Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0591 ATGGAGCTTAAAGTAGGGACTGGGCTTGAATCTCTTCAATTCTGTGAAGAGATTCAAGGATTGATGACAATTCCACCGGAAAATGCTAGCTCTTTTACTGCACTTTTGGAACTTCCGGCAACTCAAGCTATAGAGCTCCTCCACTCGCCAGAATCTGAAGAAGCTGCGACGGCGCCGGAGACGGATTTGACCGGCGATACCCTTTCGAAACCCTACTTCAACGGCTTCGATTGCAATTTAACATTCCCAATAAACACATCCTTAATTGAACAACGCGCCACCAAATTCTTAGATCATTTGCCGGAAATTACAACATCATTGCCGTTAAATTCGTGTGTTAAGAACGAGCCCGGGCCGGAAACCGATTCGAATCCGAGTTTATTGCAACCGTTAATCTCTGATCCGACTGTGGAAAATTCGAATCAGATATCAACGAAGAGGAAGGAGCGTGAGAAAAAGGGAAAAGGGTGTATGAAGAAATGCAAGACCGAAAACAACACTGAAGAAACTGAAAAACTTCCTTATGTTCACGTCCGAGCTCGCCGTGGTCAAGCAACGGATAGCCATAGCTTAGCCGAACGAGCGAGGAGAGAGAAAATAAATGCTAGGATGAAGCTACTTCAGGAACTGGTCCCTGGATGCAATAAGATTTCAGGCACAGCCCTAGTTTTGGATGAAATTATCAACCATGTGCAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAAGCTTGCAGCCGTTAATCCGAGAATTGATTTTGACATCGACGGTTTATTAGCTGCAGAAACCGAACCCGTACTTGAAAGCAACTTTTCTTCCATGGTTACACCATTGATGTGGCCAGAAATCCCACAGAGTGGAAGTAGACAACAATATCAACAACAATGGCATTTTGATTCAGTTAACCAGCCAACTTGGGTGAGGGAAGAACAAAATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAACTTATGATTCCTCAGCAAATTCAGCATCTCTGCACTCAAATCAGTTGAAGATGGAGCTGTGA 1035 43.86 MELKVGTGLESLQFCEEIQGLMTIPPENASSFTALLELPATQAIELLHSPESEEAATAPETDLTGDTLSKPYFNGFDCNLTFPINTSLIEQRATKFLDHLPEITTSLPLNSCVKNEPGPETDSNPSLLQPLISDPTVENSNQISTKRKEREKKGKGCMKKCKTENNTEETEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFDIDGLLAAETEPVLESNFSSMVTPLMWPEIPQSGSRQQYQQQWHFDSVNQPTWVREEQNHNFSTPENSLLTYDSSANSASLHSNQLKMEL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12166324 12170724 + evm.model.ptg000018l.24 HCH11g0591 554058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0591 344 Pfam Helix-loop-helix DNA-binding domain 188 235 IPR011598 GO:0046983(InterPro)
HCH11g0591 344 Gene3D - 181 253 IPR036638 GO:0046983(InterPro)
HCH11g0591 344 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 133 299 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH11g0591 344 CDD bHLH_AtBPE_like 174 259 - -
HCH11g0591 344 MobiDBLite consensus disorder prediction 111 142 - -
HCH11g0591 344 Coils Coil 224 244 - -
HCH11g0591 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 234 IPR011598 GO:0046983(InterPro)
HCH11g0591 344 FunFam transcription factor bHLH48-like isoform X1 181 253 - -
HCH11g0591 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 253 IPR036638 GO:0046983(InterPro)
HCH11g0591 344 SMART finulus 190 240 IPR011598 GO:0046983(InterPro)
HCH11g0591 344 MobiDBLite consensus disorder prediction 111 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0591 HCH-Chr11:12166324 HCH12g0533 HCH-Chr12:3131179 1.30E-34 dispersed
HCH11g0591 HCH-Chr11:12166324 HCH7g0547 HCH-Chr7:4253811 2.80E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32569 PF00010 HLH 1.30E-05 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0591 - - - 0.0