Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0581 ATGGTCCATCATCAACGGTTTACGTATTTTTATGTCATTGTCTACTCGACAATTCTGATTTCGTTGGCTTCGGCGTTCACTGATCCACTTGATGTTATAGCTCTGGAAGATCTGTACAGTGCTTTGAATTACCCACTAGAGCTTACGGGATGGAGAAATGAAGGTGGAGATCCTTGCGGGGAATCGTGGAGGGGAGTATCTTGTTTCGGGTCATCAGTAATATACCTTAATCTTCAAGGACTGAACCTCATTGGGAATCTTGGAGGGCAGCTCAATTATCTCCAGAATTTGAAGCAAATGGATGTTAGTTCCAATAGACTTGTGGGTGAAATTCCACAAAACTTACCCCCTAATGCCACTCATATAAATATGGCTTCTAACTATTTGAGCCAAAATATTCCACAAACTTTATCCTACTTGAAAAGTCTCCGACATCTGAATCTGAGCCATAATACTCTATCAGGTCCTATTGGAAATGTGTTTACTGGCCTACAAAATCTGAGAGAGATGGATTTATCATATAATGACTTTACTGGTGATTTACCCAGTTCATTCGGCTCCTTGATAAACATCACTAGACTATTCTTGCAGAACAACAGATTCACTGGATCAGTTGCCTACTTGTCTGACCTTCCATTAATTGACTTGAACATCCAAGACAATCTTTTTAGTGGTATAATTCCAGAGAAGTTTAAATATATTCCAAATTTGTGGATTGGGGGAAATAGGATCCATGTAGAAATTAATTCTCCACCATGGGATTTCCCCTCGGAAAAAGCACCTATGGAGCAAAACATTAGTGGTCCTCCAACAACCGAGTCAAACGCCATCGAGAATTCTCCCTCTCGTAATATAGTCAGGCATGGGAAGAAAAGGCTTGGTCCTGGAGGAGTAATTCTCCTGGTTGGTGGGGTAGCTCTAGTAGCAACCTTTGCGGCTTTATTTTTCACAATTGGGATGGAAAAAATCCATGAAAATATACGAAAGCTGATGATCAGCAACATATTACCCCGTTCTATTCCTCTTAGCAAAGCTGAAGTTGGCTCGTCCACTGCACCCGAAGAAAGCTTGCAGATCTTGCCCATTAATTCTTCATTAACAGGTGGTCCAAGGACTACAACTCTAATAAACCACACCAGAATTGAGAAAGTTTCTGGAAATGAAAGTTTCTCAAAAAGATGCAGGCTTCCAGTGAGAACAAAAATTTACACTGTAGCAGAGCTTCAATCTGCTACAGACAACTTTAGTAAAAAGAACTTTCTTGGAGAGGGATCCCTTGGTTCTGTTTATAGAGCTAAATTTCCTGATGGCCAAGTTTTGGCTGTGAAGAATATTGATATGGCAGCACTGTCTTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCTTCCCGCTTGAGGCACCCAAACATTGTTACGCTACTTGGATATTGCGTAGAGAATGGGCAGCATTTACTTGGATATGAATATGTTCGAAACCTGTCCCTTGATGATGCTTTACATTGTGAAGCATACGTACCTCTGTCATGGACTGTCCGTTTACACATTGCTCTCGGGGTTGCTAGGGCTTTAGATTATTTGCATACAAATTTTTTCCCACCATTTGCTCACTGCAATCTGAAGGCTGGCAATATCTTACTTGATGAAGAATTGACGCCTCGCATTTGTGATTGTGGGTTGTCTGTTTTGAGGCCACTTGCGAGCAATAGAATTAAAATAAAGGCTTCTGAGATGTTCATTGGTGATCGTGGCTACCTTGCACCTGAACATGGCCATCCAGGAATTGATCATACCAAAAGTGATGTGTATTCTTTTGGCGTGTTGCTTTTGGAGCTTATCACAGGGAGGAAACCATTTGACAATTCAAAACCCAGGAGAGAGCAATCTCTTGTTAAATGGGCTTCGTTCCGGCTTCATGACCGTGAAAATTTAGAACAGATGGTTGATCCAGGCATTAAAAGAACATTTTCCTCCCAGGCGCTCTCTCGCTTTGTTGATACTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCAGACCACCAATGTCTGAAATTGTGGAATCCCTTACAATTCTTCAAAAAAAGATGGAGATGGTGAAACGTGTCACGGCAGAAGGTATCGAAGTTGATCCTTTCGATAAATCTTTTCGTTCAACCAACACTCGCTTCCCAAGTTCGCCAACATACAGCTATTCATCCACCTCATTTTAG 2217 41.41 MVHHQRFTYFYVIVYSTILISLASAFTDPLDVIALEDLYSALNYPLELTGWRNEGGDPCGESWRGVSCFGSSVIYLNLQGLNLIGNLGGQLNYLQNLKQMDVSSNRLVGEIPQNLPPNATHINMASNYLSQNIPQTLSYLKSLRHLNLSHNTLSGPIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLINITRLFLQNNRFTGSVAYLSDLPLIDLNIQDNLFSGIIPEKFKYIPNLWIGGNRIHVEINSPPWDFPSEKAPMEQNISGPPTTESNAIENSPSRNIVRHGKKRLGPGGVILLVGGVALVATFAALFFTIGMEKIHENIRKLMISNILPRSIPLSKAEVGSSTAPEESLQILPINSSLTGGPRTTTLINHTRIEKVSGNESFSKRCRLPVRTKIYTVAELQSATDNFSKKNFLGEGSLGSVYRAKFPDGQVLAVKNIDMAALSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVENGQHLLGYEYVRNLSLDDALHCEAYVPLSWTVRLHIALGVARALDYLHTNFFPPFAHCNLKAGNILLDEELTPRICDCGLSVLRPLASNRIKIKASEMFIGDRGYLAPEHGHPGIDHTKSDVYSFGVLLLELITGRKPFDNSKPRREQSLVKWASFRLHDRENLEQMVDPGIKRTFSSQALSRFVDTISLCIQPVKEFRPPMSEIVESLTILQKKMEMVKRVTAEGIEVDPFDKSFRSTNTRFPSSPTYSYSSTSF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10287813 10293112 + evm.model.ptg000018l.34 HCH11g0581 554048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0581 738 Gene3D Transferase(Phosphotransferase) domain 1 493 712 - -
HCH11g0581 738 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
HCH11g0581 738 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515(InterPro)
HCH11g0581 738 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
HCH11g0581 738 Pfam Protein kinase domain 416 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0581 738 FunFam Leucine-rich repeat receptor-like protein kinase 493 702 - -
HCH11g0581 738 SUPERFAMILY Protein kinase-like (PK-like) 393 693 IPR011009 -
HCH11g0581 738 Gene3D Ribonuclease Inhibitor 29 260 IPR032675 -
HCH11g0581 738 Gene3D Phosphorylase Kinase; domain 1 375 492 - -
HCH11g0581 738 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 492 - -
HCH11g0581 738 ProSiteProfiles Protein kinase domain profile. 415 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0581 738 SUPERFAMILY L domain-like 29 239 - -
HCH11g0581 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 692 IPR046959 -
HCH11g0581 738 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0581 HCH-Chr11:10287813 HCH13g1042 HCH-Chr13:31155369 9.80E-237 dispersed
HCH11g0581 HCH-Chr11:10287813 HCH6g0029 HCH-Chr6:457729 7.10E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81057 PF00069 Pkinase 2.80E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0581 - - - 0.0