Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0562 ATGTTTTCGTGGATGGCAAGGATGGCATCAGCTTGTTGGAAACCAGTGAGACAGTATGCACGTATGAGCAAGGATGATAGCAATAATAATAATAATAGCAGTAATAATAACAACAACAGTAACAACAATGAAGATTCTTCTTTGGAAGATTCTCTTTTATGGAGTAGAGAGCTTGAAAAACACTCTTATGGTGAATTCTCTTTTGCTGTTGTTCAAGCTAATGAGATAATTGAGGATCATAGTCAGGTTGAGACTGGCCCTGATGCCACTTTTGTGGGCGTTTATGATGGCCACGGTGGCCCTGATGCTTCTCGCTTTATCTGCGATCATATTTTCCGGAATCTAATCAGGATTGCTCAAGAAAATGGAACTATAACTGAAGATATCCTTCGAAGTGCATTTTCTGCAACTGAGGAGGGGTTTCTTACTCTTGTTCGGAGGTCATGCGGAATAAAACCAGTAATTGCAGCAATGGGATCTTGTTGCCTGGTTGGAGTTATCTGGAGAGGAACATTATATATTGGCAATCTTGGTGATTCCCGCGCTGTGATTGGTTCTTTAGGTAAATCTAATAAGATAGGTGCAGAACAATTGACTAGAGATCACAATGCAAGTATCGAGGAGGTTAGGCAAGAACTCCGGTCCTTACATCCTGATGACTCACATATCGTAGTCATGAAGCATGGAGTGTGGCGTATTAAAGGCATAATTCAGGTATCTAGATCGATAGGTGATGCGTATTTGAAAAGGCCAGAGTTCTCTCTTGATCCTTCATTTCCGCGATTCCACCTTGCAGAGACTCTTCGACGGCCTGTTCTTACTGCTGAACCATCAATAATTACAAGAGTTTTACAACCCAATGACAAATTTCTTATATTTGCATCTGATGGCCTTTGGGAGCATATGTCAAATCAGCAAGCTGTTGAGATTGTGTATAATAACCCACGAGCGGGAATTGCAAAAAGACTTATCAAAACTGCTTTAAGTGAGGCTGCGAGGAAGCGGGAGTTGAGATACGATGATCTTAAGAAACTTGAGAAAGGTATTAGACGGTTCTTTCATGATGATATCACAGTTGTTGTCATCTTTTGGGACCACGAGTTACTGGGAAAGAAGGCACATATACCTGAATTATCTGTACGTGGGTTTGCTGATACCGTTGGACCATCGAAGTTTAACATTCTTCGAGGGAATGATGGGAATGGAAGGTCTGCTATCTAA 1221 41.28 MFSWMARMASACWKPVRQYARMSKDDSNNNNNSSNNNNNSNNNEDSSLEDSLLWSRELEKHSYGEFSFAVVQANEIIEDHSQVETGPDATFVGVYDGHGGPDASRFICDHIFRNLIRIAQENGTITEDILRSAFSATEEGFLTLVRRSCGIKPVIAAMGSCCLVGVIWRGTLYIGNLGDSRAVIGSLGKSNKIGAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLAETLRRPVLTAEPSIITRVLQPNDKFLIFASDGLWEHMSNQQAVEIVYNNPRAGIAKRLIKTALSEAARKRELRYDDLKKLEKGIRRFFHDDITVVVIFWDHELLGKKAHIPELSVRGFADTVGPSKFNILRGNDGNGRSAI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8501636 8505396 - evm.model.ptg000018l.53 HCH11g0562 554029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0562 406 ProSiteProfiles PPM-type phosphatase domain profile. 65 364 IPR001932 -
HCH11g0562 406 Pfam Protein phosphatase 2C 86 333 IPR001932 -
HCH11g0562 406 SUPERFAMILY PP2C-like 68 365 IPR036457 -
HCH11g0562 406 SMART PP2C_4 59 362 IPR001932 -
HCH11g0562 406 CDD PP2Cc 63 363 IPR001932 -
HCH11g0562 406 FunFam Probable protein phosphatase 2C 42 56 372 - -
HCH11g0562 406 MobiDBLite consensus disorder prediction 22 48 - -
HCH11g0562 406 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
HCH11g0562 406 Gene3D - 23 374 IPR036457 -
HCH11g0562 406 PANTHER PROTEIN PHOSPHATASE 56 363 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0562 HCH-Chr11:8501636 HCH7g0720 HCH-Chr7:8945553 5.80E-114 dispersed
HCH11g0562 HCH-Chr11:8501636 HCH2g0571 HCH-Chr2:49532998 3.80E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0562 K01102 - csv:101222146 698.353