Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0564 ATGGAAATAGTCTCAGAGAAGAATCTTCAGCGCAAGCAGTGTTCCTATAAATCACTGGACGAGGAATACGAGATTCAGAAGGAGACTTACAAGGGACAGCAATACAGCCAAATTTACTTTGCTAGACTCCATTTGATGAGAACGATTCTATATTCCCTTGTCTCTAAGTGGAAACCTCATTTACCAGTTTGCACTGTATTGGGATTGGAAGAAGGCAAGGAATGCATAATTGTTGGAACCCTGTATAAGCACATGAAACTGAAACCTACCATTTTGGATGAGTATTCGAAGGAGAGATCTGCCACCCCACTTGTTAAGCCTCATAACTTTGTGCACCCAGATGATCACCTGGTTTTGGAAGATGAAAGTGGGAGAGTCAAGCTTTCTGGGTCTACGCTTTTACCTTCTGTTTATGTAACAGGAAATGTTGTTGCATTGCATGGGAAGGAAACTAGTGTTGGTGACTTCTTGGTTTTGGACGTCCTAGAAGCTGGCCTGCCACCCCAGACAGAGCTCCCACCTATATCAATGCATGCAGGAGAAGATAAGTATGTAGTTTTTACGTCAGGCCTAAGTATTGGGAGCAGCATTTCTAATCCCCTTCAGTTTCAGCTTCTTGTTGATCATATAACGGGACATTTAGGGGATGAAAAGGAACGAGGTATTGCAGCTCAAATAGTTCATGTTGTTATTTGTGGGAATTCTGTTGAAATTCCTCGTGCATTTTTAAATGGGCAGAATTTAGCTGCGAAGGATCAATCAATGCTGACAGAGCCTCTAACAGAGCTAGATATCATGTTGAATCAGCTTGCTGCAGGTTTACCTGTAGACATCATGCCCGGTTCCAGTGATCCAGCCAACTTTTCCTTACCACAGCAGCCTTTGCACAGATGCCTTTTCCCTGGATCATCAACTTATAACACTTTTAGATCTTGCACTAACCCTCATTGCTTTGAGCTTGATAATGTCAGATTCCTTGGAACGTCAGGTCAGAATGTAGATGATCTTGAGAAGTACTCAGAGGGTAAGGATAAGCTCGACTTTGTGGAGAGGATATTGAGATGGAGGCATCTGGCACCGACTGCTCCCAATACTCTTGGTTGTTATCCTTTCACTGATAGGGATCCTTTCCTGATAGAGAATTGTCCTCATGTTTATTTTGTTGGTAATCAGGACAAGTTTGATACTCGCTCAATAAAGGGACCTGAAGGGCAGGTGGTAAGACTCATTTCCATTCCAAGATTTTGCGAGAAGGGAGTTGCTGTAATGCTTAACTTGAGAAATCTTGAATGCCACACTCTCAGTTTTGGAACGGAATTCAGCTGA 1326 42.76 MEIVSEKNLQRKQCSYKSLDEEYEIQKETYKGQQYSQIYFARLHLMRTILYSLVSKWKPHLPVCTVLGLEEGKECIIVGTLYKHMKLKPTILDEYSKERSATPLVKPHNFVHPDDHLVLEDESGRVKLSGSTLLPSVYVTGNVVALHGKETSVGDFLVLDVLEAGLPPQTELPPISMHAGEDKYVVFTSGLSIGSSISNPLQFQLLVDHITGHLGDEKERGIAAQIVHVVICGNSVEIPRAFLNGQNLAAKDQSMLTEPLTELDIMLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGSSTYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSEGKDKLDFVERILRWRHLAPTAPNTLGCYPFTDRDPFLIENCPHVYFVGNQDKFDTRSIKGPEGQVVRLISIPRFCEKGVAVMLNLRNLECHTLSFGTEFS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8567314 8586202 - evm.model.ptg000018l.51 HCH11g0564 554031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0564 441 Gene3D - 175 440 - -
HCH11g0564 441 Pfam DNA polymerase alpha/epsilon subunit B 185 396 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
HCH11g0564 441 Gene3D - 40 164 - -
HCH11g0564 441 FunFam DNA polymerase delta small subunit 168 441 - -
HCH11g0564 441 FunFam DNA polymerase delta subunit 2 40 164 - -
HCH11g0564 441 CDD MPP_PolD2_C 199 436 IPR041863 -
HCH11g0564 441 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 6 434 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
HCH11g0564 441 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0564 K02328 - csv:101221438 784.637