Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0584 | ATGGCTTCCAATAATATAAATAAAGGGAGCAGCCACCAAAACCAAAACCAAAACCAGCAAGAGAAACAACATCACCACCATCAACAACAGATTTTACCGAATCCCAACAGCTTCACAACTCAACTTGAACAACAACAACAACAACAACAGAATCAACACCTTCACTTTCATCATCATCAACATGAACATCATCACCAATTACCTTTTGGACTGATTCAGTCTGTTTCATCAAATTTCATTAAGGATGGGGGAGCTGATGATCTGGGTGAACTTGATCAAGCTCTCTTTCTTTATCTTGATGGACAAGATCAACCCTCTACTACAACTTCTCAAGATCACCAAAAACAGAACTCAGGGATGAGACCTCCAACTTTGAATATTTTCCCCTCACAGCCTATGCACGTAGACGACCCATCTTTAGCCAAAGCTAATACTGCATTGATTATCCATGGAAATTCAAAGATTATCAAACCATCCGAGTCGTCAAAGGAGTTGATAGCCAATCAACGGGGTGGCGCCGCCGCATCTGGACGGCCTCCGGCAACCGAACCTCCCAAACCTCCAAAGCGTGAGTCTATCAGGAAAGGGCTGACATCGAGTTCAGACCAAGAAGGACCCAAGACGCCGGACCCCAAGACACTAAGAAGGCTTGCGCAGAATCGAGAGGCAGCTAGAAAAAGCAGACTCAGAAAAAAGGCATATGTCCAGCAGTTAGAGTTAAGTAGGATTAAGCTTACTCAATTGGAACAAGATCTACAAAGAGCTAGATCTCAGGGCATGTTTTTGGGTGGAGGAGCTCTTTTAGGAGGAGATCAAGGACTTCCTTGTGGCCTCCACAATATCACCTCTGATGCAGCAGTGTTCGATATAGAGTACGGAAGGTGGCAAGAGGAACACCACCGCCTAATGTGCGAGCTGCGGGCGGCGGTGCAGGAGCATCTACCGGAGAACGAGCTCCGGCTGTTCGTCGATAACTGTCTTGCTCACTACGACGAGGTTCTGAATTTGAAATCCATGGTGGCTAAATCCGACGTTTTCCACCTGGTTTCCGGGACGTGGAAGACTCCGGCCGAGCGTTGCTTCTTGTGGATGGGTGATTTTAGGCCATCTGAGCTCATCAAGATCATAATGGGTCAAGTAGAGCCATTAACGGAGCATCAAATACTAAGCATTTGTGGTTTGCAACAATCCACAAGAGAGACTGAGGAGGCTCTGTCGCAAGGCCTTGAAGCCCTAAACCAGTCTTTGTCAGACACCATTACTTCTGATTCATTGAGTAGCCCTCCTAATATGGCTAATTATATGGGGCAGATGACTCATGCCATCAACAAGCTCTCTACCCTTGAAGGCTTTTTTAGACAGGCAGATAATTTGAGGCATCAGACGTTGCATAGGCTACACCAAATGTTAACAACTCGGCAAGCGGCGAGGTGCTTGTTAGGGATTGCTGAGTATTTCCATCGTCTTCGAGCTCTCAGCTCTTTGTGGTTGGCTCGACCCCCAAGGCAGGATTAA | 1515 | 46.6 | MASNNINKGSSHQNQNQNQQEKQHHHHQQQILPNPNSFTTQLEQQQQQQQNQHLHFHHHQHEHHHQLPFGLIQSVSSNFIKDGGADDLGELDQALFLYLDGQDQPSTTTSQDHQKQNSGMRPPTLNIFPSQPMHVDDPSLAKANTALIIHGNSKIIKPSESSKELIANQRGGAAASGRPPATEPPKPPKRESIRKGLTSSSDQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQDLQRARSQGMFLGGGALLGGDQGLPCGLHNITSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEVLNLKSMVAKSDVFHLVSGTWKTPAERCFLWMGDFRPSELIKIIMGQVEPLTEHQILSICGLQQSTRETEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTHAINKLSTLEGFFRQADNLRHQTLHRLHQMLTTRQAARCLLGIAEYFHRLRALSSLWLARPPRQD | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10875704 | 10885808 | + | evm.model.ptg000018l.31 | HCH11g0584 | 554051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0584 | 504 | MobiDBLite | consensus disorder prediction | 102 | 137 | - | - | |
HCH11g0584 | 504 | MobiDBLite | consensus disorder prediction | 102 | 125 | - | - | |
HCH11g0584 | 504 | FunFam | BZIP family transcription factor | 211 | 260 | - | - | |
HCH11g0584 | 504 | Coils | Coil | 231 | 258 | - | - | |
HCH11g0584 | 504 | SMART | brlzneu | 208 | 287 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0584 | 504 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
HCH11g0584 | 504 | MobiDBLite | consensus disorder prediction | 29 | 53 | - | - | |
HCH11g0584 | 504 | ProSiteProfiles | DOG1 domain profile. | 285 | 499 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH11g0584 | 504 | MobiDBLite | consensus disorder prediction | 159 | 215 | - | - | |
HCH11g0584 | 504 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 210 | 254 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0584 | 504 | Gene3D | - | 211 | 261 | - | - | |
HCH11g0584 | 504 | Pfam | Seed dormancy control | 303 | 377 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH11g0584 | 504 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
HCH11g0584 | 504 | Pfam | bZIP transcription factor | 212 | 252 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0584 | 504 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 215 | 230 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH11g0584 | 504 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 123 | 501 | - | - | |
HCH11g0584 | 504 | SUPERFAMILY | Leucine zipper domain | 212 | 254 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0584 | HCH-Chr11:10875704 | HCH4g0180 | HCH-Chr4:1035219 | 1.10E-90 | dispersed | |
HCH3g1129 | HCH-Chr3:34951690 | HCH11g0584 | HCH-Chr11:10875704 | 1.20E-92 | transposed | |
HCH11g0584 | HCH-Chr11:10875704 | HCH9g1135 | HCH-Chr9:14851883 | 1.00E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32567 | PF14144 | DOG1 | 1.00E-31 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0584 | K14431 | - | csv:101204923 | 699.123 |