270.4
HCH4g0696 . 6 228 C3H Transcription Factor Family AT2G23780 57.0 4.2e-69 258.1
HCH9g0968 . 26 452 C3H Transcription Factor Family AT3G10810 51.6 7.6e-84 308.1
HCH5g0530 . 1 166 C3H Transcription Factor Family AT1G63840 57.0 1.2e-46 183.0
HCH13g1115 . 1 157 C3H Transcription Factor Family AT1G63840 52.5 1.4e-42 169.5
HCH10g1364 . 1 335 C3H Transcription Factor Family AT1G68070 61.6 1.2e-117 419.9
HCH7g1596 . 49 376 C3H Transcription Factor Family AT1G68070 50.5 7.9e-88 320.9
HCH12g0043 . 4 174 C3H Transcription Factor Family AT1G76410 55.9 1.0e-49 193.4
HCH13g1292 . 1 188 C3H Transcription Factor Family AT1G76410 50.5 2.6e-45 178.7
HCH4g0398 . 1 413 C3H Transcription Factor Family AT1G80400 55.6 4.3e-117 418.3
HCH10g0595 . 83 569 C3H Transcription Factor Family AT2G31510 77.0 3.6e-235 810.8
HCH10g0037 . 80 570 C3H Transcription Factor Family AT2G31510 75.8 6.6e-229 790.0
HCH4g0689 . 54 499 C3H Transcription Factor Family AT2G31510 51.9 7.7e-137 484.2
HCH4g0690 . 54 497 C3H Transcription Factor Family AT2G31510 50.7 7.7e-137 484.2
HCH9g1200 . 6 160 C3H Transcription Factor Family AT2G35910 63.0 5.2e-53 204.5
HCH11g0491 . 1 169 C3H Transcription Factor Family AT2G35910 54.8 6.8e-45 177.6
HCH9g1156 . 1 306 C3H Transcription Factor Family AT2G41980 81.5 3.4e-151 531.2
HCH2g1428 . 12 317 C3H Transcription Factor Family AT2G41980 70.3 2.8e-129 458.4
HCH11g1318 . 39 315 C3H Transcription Factor Family AT2G41980 76.5 6.3e-129 457.2
HCH1g0636 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 1.3e-126 449.5
HCH10g1186 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 2.2e-126 448.7
HCH10g0167 . 57 315 C3H Transcription Factor Family AT2G41980 73.7 1.6e-119 426.0
HCH7g1169 . 119 378 C3H Transcription Factor Family AT3G06140 65.9 4.8e-96 348.2
HCH11g0276 . 33 331 C3H Transcription Factor Family AT3G09770 59.7 6.2e-85 311.2
HCH10g1294 . 1 154 C3H Transcription Factor Family AT1G15100 55.8 2.4e-39 158.7
HCH9g0020 . 137 665 C3H Transcription Factor Family AT3G26730 56.8 4.2e-171 598.6
HCH3g0333 . 58 352 C3H Transcription Factor Family AT3G47990 72.8 7.6e-127 450.3
HCH8g1380 . 58 371 C3H Transcription Factor Family AT3G47990 69.6 1.3e-126 449.5
HCH6g1379 . 8 190 C3H Transcription Factor Family AT5G17600 51.6 7.6e-49 191.4
HCH12g0043 . 4 181 C3H Transcription Factor Family AT1G20823 56.3 1.6e-53 206.1
HCH13g1292 . 1 186 C3H Transcription Factor Family AT1G20823 51.3 2.2e-42 169.1
HCH13g1327 . 20 235 C3H Transcription Factor Family AT5G66070 76.9 8.2e-78 287.0
HCH11g0231 . 9 286 C3H Transcription Factor Family AT5G02750 50.3 1.7e-64 243.0
HCH8g1191 . 5 467 C3H Transcription Factor Family AT1G73950 72.4 7.5e-200 693.3
HCH10g1238 . 12 467 C3H Transcription Factor Family AT1G73950 61.0 1.4e-158 556.2
HCH10g1240 . 12 467 C3H Transcription Factor Family AT1G73950 60.3 1.6e-157 552.7
HCH6g0528 . 1 105 C3H Transcription Factor Family AT1G73950 63.0 1.4e-36 151.0
HCH3g0939 . 1 105 C3H Transcription Factor Family AT1G73950 62.0 1.8e-36 150.6
HCH12g1618 . 21 161 C3H Transcription Factor Family AT1G33480 58.9 1.7e-42 169.9
HCH10g1364 . 3 233 C3H Transcription Factor Family AT2G01735 56.1 2.0e-67 252.7
HCH6g0945 . 61 270 C3H Transcription Factor Family AT2G01735 52.4 4.8e-50 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006794 2 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37