Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g0602 ATGTGTGCTCTGCTATTTTTGGCTTTCTTGTTATTGTACGTTGGAATTCACAACACCTGCTCAGATACACACCCCCAGGATTTATCAATCCTCCTATCTTTAAAAAATGAATGGAAAAATACACCACCAACATGGGGAACATCAGCTGATCCATGTGGGCAATGGGAAGGAGTGCAATGCAACGATTCTAGAGTCACTGAATTAATATTACCATCCATGGGCCTTCAAGGTCAACTTAGTGGTGACATTGGTGGCCTCTCTGAACTAATAAAATTGGACCTCTCATTTAACAAAGATCTCACTGGTTCCCTCACTCCAAGGCTGGGGGCTTTGCAAAATTTGAATTTCTTAATCCTTGCTGCCTGTGGCTTGAGTGGTAATATTCCAGAAGAATTGGGCAATCTTACTCAGTTGCTCTTCTTGGCTTTAAATTTAAACAAGTTCACTGGTCCTATACCAACTACTCTGGGCAAACTCTCCAAACTATATTATCTAGACTTAGCTGACAATCAGTTAAGCGGACCTCTCCCTGTTTCGACTTCTGAATCGCCCGGTTTGGACCGCCTTCTCATGGCTCAACACTTCCACTTGAGCAGGAACAAGCTATCAGGTCCCATACCACTAAATCTTTTTAGCTCTGATATGGCATTAATACACCTAGTGTTAGATGGGAATCAGCTTTCTGGGAGTATTCCACAAAACATAGGACTTGTTAAGAACCTTGAACTTCTTCGACTTGATCGTAATTCTCTGACCGGAAATGTTCCATCCAATCTCAACAACCTAACGTATCTCAATCAATTGAATTTAGCTCACAATGATCTGAAAGGTTCATTGCCAAACCTAACTCAAATGAATTCACTAAGTGTTGTGGACCTTAGTAACAACTCATTTAAATCATCAATAGCTCCAGATTGGTTCTCAAGCTTACCATCTCTCACCACTTTGATCATTGAATATGGATCAATACAAGGATCTTTGCCAGAAATAGTGTTTAGCTTACCACAGATACAACAAATAAGAATGAAGAGCAACTTGTTAAGTGAGACGTTGAGCATGGGCGAGAACATCAGCCAAAATCTGGAGCTTGTTGATCTGCAAAATAACCAAATTTCCTCATTTACACCTAGTTATGGATATAGAAAAACCTTGATGCTTGAAGGAAATCCTGTGTGTAACATTGATGGTCACTCAAATGAAAATTATTGCAAGCTTCAAACTCCAGCTACAAACTCTGATTATGCAAACCTCATCAACTGTGAAGCTGGCGGGAAGCAGAAACCTCGAAGCTACGAATGTCAATATCCATTTGAAGGAAGTTTGTACTTTAGAGGACCCCTGTTTGGAGATTTATCCAATGAGACTCTGTTTCTCTTACTGGAAGAGAGTTTTTGCAAGAATCTAAACCTTATTCCTTGTTTAGTTTTTGTTGAACATCCTCATTTTAATGTTGATGACAATCTTCAGATGCAGCTTGCAATATTTCCACCATCTGGAAAGTATTTCAACAGGTCAGAAATTCAGAGGATTAGTTTTAAATTGAGTCATCAAGAATTCATACTTCGTGCAGAGTTTGGGTCGTTCTTTTTCAATGCATTTCCATATAATTTCTCAGATAAAAGAACTTCCATTTCCATTAGCACTGGTTTGCTGATAGGGATAGCTATTGGATGTGCATTTCTGGTCCTAAGCCTCATTGGAGTTGGAATATATGCAATTAGGCAAAAGAAACGTGCAGAAAATGTTGTTGGATTGACTAAGCCATTTGCTTCCTGGGGATCAAGTAAACAAGGTAGTGAAGATGCACCGCAGTTAAAGGGAGCAAGATATTTTTCTTATGATGAACTTAAAAGTTCCACAAATAATTTCTCCATAAGCAATGAGATAGGATCTGGAGGGTATGGCAAGGTTTATAGAGGAATGATTGGTGATGGACAAGTAGTTGCCATTAAAAGAGCAAAGCAAGGATCATTGCAAGGCGGGCTCGAGTTCAAAACAGAAATTGAATTGCTTTCACGAGTTCATCATAAGAATCTTGTCAGCCTGATAGGATTTTGTTTTGAACGAGGTGAACAAATGCTTGTTTATGAATTCATGCCTAATGGAGCTCTCAGAGAGAGCCTATCTGGGAGTTCCGGTATCCATCTCGATTGGAAAAGAAGACTTCTAATAGCACTTGGATCTGCTAGAGGACTGGCTTACCTACACGAGCATGCAAATCCTCCTATTATCCATAGAGATATTAAGTCAACTAATATTCTGTTGGATGAATATTTAAATGCAAAAGTCGCAGATTTTGGCTTGTCCAAGCTTGTATTTGACGATGAAAAGGGACATATTTCTACTCAAGTTAAAGGCACATTGGGTTATTTGGATCCCGGATATTATACTACGCAACAATTAACCGAGAAGAGTGACGTGTACAGCTTTGGCGTGGTTATGCTCGAATTGATAACTTCTAAACTTCCAATTGTGAAAGGGAAGTATATAGTTCGAGAAGTGCTTATGCTGATAAATAACAACGACCAAGAGCATTATGGATTAAGAGATATAATGGATGCAACTATTAGAGATGAAATGACAAATCCAATCGGGTTTGGAAGGTTCTTGGAATTGGCTGTAAAATGTGTACAAGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTAGTCAAAGAAATCGAAAGCATTTTACAGAATGATGGAATATCCTCATCTACAACAGACTTGGAAACTTTGAAAGGTTCTCCCAAATATCCAAAAATAATATCATACCAAAAAAAGGATAACACTTTTGATAATAGTGGTAGGTACACACTTTCAGCAGAAGTGGAACCCAAGTAG 2844 38.89 MCALLFLAFLLLYVGIHNTCSDTHPQDLSILLSLKNEWKNTPPTWGTSADPCGQWEGVQCNDSRVTELILPSMGLQGQLSGDIGGLSELIKLDLSFNKDLTGSLTPRLGALQNLNFLILAACGLSGNIPEELGNLTQLLFLALNLNKFTGPIPTTLGKLSKLYYLDLADNQLSGPLPVSTSESPGLDRLLMAQHFHLSRNKLSGPIPLNLFSSDMALIHLVLDGNQLSGSIPQNIGLVKNLELLRLDRNSLTGNVPSNLNNLTYLNQLNLAHNDLKGSLPNLTQMNSLSVVDLSNNSFKSSIAPDWFSSLPSLTTLIIEYGSIQGSLPEIVFSLPQIQQIRMKSNLLSETLSMGENISQNLELVDLQNNQISSFTPSYGYRKTLMLEGNPVCNIDGHSNENYCKLQTPATNSDYANLINCEAGGKQKPRSYECQYPFEGSLYFRGPLFGDLSNETLFLLLEESFCKNLNLIPCLVFVEHPHFNVDDNLQMQLAIFPPSGKYFNRSEIQRISFKLSHQEFILRAEFGSFFFNAFPYNFSDKRTSISISTGLLIGIAIGCAFLVLSLIGVGIYAIRQKKRAENVVGLTKPFASWGSSKQGSEDAPQLKGARYFSYDELKSSTNNFSISNEIGSGGYGKVYRGMIGDGQVVAIKRAKQGSLQGGLEFKTEIELLSRVHHKNLVSLIGFCFERGEQMLVYEFMPNGALRESLSGSSGIHLDWKRRLLIALGSARGLAYLHEHANPPIIHRDIKSTNILLDEYLNAKVADFGLSKLVFDDEKGHISTQVKGTLGYLDPGYYTTQQLTEKSDVYSFGVVMLELITSKLPIVKGKYIVREVLMLINNNDQEHYGLRDIMDATIRDEMTNPIGFGRFLELAVKCVQESAADRPTMSEVVKEIESILQNDGISSSTTDLETLKGSPKYPKIISYQKKDNTFDNSGRYTLSAEVEPK 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13209983 13217358 + evm.model.ptg000018l.13 HCH11g0602 554069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g0602 947 ProSiteProfiles Protein kinase domain profile. 623 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0602 947 CDD STKc_IRAK 629 897 - -
HCH11g0602 947 Gene3D Ribonuclease Inhibitor 182 280 IPR032675 -
HCH11g0602 947 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
HCH11g0602 947 Pfam Leucine rich repeat 287 347 IPR001611 GO:0005515(InterPro)
HCH11g0602 947 FunFam Leucine-rich repeat protein kinase family protein 590 698 - -
HCH11g0602 947 Pfam Protein tyrosine and serine/threonine kinase 625 893 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0602 947 FunFam Leucine-rich repeat family protein 26 181 - -
HCH11g0602 947 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 699 910 - -
HCH11g0602 947 PANTHER RECEPTOR-LIKE PROTEIN 55 38 895 - -
HCH11g0602 947 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
HCH11g0602 947 Gene3D Transferase(Phosphotransferase) domain 1 699 914 - -
HCH11g0602 947 SUPERFAMILY L domain-like 40 393 - -
HCH11g0602 947 SUPERFAMILY Protein kinase-like (PK-like) 609 905 IPR011009 -
HCH11g0602 947 SMART serkin_6 623 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g0602 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g0602 947 FunFam Leucine-rich repeat protein kinase family protein 182 281 - -
HCH11g0602 947 Gene3D Phosphorylase Kinase; domain 1 594 698 - -
HCH11g0602 947 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524(InterPro)
HCH11g0602 947 Gene3D Ribonuclease Inhibitor 281 422 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0001 HCH-Chr11:592834 HCH11g0602 HCH-Chr11:13209983 6.50E-305 dispersed
HCH11g0602 HCH-Chr11:13209983 HCH9g0850 HCH-Chr9:6038184 2.80E-95 dispersed
HCH11g0602 HCH-Chr11:13209983 HCH11g0647 HCH-Chr11:28098178 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81058 PF07714 PK_Tyr_Ser-Thr 3.70E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g0602 - - - 0.0