Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0591 | ATGGAGCTTAAAGTAGGGACTGGGCTTGAATCTCTTCAATTCTGTGAAGAGATTCAAGGATTGATGACAATTCCACCGGAAAATGCTAGCTCTTTTACTGCACTTTTGGAACTTCCGGCAACTCAAGCTATAGAGCTCCTCCACTCGCCAGAATCTGAAGAAGCTGCGACGGCGCCGGAGACGGATTTGACCGGCGATACCCTTTCGAAACCCTACTTCAACGGCTTCGATTGCAATTTAACATTCCCAATAAACACATCCTTAATTGAACAACGCGCCACCAAATTCTTAGATCATTTGCCGGAAATTACAACATCATTGCCGTTAAATTCGTGTGTTAAGAACGAGCCCGGGCCGGAAACCGATTCGAATCCGAGTTTATTGCAACCGTTAATCTCTGATCCGACTGTGGAAAATTCGAATCAGATATCAACGAAGAGGAAGGAGCGTGAGAAAAAGGGAAAAGGGTGTATGAAGAAATGCAAGACCGAAAACAACACTGAAGAAACTGAAAAACTTCCTTATGTTCACGTCCGAGCTCGCCGTGGTCAAGCAACGGATAGCCATAGCTTAGCCGAACGAGCGAGGAGAGAGAAAATAAATGCTAGGATGAAGCTACTTCAGGAACTGGTCCCTGGATGCAATAAGATTTCAGGCACAGCCCTAGTTTTGGATGAAATTATCAACCATGTGCAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAAGCTTGCAGCCGTTAATCCGAGAATTGATTTTGACATCGACGGTTTATTAGCTGCAGAAACCGAACCCGTACTTGAAAGCAACTTTTCTTCCATGGTTACACCATTGATGTGGCCAGAAATCCCACAGAGTGGAAGTAGACAACAATATCAACAACAATGGCATTTTGATTCAGTTAACCAGCCAACTTGGGTGAGGGAAGAACAAAATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAACTTATGATTCCTCAGCAAATTCAGCATCTCTGCACTCAAATCAGTTGAAGATGGAGCTGTGA | 1035 | 43.86 | MELKVGTGLESLQFCEEIQGLMTIPPENASSFTALLELPATQAIELLHSPESEEAATAPETDLTGDTLSKPYFNGFDCNLTFPINTSLIEQRATKFLDHLPEITTSLPLNSCVKNEPGPETDSNPSLLQPLISDPTVENSNQISTKRKEREKKGKGCMKKCKTENNTEETEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFDIDGLLAAETEPVLESNFSSMVTPLMWPEIPQSGSRQQYQQQWHFDSVNQPTWVREEQNHNFSTPENSLLTYDSSANSASLHSNQLKMEL | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12166324 | 12170724 | + | evm.model.ptg000018l.24 | HCH11g0591 | 554058 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0591 | 344 | Pfam | Helix-loop-helix DNA-binding domain | 188 | 235 | IPR011598 | GO:0046983(InterPro) | |
HCH11g0591 | 344 | Gene3D | - | 181 | 253 | IPR036638 | GO:0046983(InterPro) | |
HCH11g0591 | 344 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 133 | 299 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
HCH11g0591 | 344 | CDD | bHLH_AtBPE_like | 174 | 259 | - | - | |
HCH11g0591 | 344 | MobiDBLite | consensus disorder prediction | 111 | 142 | - | - | |
HCH11g0591 | 344 | Coils | Coil | 224 | 244 | - | - | |
HCH11g0591 | 344 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 184 | 234 | IPR011598 | GO:0046983(InterPro) | |
HCH11g0591 | 344 | FunFam | transcription factor bHLH48-like isoform X1 | 181 | 253 | - | - | |
HCH11g0591 | 344 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 182 | 253 | IPR036638 | GO:0046983(InterPro) | |
HCH11g0591 | 344 | SMART | finulus | 190 | 240 | IPR011598 | GO:0046983(InterPro) | |
HCH11g0591 | 344 | MobiDBLite | consensus disorder prediction | 111 | 155 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0591 | HCH-Chr11:12166324 | HCH12g0533 | HCH-Chr12:3131179 | 1.30E-34 | dispersed | |
HCH11g0591 | HCH-Chr11:12166324 | HCH7g0547 | HCH-Chr7:4253811 | 2.80E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32569 | PF00010 | HLH | 1.30E-05 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0591 | - | - | - | 0.0 |