Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0584 ATGGCTTCCAATAATATAAATAAAGGGAGCAGCCACCAAAACCAAAACCAAAACCAGCAAGAGAAACAACATCACCACCATCAACAACAGATTTTACCGAATCCCAACAGCTTCACAACTCAACTTGAACAACAACAACAACAACAACAGAATCAACACCTTCACTTTCATCATCATCAACATGAACATCATCACCAATTACCTTTTGGACTGATTCAGTCTGTTTCATCAAATTTCATTAAGGATGGGGGAGCTGATGATCTGGGTGAACTTGATCAAGCTCTCTTTCTTTATCTTGATGGACAAGATCAACCCTCTACTACAACTTCTCAAGATCACCAAAAACAGAACTCAGGGATGAGACCTCCAACTTTGAATATTTTCCCCTCACAGCCTATGCACGTAGACGACCCATCTTTAGCCAAAGCTAATACTGCATTGATTATCCATGGAAATTCAAAGATTATCAAACCATCCGAGTCGTCAAAGGAGTTGATAGCCAATCAACGGGGTGGCGCCGCCGCATCTGGACGGCCTCCGGCAACCGAACCTCCCAAACCTCCAAAGCGTGAGTCTATCAGGAAAGGGCTGACATCGAGTTCAGACCAAGAAGGACCCAAGACGCCGGACCCCAAGACACTAAGAAGGCTTGCGCAGAATCGAGAGGCAGCTAGAAAAAGCAGACTCAGAAAAAAGGCATATGTCCAGCAGTTAGAGTTAAGTAGGATTAAGCTTACTCAATTGGAACAAGATCTACAAAGAGCTAGATCTCAGGGCATGTTTTTGGGTGGAGGAGCTCTTTTAGGAGGAGATCAAGGACTTCCTTGTGGCCTCCACAATATCACCTCTGATGCAGCAGTGTTCGATATAGAGTACGGAAGGTGGCAAGAGGAACACCACCGCCTAATGTGCGAGCTGCGGGCGGCGGTGCAGGAGCATCTACCGGAGAACGAGCTCCGGCTGTTCGTCGATAACTGTCTTGCTCACTACGACGAGGTTCTGAATTTGAAATCCATGGTGGCTAAATCCGACGTTTTCCACCTGGTTTCCGGGACGTGGAAGACTCCGGCCGAGCGTTGCTTCTTGTGGATGGGTGATTTTAGGCCATCTGAGCTCATCAAGATCATAATGGGTCAAGTAGAGCCATTAACGGAGCATCAAATACTAAGCATTTGTGGTTTGCAACAATCCACAAGAGAGACTGAGGAGGCTCTGTCGCAAGGCCTTGAAGCCCTAAACCAGTCTTTGTCAGACACCATTACTTCTGATTCATTGAGTAGCCCTCCTAATATGGCTAATTATATGGGGCAGATGACTCATGCCATCAACAAGCTCTCTACCCTTGAAGGCTTTTTTAGACAGGCAGATAATTTGAGGCATCAGACGTTGCATAGGCTACACCAAATGTTAACAACTCGGCAAGCGGCGAGGTGCTTGTTAGGGATTGCTGAGTATTTCCATCGTCTTCGAGCTCTCAGCTCTTTGTGGTTGGCTCGACCCCCAAGGCAGGATTAA 1515 46.6 MASNNINKGSSHQNQNQNQQEKQHHHHQQQILPNPNSFTTQLEQQQQQQQNQHLHFHHHQHEHHHQLPFGLIQSVSSNFIKDGGADDLGELDQALFLYLDGQDQPSTTTSQDHQKQNSGMRPPTLNIFPSQPMHVDDPSLAKANTALIIHGNSKIIKPSESSKELIANQRGGAAASGRPPATEPPKPPKRESIRKGLTSSSDQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQDLQRARSQGMFLGGGALLGGDQGLPCGLHNITSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEVLNLKSMVAKSDVFHLVSGTWKTPAERCFLWMGDFRPSELIKIIMGQVEPLTEHQILSICGLQQSTRETEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTHAINKLSTLEGFFRQADNLRHQTLHRLHQMLTTRQAARCLLGIAEYFHRLRALSSLWLARPPRQD 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10875704 10885808 + evm.model.ptg000018l.31 HCH11g0584 554051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0584 504 MobiDBLite consensus disorder prediction 102 137 - -
HCH11g0584 504 MobiDBLite consensus disorder prediction 102 125 - -
HCH11g0584 504 FunFam BZIP family transcription factor 211 260 - -
HCH11g0584 504 Coils Coil 231 258 - -
HCH11g0584 504 SMART brlzneu 208 287 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0584 504 MobiDBLite consensus disorder prediction 1 18 - -
HCH11g0584 504 MobiDBLite consensus disorder prediction 29 53 - -
HCH11g0584 504 ProSiteProfiles DOG1 domain profile. 285 499 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH11g0584 504 MobiDBLite consensus disorder prediction 159 215 - -
HCH11g0584 504 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0584 504 Gene3D - 211 261 - -
HCH11g0584 504 Pfam Seed dormancy control 303 377 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH11g0584 504 MobiDBLite consensus disorder prediction 1 66 - -
HCH11g0584 504 Pfam bZIP transcription factor 212 252 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0584 504 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 215 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH11g0584 504 PANTHER TRANSCRIPTION FACTOR TGA9 123 501 - -
HCH11g0584 504 SUPERFAMILY Leucine zipper domain 212 254 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0584 HCH-Chr11:10875704 HCH4g0180 HCH-Chr4:1035219 1.10E-90 dispersed
HCH3g1129 HCH-Chr3:34951690 HCH11g0584 HCH-Chr11:10875704 1.20E-92 transposed
HCH11g0584 HCH-Chr11:10875704 HCH9g1135 HCH-Chr9:14851883 1.00E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32567 PF14144 DOG1 1.00E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0584 K14431 - csv:101204923 699.123