Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0555 ATGGGTGATGAAACATCTGATTCAATGAATCTTGATTTGAATTTGGGTCCTATTCCAGAGAGACCATCAAGTCCAATTTCTAATGAAGCTGTGAATTTTGTTTTGACTGAGGATCATGCTCGGAGATTTGGGGAAGCTATGAGGCTTAGAACTCGACATCGGTGGAGAAGGCGTCGAGTCCAAATTCCTTCTGAGACTCCGGATATTTCAATGGAATTGAATGAAATTATGGTTAATTCAGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACAGCTGAGGAAAGGAACGATGAGGCAGGGAAAACCTGTGAAATTAACAATGAAGATTTGGAAGATGATAAGGAAGAGAATAAGAGTGATGTTGAAAAGGGTAGTGATAGTGATGGGAGTTTTTTTGATTGCAATATATGTCTGGACTTGGCTAGAGACCCTGTTGTAACCTGTTGTGGTCATCTATACTGCTGGCCGTGTCTTTATCGGTGGTTACATCTTCATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACTAAGAACGTGACTCCAATTTATGGGCGTGGTAGCAATTCCCGTGTAATGGATGAGGATGCTACTCTTAAGATTCCTCTAAGACCTCATGCACGGAAGGTTGAAAGCTTGAGGCAAACCATCCAGAGGACTGCATTGCCTTTCCCAGTGGAGGAGATGATGCGTCGTCTGGGAAACAGATTTGATTTCAATCGGGAGTTGGATCAACCACCAGAGCCGGATGGTTCACATGAAATAATTGGTAGATCACCCTATTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAGATTCCATTGCCACCTCATGATGAAGTAGGAGATTTTGCACAGACAGATATATCTGGCATTGAGGTTGGGGAAACACGTTTTCAGTCTCTTCCAGTGCTTCGATCACTATTACACAGAACAAGAGTTTCTTCTATTACTTCTGCATTTAATTCTGCTGAAAGGCTTCCAGATGGTTTTCTATATAATGATCCACTCATTACTAGAAATCAAGAGCAGCCTCCACCTGTTGAGGACAGAGATTCTTTTTCTAGCATTGCTGCAGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTGTCTCTTTCAACATCCTCCTCTAGAAGGAGAAATGACGCCTTACAGGTTTCTGACGTGGACAGTGGAAACTCTCGGGCTCCCAGGAGGAGAAGATTGGCTTGA 1272 42.53 MGDETSDSMNLDLNLGPIPERPSSPISNEAVNFVLTEDHARRFGEAMRLRTRHRWRRRRVQIPSETPDISMELNEIMVNSGNGNSLQPLQAGEGSITAEERNDEAGKTCEINNEDLEDDKEENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSNSRVMDEDATLKIPLRPHARKVESLRQTIQRTALPFPVEEMMRRLGNRFDFNRELDQPPEPDGSHEIIGRSPYLLNRILTSRGIRREQIPLPPHDEVGDFAQTDISGIEVGETRFQSLPVLRSLLHRTRVSSITSAFNSAERLPDGFLYNDPLITRNQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDALQVSDVDSGNSRAPRRRRLA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7851893 7853164 - evm.model.ptg000018l.60 HCH11g0555 554022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0555 423 SUPERFAMILY RING/U-box 136 193 - -
HCH11g0555 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 200 IPR013083 -
HCH11g0555 423 FunFam Zinc finger family protein 121 194 - -
HCH11g0555 423 MobiDBLite consensus disorder prediction 392 412 - -
HCH11g0555 423 ProSitePatterns Zinc finger RING-type signature. 155 164 IPR017907 -
HCH11g0555 423 Pfam Zinc finger, C3HC4 type (RING finger) 140 180 IPR018957 GO:0046872(InterPro)
HCH11g0555 423 CDD RING-HC_AtRMA-like 138 181 - -
HCH11g0555 423 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
HCH11g0555 423 MobiDBLite consensus disorder prediction 98 132 - -
HCH11g0555 423 MobiDBLite consensus disorder prediction 1 24 - -
HCH11g0555 423 MobiDBLite consensus disorder prediction 392 423 - -
HCH11g0555 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 106 357 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
HCH11g0555 423 SMART ring_2 140 180 IPR001841 -
HCH11g0555 423 MobiDBLite consensus disorder prediction 98 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0555 HCH-Chr11:7851893 HCH6g0325 HCH-Chr6:5038868 4.30E-35 dispersed
HCH11g0555 HCH-Chr11:7851893 HCH4g0696 HCH-Chr4:4518971 2.40E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0555 K10666 - csv:101220497 680.633