Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0581 ATGGTCCATCATCAACGGTTTACGTATTTTTATGTCATTGTCTACTCGACAATTCTGATTTCGTTGGCTTCGGCGTTCACTGATCCACTTGATGTTATAGCTCTGGAAGATCTGTACAGTGCTTTGAATTACCCACTAGAGCTTACGGGATGGAGAAATGAAGGTGGAGATCCTTGCGGGGAATCGTGGAGGGGAGTATCTTGTTTCGGGTCATCAGTAATATACCTTAATCTTCAAGGACTGAACCTCATTGGGAATCTTGGAGGGCAGCTCAATTATCTCCAGAATTTGAAGCAAATGGATGTTAGTTCCAATAGACTTGTGGGTGAAATTCCACAAAACTTACCCCCTAATGCCACTCATATAAATATGGCTTCTAACTATTTGAGCCAAAATATTCCACAAACTTTATCCTACTTGAAAAGTCTCCGACATCTGAATCTGAGCCATAATACTCTATCAGGTCCTATTGGAAATGTGTTTACTGGCCTACAAAATCTGAGAGAGATGGATTTATCATATAATGACTTTACTGGTGATTTACCCAGTTCATTCGGCTCCTTGATAAACATCACTAGACTATTCTTGCAGAACAACAGATTCACTGGATCAGTTGCCTACTTGTCTGACCTTCCATTAATTGACTTGAACATCCAAGACAATCTTTTTAGTGGTATAATTCCAGAGAAGTTTAAATATATTCCAAATTTGTGGATTGGGGGAAATAGGATCCATGTAGAAATTAATTCTCCACCATGGGATTTCCCCTCGGAAAAAGCACCTATGGAGCAAAACATTAGTGGTCCTCCAACAACCGAGTCAAACGCCATCGAGAATTCTCCCTCTCGTAATATAGTCAGGCATGGGAAGAAAAGGCTTGGTCCTGGAGGAGTAATTCTCCTGGTTGGTGGGGTAGCTCTAGTAGCAACCTTTGCGGCTTTATTTTTCACAATTGGGATGGAAAAAATCCATGAAAATATACGAAAGCTGATGATCAGCAACATATTACCCCGTTCTATTCCTCTTAGCAAAGCTGAAGTTGGCTCGTCCACTGCACCCGAAGAAAGCTTGCAGATCTTGCCCATTAATTCTTCATTAACAGGTGGTCCAAGGACTACAACTCTAATAAACCACACCAGAATTGAGAAAGTTTCTGGAAATGAAAGTTTCTCAAAAAGATGCAGGCTTCCAGTGAGAACAAAAATTTACACTGTAGCAGAGCTTCAATCTGCTACAGACAACTTTAGTAAAAAGAACTTTCTTGGAGAGGGATCCCTTGGTTCTGTTTATAGAGCTAAATTTCCTGATGGCCAAGTTTTGGCTGTGAAGAATATTGATATGGCAGCACTGTCTTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCTTCCCGCTTGAGGCACCCAAACATTGTTACGCTACTTGGATATTGCGTAGAGAATGGGCAGCATTTACTTGGATATGAATATGTTCGAAACCTGTCCCTTGATGATGCTTTACATTGTGAAGCATACGTACCTCTGTCATGGACTGTCCGTTTACACATTGCTCTCGGGGTTGCTAGGGCTTTAGATTATTTGCATACAAATTTTTTCCCACCATTTGCTCACTGCAATCTGAAGGCTGGCAATATCTTACTTGATGAAGAATTGACGCCTCGCATTTGTGATTGTGGGTTGTCTGTTTTGAGGCCACTTGCGAGCAATAGAATTAAAATAAAGGCTTCTGAGATGTTCATTGGTGATCGTGGCTACCTTGCACCTGAACATGGCCATCCAGGAATTGATCATACCAAAAGTGATGTGTATTCTTTTGGCGTGTTGCTTTTGGAGCTTATCACAGGGAGGAAACCATTTGACAATTCAAAACCCAGGAGAGAGCAATCTCTTGTTAAATGGGCTTCGTTCCGGCTTCATGACCGTGAAAATTTAGAACAGATGGTTGATCCAGGCATTAAAAGAACATTTTCCTCCCAGGCGCTCTCTCGCTTTGTTGATACTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCAGACCACCAATGTCTGAAATTGTGGAATCCCTTACAATTCTTCAAAAAAAGATGGAGATGGTGAAACGTGTCACGGCAGAAGGTATCGAAGTTGATCCTTTCGATAAATCTTTTCGTTCAACCAACACTCGCTTCCCAAGTTCGCCAACATACAGCTATTCATCCACCTCATTTTAG 2217 41.41 MVHHQRFTYFYVIVYSTILISLASAFTDPLDVIALEDLYSALNYPLELTGWRNEGGDPCGESWRGVSCFGSSVIYLNLQGLNLIGNLGGQLNYLQNLKQMDVSSNRLVGEIPQNLPPNATHINMASNYLSQNIPQTLSYLKSLRHLNLSHNTLSGPIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLINITRLFLQNNRFTGSVAYLSDLPLIDLNIQDNLFSGIIPEKFKYIPNLWIGGNRIHVEINSPPWDFPSEKAPMEQNISGPPTTESNAIENSPSRNIVRHGKKRLGPGGVILLVGGVALVATFAALFFTIGMEKIHENIRKLMISNILPRSIPLSKAEVGSSTAPEESLQILPINSSLTGGPRTTTLINHTRIEKVSGNESFSKRCRLPVRTKIYTVAELQSATDNFSKKNFLGEGSLGSVYRAKFPDGQVLAVKNIDMAALSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVENGQHLLGYEYVRNLSLDDALHCEAYVPLSWTVRLHIALGVARALDYLHTNFFPPFAHCNLKAGNILLDEELTPRICDCGLSVLRPLASNRIKIKASEMFIGDRGYLAPEHGHPGIDHTKSDVYSFGVLLLELITGRKPFDNSKPRREQSLVKWASFRLHDRENLEQMVDPGIKRTFSSQALSRFVDTISLCIQPVKEFRPPMSEIVESLTILQKKMEMVKRVTAEGIEVDPFDKSFRSTNTRFPSSPTYSYSSTSF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10287813 10293112 + evm.model.ptg000018l.34 HCH11g0581 554048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0581 738 Gene3D Transferase(Phosphotransferase) domain 1 493 712 - -
HCH11g0581 738 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
HCH11g0581 738 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515(InterPro)
HCH11g0581 738 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
HCH11g0581 738 Pfam Protein kinase domain 416 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0581 738 FunFam Leucine-rich repeat receptor-like protein kinase 493 702 - -
HCH11g0581 738 SUPERFAMILY Protein kinase-like (PK-like) 393 693 IPR011009 -
HCH11g0581 738 Gene3D Ribonuclease Inhibitor 29 260 IPR032675 -
HCH11g0581 738 Gene3D Phosphorylase Kinase; domain 1 375 492 - -
HCH11g0581 738 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 492 - -
HCH11g0581 738 ProSiteProfiles Protein kinase domain profile. 415 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0581 738 SUPERFAMILY L domain-like 29 239 - -
HCH11g0581 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 692 IPR046959 -
HCH11g0581 738 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0581 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0581 HCH-Chr11:10287813 HCH13g1042 HCH-Chr13:31155369 9.80E-237 dispersed
HCH11g0581 HCH-Chr11:10287813 HCH6g0029 HCH-Chr6:457729 7.10E-110 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH4g1561 . 386 688 Strubbelig Receptor Gene Family AT1G11130 51.8 9.6e-85 311.6
HCH3g0962 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 3.7e-84 309.7
HCH6g0029 . 409 697 Strubbelig Receptor Gene Family AT1G11130 51.9 6.9e-83 305.4
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH6g0029 . 1 726 Strubbelig Receptor Gene Family AT1G53730 60.2 2.0e-210 729.2
HCH4g1561 . 1 701 Strubbelig Receptor Gene Family AT1G53730 63.4 8.2e-196 680.6
HCH3g0962 . 24 701 Strubbelig Receptor Gene Family AT1G53730 53.5 8.9e-150 527.7
HCH6g0029 . 11 720 Strubbelig Receptor Gene Family AT3G14350 53.4 1.0e-190 663.7
HCH4g1561 . 6 699 Strubbelig Receptor Gene Family AT3G14350 57.0 3.6e-172 602.1
HCH3g0962 . 234 708 Strubbelig Receptor Gene Family AT4G22130 69.4 5.7e-176 614.4
HCH4g1561 . 394 707 Strubbelig Receptor Gene Family AT4G22130 66.8 5.4e-118 421.8
HCH6g0029 . 388 716 Strubbelig Receptor Gene Family AT4G22130 62.5 1.3e-116 417.2
HCH7g0172 . 480 788 Strubbelig Receptor Gene Family AT4G22130 60.8 8.6e-108 387.9
HCH14g0886 . 415 739 Strubbelig Receptor Gene Family AT4G22130 53.9 3.0e-100 362.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81057 PF00069 Pkinase 2.80E-35 CL0016 HCH PK