Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g0602 | ATGTGTGCTCTGCTATTTTTGGCTTTCTTGTTATTGTACGTTGGAATTCACAACACCTGCTCAGATACACACCCCCAGGATTTATCAATCCTCCTATCTTTAAAAAATGAATGGAAAAATACACCACCAACATGGGGAACATCAGCTGATCCATGTGGGCAATGGGAAGGAGTGCAATGCAACGATTCTAGAGTCACTGAATTAATATTACCATCCATGGGCCTTCAAGGTCAACTTAGTGGTGACATTGGTGGCCTCTCTGAACTAATAAAATTGGACCTCTCATTTAACAAAGATCTCACTGGTTCCCTCACTCCAAGGCTGGGGGCTTTGCAAAATTTGAATTTCTTAATCCTTGCTGCCTGTGGCTTGAGTGGTAATATTCCAGAAGAATTGGGCAATCTTACTCAGTTGCTCTTCTTGGCTTTAAATTTAAACAAGTTCACTGGTCCTATACCAACTACTCTGGGCAAACTCTCCAAACTATATTATCTAGACTTAGCTGACAATCAGTTAAGCGGACCTCTCCCTGTTTCGACTTCTGAATCGCCCGGTTTGGACCGCCTTCTCATGGCTCAACACTTCCACTTGAGCAGGAACAAGCTATCAGGTCCCATACCACTAAATCTTTTTAGCTCTGATATGGCATTAATACACCTAGTGTTAGATGGGAATCAGCTTTCTGGGAGTATTCCACAAAACATAGGACTTGTTAAGAACCTTGAACTTCTTCGACTTGATCGTAATTCTCTGACCGGAAATGTTCCATCCAATCTCAACAACCTAACGTATCTCAATCAATTGAATTTAGCTCACAATGATCTGAAAGGTTCATTGCCAAACCTAACTCAAATGAATTCACTAAGTGTTGTGGACCTTAGTAACAACTCATTTAAATCATCAATAGCTCCAGATTGGTTCTCAAGCTTACCATCTCTCACCACTTTGATCATTGAATATGGATCAATACAAGGATCTTTGCCAGAAATAGTGTTTAGCTTACCACAGATACAACAAATAAGAATGAAGAGCAACTTGTTAAGTGAGACGTTGAGCATGGGCGAGAACATCAGCCAAAATCTGGAGCTTGTTGATCTGCAAAATAACCAAATTTCCTCATTTACACCTAGTTATGGATATAGAAAAACCTTGATGCTTGAAGGAAATCCTGTGTGTAACATTGATGGTCACTCAAATGAAAATTATTGCAAGCTTCAAACTCCAGCTACAAACTCTGATTATGCAAACCTCATCAACTGTGAAGCTGGCGGGAAGCAGAAACCTCGAAGCTACGAATGTCAATATCCATTTGAAGGAAGTTTGTACTTTAGAGGACCCCTGTTTGGAGATTTATCCAATGAGACTCTGTTTCTCTTACTGGAAGAGAGTTTTTGCAAGAATCTAAACCTTATTCCTTGTTTAGTTTTTGTTGAACATCCTCATTTTAATGTTGATGACAATCTTCAGATGCAGCTTGCAATATTTCCACCATCTGGAAAGTATTTCAACAGGTCAGAAATTCAGAGGATTAGTTTTAAATTGAGTCATCAAGAATTCATACTTCGTGCAGAGTTTGGGTCGTTCTTTTTCAATGCATTTCCATATAATTTCTCAGATAAAAGAACTTCCATTTCCATTAGCACTGGTTTGCTGATAGGGATAGCTATTGGATGTGCATTTCTGGTCCTAAGCCTCATTGGAGTTGGAATATATGCAATTAGGCAAAAGAAACGTGCAGAAAATGTTGTTGGATTGACTAAGCCATTTGCTTCCTGGGGATCAAGTAAACAAGGTAGTGAAGATGCACCGCAGTTAAAGGGAGCAAGATATTTTTCTTATGATGAACTTAAAAGTTCCACAAATAATTTCTCCATAAGCAATGAGATAGGATCTGGAGGGTATGGCAAGGTTTATAGAGGAATGATTGGTGATGGACAAGTAGTTGCCATTAAAAGAGCAAAGCAAGGATCATTGCAAGGCGGGCTCGAGTTCAAAACAGAAATTGAATTGCTTTCACGAGTTCATCATAAGAATCTTGTCAGCCTGATAGGATTTTGTTTTGAACGAGGTGAACAAATGCTTGTTTATGAATTCATGCCTAATGGAGCTCTCAGAGAGAGCCTATCTGGGAGTTCCGGTATCCATCTCGATTGGAAAAGAAGACTTCTAATAGCACTTGGATCTGCTAGAGGACTGGCTTACCTACACGAGCATGCAAATCCTCCTATTATCCATAGAGATATTAAGTCAACTAATATTCTGTTGGATGAATATTTAAATGCAAAAGTCGCAGATTTTGGCTTGTCCAAGCTTGTATTTGACGATGAAAAGGGACATATTTCTACTCAAGTTAAAGGCACATTGGGTTATTTGGATCCCGGATATTATACTACGCAACAATTAACCGAGAAGAGTGACGTGTACAGCTTTGGCGTGGTTATGCTCGAATTGATAACTTCTAAACTTCCAATTGTGAAAGGGAAGTATATAGTTCGAGAAGTGCTTATGCTGATAAATAACAACGACCAAGAGCATTATGGATTAAGAGATATAATGGATGCAACTATTAGAGATGAAATGACAAATCCAATCGGGTTTGGAAGGTTCTTGGAATTGGCTGTAAAATGTGTACAAGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTAGTCAAAGAAATCGAAAGCATTTTACAGAATGATGGAATATCCTCATCTACAACAGACTTGGAAACTTTGAAAGGTTCTCCCAAATATCCAAAAATAATATCATACCAAAAAAAGGATAACACTTTTGATAATAGTGGTAGGTACACACTTTCAGCAGAAGTGGAACCCAAGTAG | 2844 | 38.89 | MCALLFLAFLLLYVGIHNTCSDTHPQDLSILLSLKNEWKNTPPTWGTSADPCGQWEGVQCNDSRVTELILPSMGLQGQLSGDIGGLSELIKLDLSFNKDLTGSLTPRLGALQNLNFLILAACGLSGNIPEELGNLTQLLFLALNLNKFTGPIPTTLGKLSKLYYLDLADNQLSGPLPVSTSESPGLDRLLMAQHFHLSRNKLSGPIPLNLFSSDMALIHLVLDGNQLSGSIPQNIGLVKNLELLRLDRNSLTGNVPSNLNNLTYLNQLNLAHNDLKGSLPNLTQMNSLSVVDLSNNSFKSSIAPDWFSSLPSLTTLIIEYGSIQGSLPEIVFSLPQIQQIRMKSNLLSETLSMGENISQNLELVDLQNNQISSFTPSYGYRKTLMLEGNPVCNIDGHSNENYCKLQTPATNSDYANLINCEAGGKQKPRSYECQYPFEGSLYFRGPLFGDLSNETLFLLLEESFCKNLNLIPCLVFVEHPHFNVDDNLQMQLAIFPPSGKYFNRSEIQRISFKLSHQEFILRAEFGSFFFNAFPYNFSDKRTSISISTGLLIGIAIGCAFLVLSLIGVGIYAIRQKKRAENVVGLTKPFASWGSSKQGSEDAPQLKGARYFSYDELKSSTNNFSISNEIGSGGYGKVYRGMIGDGQVVAIKRAKQGSLQGGLEFKTEIELLSRVHHKNLVSLIGFCFERGEQMLVYEFMPNGALRESLSGSSGIHLDWKRRLLIALGSARGLAYLHEHANPPIIHRDIKSTNILLDEYLNAKVADFGLSKLVFDDEKGHISTQVKGTLGYLDPGYYTTQQLTEKSDVYSFGVVMLELITSKLPIVKGKYIVREVLMLINNNDQEHYGLRDIMDATIRDEMTNPIGFGRFLELAVKCVQESAADRPTMSEVVKEIESILQNDGISSSTTDLETLKGSPKYPKIISYQKKDNTFDNSGRYTLSAEVEPK | 947 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13209983 | 13217358 | + | evm.model.ptg000018l.13 | HCH11g0602 | 554069 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g0602 | 947 | ProSiteProfiles | Protein kinase domain profile. | 623 | 898 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0602 | 947 | CDD | STKc_IRAK | 629 | 897 | - | - | |
HCH11g0602 | 947 | Gene3D | Ribonuclease Inhibitor | 182 | 280 | IPR032675 | - | |
HCH11g0602 | 947 | Gene3D | Ribonuclease Inhibitor | 26 | 181 | IPR032675 | - | |
HCH11g0602 | 947 | Pfam | Leucine rich repeat | 287 | 347 | IPR001611 | GO:0005515(InterPro) | |
HCH11g0602 | 947 | FunFam | Leucine-rich repeat protein kinase family protein | 590 | 698 | - | - | |
HCH11g0602 | 947 | Pfam | Protein tyrosine and serine/threonine kinase | 625 | 893 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0602 | 947 | FunFam | Leucine-rich repeat family protein | 26 | 181 | - | - | |
HCH11g0602 | 947 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 699 | 910 | - | - | |
HCH11g0602 | 947 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 38 | 895 | - | - | |
HCH11g0602 | 947 | Pfam | Leucine rich repeat N-terminal domain | 24 | 61 | IPR013210 | - | |
HCH11g0602 | 947 | Gene3D | Transferase(Phosphotransferase) domain 1 | 699 | 914 | - | - | |
HCH11g0602 | 947 | SUPERFAMILY | L domain-like | 40 | 393 | - | - | |
HCH11g0602 | 947 | SUPERFAMILY | Protein kinase-like (PK-like) | 609 | 905 | IPR011009 | - | |
HCH11g0602 | 947 | SMART | serkin_6 | 623 | 898 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g0602 | 947 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 743 | 755 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH11g0602 | 947 | FunFam | Leucine-rich repeat protein kinase family protein | 182 | 281 | - | - | |
HCH11g0602 | 947 | Gene3D | Phosphorylase Kinase; domain 1 | 594 | 698 | - | - | |
HCH11g0602 | 947 | ProSitePatterns | Protein kinases ATP-binding region signature. | 629 | 651 | IPR017441 | GO:0005524(InterPro) | |
HCH11g0602 | 947 | Gene3D | Ribonuclease Inhibitor | 281 | 422 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0001 | HCH-Chr11:592834 | HCH11g0602 | HCH-Chr11:13209983 | 6.50E-305 | dispersed | |
HCH11g0602 | HCH-Chr11:13209983 | HCH9g0850 | HCH-Chr9:6038184 | 2.80E-95 | dispersed | |
HCH11g0602 | HCH-Chr11:13209983 | HCH11g0647 | HCH-Chr11:28098178 | 0.00E+00 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81058 | PF07714 | PK_Tyr_Ser-Thr | 3.70E-45 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g0602 | - | - | - | 0.0 |